an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

5-dehydro-4-deoxy-D-glucarate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-deoxy-D-glycero-2,5-hexodiulosonate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

O-phosphoethanolamine

phosphocholine

glutathione disulfide

(L-threonylcarbamoyl)adenylate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

M_LPS

core oligosaccharide-lipid A (E. coli K-12 core type)

ethanolamine

DNA without lesion

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

prephytoene diphosphate

methylsalicylate

α-D-glucosamine 1-phosphate

(lipoyl)adenylate

α-D-galactosyl-diphosphoundecaprenol

1-phosphatidyl-myo-inositol

1-phosphatidyl-myo-inositol 2-mannose

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

salicyl alcohol

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

thiamine diphosphate

urea

hydrogen peroxide

4'-phosphopantetheine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

β-D-ribosylnicotinate

xanthine

quinolinate

3-methyl-2-oxobutanoate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

(R)-pantothenate

(R)-4'-phosphopantothenate

coproporphyrinogen III

tartronate semialdehyde

acetyl phosphate

3-dehydroquinate

3-dehydroshikimate

shikimate

shikimate 3-phosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

butanoyl phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

hydrogen selenide

O-acetyl-L-serine

N-Formyl-L-kynurenine

6-phospho D-glucono-1,5-lactone

enol-phenylpyruvate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

glycerone phosphate

D-gluconate 6-phosphate

CO₂

phosphoenolpyruvate

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

ammonia

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

2-amino-3-carboxymuconate-6-semialdehyde

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

anthranilate

N-(5-phosphoribosyl)-anthranilate

2-iminoacetate

hypotaurine

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate

2-phosphoglycolate

propanoyl phosphate

4-pyridoxolactone

glycolate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

nigerose

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-homocysteine

4-methylphenol

DNA with lesion

cob(I)alamin

adenosylcobalamin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

hydrogen cyanide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

superoxide

nitric oxide

monodehydroascorbate radical

dimethyl sulfide

glutathione

2-sulfinoacetaldehyde

N-acetyl-D-galactosamine 6-O-sulfate

(R)-S-lactoylglutathione

H⁺

ammonium

K⁺

Cd²⁺

Cu²⁺

Mn²⁺

Pb²⁺

Hg²⁺

Co²⁺

Zn²⁺

Fe²⁺

trimethyl sulfonium

hydrogencarbonate

thiosulfate

sulfate

hydrogensulfite

sulfite

phosphate

triphosphate

diphosphate

agmatine

N¹-acetylspermidine

N-acetylputrescine

N¹-acetylspermine

spermidine

spermine

cadaverine

putrescine

choline

glycine betaine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

acetamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

4-hydroxybutanoyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

3'-dephospho-CoA

succinyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

isobutanoyl-CoA

CoA-disulfide

acetyl-CoA

crotonyl-CoA

oleoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexadecanedioyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

FMNH₂

FMN

FADH₂

FAD

(S)-NADHX

(R)-NADHX

NADH

NADPH

NADP⁺

NAD⁺

ubiquinol-9

3-demethylubiquinol-9

(R)-lipoate

coenzyme A

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

thiamine

nicotinate

L-ascorbate

pyridoxal

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

reduced riboflavin

guanine

adenine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dGTP

dATP

dGDP

dADP

GDP

ADP

GMP

IMP

XMP

AMP

GTP

ATP

dCMP

dTDP

dTMP

dUMP

uracil

dUTP

dCTP

UTP

CTP

dUDP

UDP

dCDP

CDP

CDP-choline

dTTP

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

thymine

CMP

UMP

preQ₁

scopoletin

coumarin

4-methylumbelliferone

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

preQ₀

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicylaldehyde

urate

benzaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

coumarinate

salicylate

benzoate

chorismate

(4S)-4-hydroxy-2-oxoglutarate

fumarate

L-aspartate

(S)-malate

D-galactarate

4-hydroxybutanoate

(S)-lactate

(R)-lactate

propanoate

acetate

formate

pyruvate

butanoate

octanoate

3-oxoadipate

leukotriene-D4

leukotriene-E4

oleate

apo-4'-lycopenoate

palmitate

D-mannonate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

L-kynurenine

L-serine

L-leucine

glycine

L-alanine

L-glutamine

L-proline

L-glutamate

L-histidine

N^ω-hydroxy-L-arginine

L-arginine

L-lysine

L-threonine

L-tyrosine

L-asparagine

L-cysteine

L-phenylalanine

L-tryptophan

D-alanine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

L-citrulline

L-ornithine

S-sulfo-L-cysteine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-selenocysteine

L-methionine

methylglyoxal

1-octanal

isobutanal

acetaldehyde

(S)-lactaldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

α-D-galactopyranose

β-D-galactopyranose

β-L-rhamnopyranose

α-L-rhamnopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

methanol

ethanol

glycerol

phytosphingosine

D-erythro-sphinganine

sphinganine 1-phosphate

phytosphingosine 1-phosphate

myo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

apo-4'-lycopenal

all-trans-phytoene

all-trans phytofluene

15-cis-phytoene

all-trans-lycopene

γ-carotene

β-carotene

δ-carotene

α-carotene

(2E,6E)-farnesyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

maltotriose

unsaturated gellan tetrasaccharide

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl--D-galactosamine 6-sulfate

sucrose

β-D-cellobiose

colanic acid

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-galactosamine

N-acetyl-β-D-glucosamine

keto-D-fructose

β-D-fructofuranose

keto-L-rhamnulose

D-xylulose

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

sucrose 6^F-phosphate

β-D-cellobiose 6'-phosphate

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-mannuronate

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-altronate

aldehydo-L-galactonate

L-gulonate

cyclic-AMP

adenylo-succinate

5'-deoxyadenosine

pppGpp

ppGpp

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

2-iminosuccinate