ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C13983

α-D-galacturonate 1-phosphate

C14156

L-xylo-hex-3-ulono-1,4-lactone

C12046

L-gulono-1,4-lactone

C12056

L-arginino-succinate

C12174

4-amino-2-methyl-5-pyrimidinemethanol

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C567

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

C927

carbon monoxide

C1268

(R)-4'-phosphopantothenate

C1552

2-(α-hydroxyethyl)thiamine diphosphate

C11826

oxalosuccinate

C15180

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

C13929

cyclohexane-1-carbonyl-CoA

C13930

cyclohexane-1-carboxylate

C1357

3-oxopimeloyl-CoA

C1399

3-hydroxypimeloyl-CoA

C1148

6-oxocyclohex-1-ene-1-carbonyl-CoA

C1155

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

C12402

cyclohex-1,5-diene-1-carbonyl-CoA

C12407

crotonate

C3262

3-methyl-2-oxobutanoate

C12409

creatinine

C859

31-O-desmethylFK-506

C857

FK-506

C8333

(indol-3-yl)pyruvate

C11693

(indol-3 yl)acetyl-CoA

C1078

(S)-2-amino-6-oxohexanoate

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12369

3-dehydroquinate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C1196

S-methyl-5'-thioadenosine

C15238

5-deoxy-α-ribose 1-phosphate

C1538

2-C-methyl-D-erythritol 4-phosphate

C12048

γ-L-glutamyl 5-phosphate

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C15215

(L-threonylcarbamoyl)adenylate

C13851

hydrogenobyrinate

C13850

hydrogenobyrinate a,c-diamide

C12352

(S)-dihydroorotate

C12254

ethanolamine

C12164

H2

C4883

2-oleoylglycerol

C14215

3-phosphonopyruvate

C11832

orotidine 5'-phosphate

C1251

4,8,12-trimethyltridecanoyl-CoA

C1355

3-oxopristanoyl-CoA

C12078

itaconate

C7865

urea

C13928

urea-1-carboxylate

C15056

salicyl alcohol

C2580

methylsalicylate

C11539

xanthine

C1440

nigerose

C11748

pseudouridine 5'-phosphate

C873

coproporphyrinogen III

C11483

glycolate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C3319

4-methyl-2-oxopentanoate

C506

3-ethylmalate

C3259

2-oxovalerate

C1528

2-dehydropantoate

C192

adenosine 5'-phosphoselenate

C996

adenosine 5'-phosphosulfate

C11794

3'-phosphoadenylyl-sulfate

C11857

β-nicotinate D-ribonucleotide

C11715

quinolinate

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C10349

glycerone phosphate

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C11648

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

C11802

4'-phosphopantetheine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C285

coenzyme B

C13751

methanophenazine

C283

CoB-CoM heterodisulfide

C12331

dihydromethanophenazine

C12162

hydrogen peroxide

C1184

5-phospho-β-D-ribosylamine

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C12016

(lipoyl)adenylate

C2191

carbamoyl phosphate

C9422

nicotinate adenine dinucleotide

C13681

5-carboxymethyl-2-hydroxymuconate

C11479

phosphoenolpyruvate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C13985

(R)-5-phosphomevalonate

C1353

3-phosphooxypyruvate

C11606

thiamine phosphate

C11604

thiamine diphosphate

C11964

(R)-mevalonate

C928

CO2

C1438

(2S)-2-isopropylmalate

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C6444

oxaloacetate

C891

citrate

C1285

4-imidazolone-5-propanoate

C11557

urocanate

C12218

α-D-glucosamine 1-phosphate

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C11543

H2O

C160

2-carboxy-L-threo-pentonate

C159

2-carboxy-L-xylonolactone

C14153

2,3-dioxo-L-gulonate

C163

dehydroascorbate (bicyclic form)

C1010

ammonia

C13702

1-piperideine 6-carboxylate

C1024

aminoacetone

C12054

L-dehydro-ascorbate

C4734

dimethyl sulfide

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C12629

coenzyme M

C7014

sulfate

C7057

molybdate

C7036

hydrogencarbonate

C7016

sulfite

C7020

selenate

C7034

hydrogensulfite

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C7006

chloride

C7864

Fe3+

C4320

H+

C4328

ammonium

C11006

Co2+

C11023

Fe2+

C1689

trimethyl sulfonium

C10301

agmatine

C3548

putrescine

C3580

dehydrospermidine

C3574

spermidine

C13166

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C6708

2-iminopropanoate

C6524

2-aminoprop-2-enoate

C11220

glycerophosphoglycerol

C11219

glycerophosphoserine

C11222

sn-glycero-3-phosphoethanolamine

C11281

2-chloroacetate

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C9098

methyl (indol-3-yl)acetate

C9096

(indol-3-yl)acetate

C3727

all-trans-retinyl palmitate

C10076

L-galactono-1,4-lactone

C4924

glutaryl-CoA

C4922

isobutanoyl-CoA

C5314

2-methylacetoacetyl-CoA

C5282

itaconyl-CoA

C4937

3'-dephospho-CoA

C4901

succinyl-CoA

C4927

(E)-glutaconyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5298

acetyl-CoA

C5919

(S)-methylmalonyl-CoA

C5920

(R)-methylmalonyl-CoA

C1337

crotonyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C1177

propanoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C10053

FAD

C10049

FMNH2

C10052

FMN

C5392

(S)-NADHX

C5394

(R)-NADHX

C14497

NADPH

C14500

NADH

C4018

NADP+

C4020

NAD+

C12718

molybdopterin

C10611

(R)-lipoate

C10614

coenzyme A

C6007

MoO2-molybdopterin cofactor

C6003

guanylyl molybdenum cofactor

C10597

7,8-dihydrofolate monoglutamate

C7129

5,6,7,8-tetrahydrofolate

C4599

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

C6250

5,10-methylenetetrahydropteroyl mono-L-glutamate

C414

10-formyl-tetrahydrofolate mono-L-glutamate

C8565

5-methyltetrahydropteroyl mono-L-glutamate

C10986

L-ascorbate

C10988

riboflavin

C10966

all-trans-retinol

C10143

menadione

C9454

adenine

C9455

guanine

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C7755

2'-deoxyinosine

C15091

inosine

C15088

adenosine

C7785

hypoxanthine

C7743

dAMP

C7840

dGMP

C7834

dIMP

C7749

dITP

C7751

dGTP

C7783

dATP

C7747

dIDP

C7807

dGDP

C7823

dADP

C7817

IDP

C7795

GDP

C7757

ADP

C7811

XMP

C7827

GMP

C7741

IMP

C7809

AMP

C7753

XTP

C7759

ITP

C7745

GTP

C7844

ATP

C11481

orotate

C8739

uracil

C8770

dUMP

C8744

dTMP

C8760

UTP

C8752

dUDP

C8724

dUTP

C8720

dTDP

C8764

dTTP

C8772

dCTP

C8761

CTP

C8755

dCMP

C8733

dCDP

C8714

UDP

C8732

CDP

C2702

cytidine

C2706

uridine

C2519

thymidine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C10601

thymine

C2241

UMP

C2245

CMP

C7764

UDP-α-D-galacturonate

C7804

UDP-α-D-galactofuranose

C8666

UDP-α-D-galactose

C7780

UDP-α-D-glucose

C7722

UDP-α-D-glucuronate

C7444

UDP-N-acetyl-α-D-glucosamine

C1930

dTDP-β-L-rhamnose

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C1896

dTDP-4-dehydro-β-L-rhamnose

C1939

dTDP-α-D-glucose

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C9540

preQ1

C9822

cobalt-precorrin-3

C9837

cobalt-precorrin-7

C9866

cobalt-precorrin-8

C9842

cobalt-precorrin-6B

C9813

cobalt-precorrin-5B

C9818

cobalt-precorrin-6A

C9847

cobalt-precorrin-4

C9871

cobalt-precorrin-5A

C2305

precorrin-1

C2311

precorrin-2

C1705

sirohydrochlorin

C9861

cobyrinate

C9874

cob(I)alamin

C5221

adenosylcobalamin

C12742

7,8-dihydrolumazine

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C12668

molybdopterin adenine dinucleotide

C12702

cyclic pyranopterin phosphate

C12730

7,8-dihydroneopterin 3'-triphosphate

C12714

7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C10609

7,8-dihydropteroate

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C13354

preQ0

C13366

(indole-3-yl)acetonitrile

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C11429

salicylate

C8968

benzoate

C8974

4-aminobenzoate

C2915

menadiol

C3383

palmitate

C11482

(R)-pantoate

C11517

acetate

C2021

aldehydo-D-galacturonate

C2047

aldehydo-D-glucuronate

C3351

glyoxylate

C3257

2-oxobutanoate

C3308

pyruvate

C3301

2-oxoglutarate

C3288

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

C5612

L-cysteine

C5573

L-tyrosine

C5577

L-threonine

C5579

L-serine

C12067

glycine

C5643

L-asparagine

C5609

L-glutamine

C5584

L-lysine

C5630

Nω-hydroxy-L-arginine

C5642

L-arginine

C5605

L-histidine

C5596

L-aspartate

C5607

L-glutamate

C8805

D-aspartate

C8799

D-alanine

C12073

L-aspartyl-4-phosphate

C12201

L-2-amino-3-oxobutanoate

C5466

N-formimino-L-glutamate

C13322

N-carbamoyl-L-aspartate

C3402

3-phospho-L-serine

C12303

L-citrulline

C12245

L-homoserine

C12229

O-phospho-L-homoserine

C12231

L-ornithine

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C12247

L-homocysteine

C5583

L-methionine

C5588

L-leucine

C5597

L-alanine

C11443

creatine

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C8534

cis-aconitate

C8538

(2R)-homocitrate

C8549

(1R,2S)-homoisocitrate

C8555

cis-homoaconitate

C8531

D-threo-isocitrate

C6185

(R)-lactate

C6186

(S)-lactate

C11476

(R)-glycerate

C3420

propanoate

C3421

formate

C7085

β-D-glucopyranose

C7087

α-D-glucopyranose

C2109

α-D-galactopyranose

C3500

acetaldehyde

C6246

(S)-lactaldehyde

C10527

myo-inositol

C13592

1D-myo-inositol 2-monophosphate

C13576

1D-myo-inositol 1-monophosphate

C13588

1D-myo-inositol 6-monophosphate

C13580

1D-myo-inositol 5-monophosphate

C13584

1D-myo-inositol 4-monophosphate

C13573

1D-myo-inositol 3-monophosphate

C3448

methanol

C3731

glycerol

C6241

1-oleoyl-sn-glycerol 3-phosphate

C10448

saturated CDP-archaeol

C10453

unsaturated CDP-archaeol

C6266

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

C6269

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

C9077

(2E,6E)-farnesyl diphosphate

C11012

phytyl diphosphate

C4553

3-octaprenyl-4-hydroxybenzoate

C5378

geranylgeranyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C10693

sucrose

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C8835

β-D-fructofuranose

C3126

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C973

D-ribulose-1,5-bisphosphate

C6673

sucrose 6F-phosphate

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10326

β-D-fructose 1,6-bisphosphate

C2989

β-D-fructofuranose 6-phosphate

C15303

D-fructose 6-phosphate

C2125

α-D-glucose 6-phosphate

C2123

β-D-glucose 6-phosphate

C8704

D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C3678

aldehydo-L-galactonate

C3679

L-gulonate

C7652

cyclic-AMP

C5552

5'-deoxyadenosine

C10288

adenylo-succinate

C4240

reduced β-nicotinamide D-ribonucleotide

C4243

β-nicotinamide D-ribonucleotide

C6596

2-iminosuccinate

C2951

hippurate

C3865

phosphonoacetaldehyde

C9821

cobalt-factor III

C9845

cobalt-sirohydrochlorin

C9811

cob(II)yrinate c-monoamide

C9828

cob(II)yrinate a,c-diamide

C9823

cob(I)yrinate a,c-diamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9869

cob(I)inamide

C9807

adenosylcobinamide

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C7118

hydrogen sulfide

C7121

oxygen

C8419

sn-glycerol 3-phosphate

C8420

sn-glycerol 1-phosphate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C6317

5,10-methenyltetrahydrofolate mono-L-glutamate

C6287

2-octaprenylphenol

C8962

nitric oxide

C8959

monodehydroascorbate radical