an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

xanthine

H₂O

urocanate

urea

tryptamine

thiamine diphosphate

thiamine phosphate

tartronate semialdehyde

L-tartrate

succinate semialdehyde

shikimate 3-phosphate

shikimate

selenophosphate

scopolin

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

S-acetyldihydrolipoamide

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-1-amino-2-propanol O-2-phosphate

quinolinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

pyrazine-2-carboxylate

pseudouridine 5'-phosphate

prephenate

porphobilinogen

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

phosphoenolpyruvate

3'-phosphoadenylyl-sulfate

(R)-pantothenate

4'-phosphopantetheine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(E)-4-coumaroyl-CoA

glutathione disulfide

oxalosuccinate

oxalate

oxaloacetate

orotidine 5'-phosphate

hydroxypyruvate

O-ureido-L-homoserine

norspermidine

N,N-dimethylaniline-N-oxide

N,N-dimethylaniline

β-nicotinate D-ribonucleotide

naphthalene-1,2-diol

N6'-acetylkanamycin-B

N²acetyl-L-2-aminoadipate 6-phosphate

N²-succinylglutamate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

N-acetylglutamyl-phosphate

N-acetyl-D-galactosamine 6-phosphate

N²-acetyl-L-2-aminoadipate semialdehyde

N-(5-phosphoribosyl)-anthranilate

(E)-3-(methoxycarbonyl)pent-2-enedioate

2-methylbutanal

methylamine

meso-tartrate

3-oxopropanoate

lipoamide

lipid IV_A

L-histidinol phosphate

L-gulono-1,4-lactone

γ-L-glutamyl 5-phosphate

L-dehydro-ascorbate

L-arginino-succinate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

itaconate

isochorismate

isobutanol

indoxyl

indole-3-glycol

imidazole acetol-phosphate

preuroporphyrinogen

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

hydrogen peroxide

H₂

4-amino-2-methyl-5-pyrimidinemethanol

histidinol

histidinal

carbonic acid

glycolate

glutathionylspermidine

(S)-4-amino-5-oxopentanoate

α-D-glucosamine 1-phosphate

γ-butyrobetaine

formamide

ethanolamine

enol-phenylpyruvate

(E)-2-benzylidenesuccinyl-CoA

5,6-dimethylbenzimidazole

autoinducer 2

1-deoxy-L-glycero-tetrulose 4-phosphate

glycerone phosphate

dihydrolipoamide

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

7,8-diaminopelargonate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

(S)-dihydroorotate

dethiobiotin

isopentenyl diphosphate

(S)-2,3,4,5-tetrahydrodipicolinate

3-dehydroquinate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

nicotinate adenine dinucleotide

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

D-galactosamine-6-phosphate

D-erythro-imidazole-glycerol-phosphate

6-phospho D-glucono-1,5-lactone

crotono-betaine

creatinine

trans-O-hydroxybenzylidenepyruvate

1,6-anhydro-N-acetyl-β-muramate

S-succinyl-dihydrolipoamide

2,3-didehydroadipyl-CoA

5-methylcytosine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

carboxynorspermidine

2-isopropylmaleate

3-methylbenzaldehyde

DNA without lesion

AP site on DNA created by glycosylase in repair process

5-dehydro-2-deoxy-D-gluconate

β-D-ribosylnicotinate

N²-succinyl-L-glutamate 5-semialdehyde

N-ethylammelide

N-ethylammeline

deethylsimazine

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

cis-coumarinic acid-β-D-glucoside

muconolactone

(2S)-2-isopropyl-3-oxosuccinate

2-phenylethanol

2-methylbutanol

3-methylbutanol

3-methylbutanal

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

hydrogen selenide

2-phosphoglycolate

2-hydroxy-3-oxosuccinate

2,5-dioxopentanoate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

methylsalicylate

5-amino-6-(5-phospho-D-ribosylamino)uracil

S-ribosyl-L-homocysteine

5-(methylsulfanyl)-α-D-ribose

pimeloyl-CoA

α-D-galacturonate 1-phosphate

pseudouridine

N-acetyl-L-glutamate 5-semialdehyde

prephytoene diphosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

prenyl diphosphate

N⁶-(Δ²-isopentenyl)-adenosine 5'-monophosphate

3'-ketosucrose

2-keto-D-gluconate

4-pyridoxolactone

4-acetamidobutanoate

2-dehydro-6-phospho-D-gluconate

2,3-dioxo-L-gulonate

L-xylo-hex-3-ulono-1,4-lactone

propane-1,3-diamine

4-acetamidobutanal

D-gluconate 6-phosphate

2-maleylacetate

nicotine-1'-N-oxide

(indol-3-yl)acetamide

L-β-lysine

(2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate

2-pyrone-4,6-dicarboxylate

gallate

sym-homospermidine

4-methylumbelliferyl acetate

salicyl alcohol

(S)-5-amino-3-oxohexanoate

5-deoxy-α-ribose 1-phosphate

(+)-muconolactone

(3R,6R)-1,3,4,6-tetrachlorocyclohexa-1,4-diene

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

cyclic-2,3-O-oxalyl-L-threonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

cyclic- 3,4-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

L-selenocystathionine

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

2-iminoacetate

3-(4-hydroxyphenyl)-3-oxo-propionyl-CoA

(S)-mandelate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(R)-mandelate

5-methoxyindoleacetaldehyde

5-methoxytryptamine

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole thiazolidine carboxylate

4-methylumbelliferyl glucoside

digallate

(S)-ureidoglycolate

5-amino-6-(5-phospho-D-ribitylamino)uracil

4-methyl-3-oxoadipate

4-methyl-3-oxoadipate-enol-lactone

4-methylmuconolactone

4-hydroxy-2-nonenal

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(3S,5S)-3,5-diaminohexanoate

5-methylsalicylate

4-chloro-2-methyl-cis,cis-muconate

2-chloro-4-methyl-cis,cis-muconate

protoanemonin

2,4-dichloro-cis,cis-muconate

4-methylsalicylate

iminodiacetate

nitrilotriacetate

(5R)-5-benzyl-hydantoin

(5S)-5-benzyl-hydantoin

coproporphyrinogen III

citrate

cis,cis-muconate

(1R,2S)-1,2-dihydronaphthalene-1,2-diol

chloroacetaldehyde

chloramphenicol

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

carbon monoxide

CO₂

carbamoyl phosphate

canavaninosuccinate

L-canavanine

lipid X

lipid A disaccharide (E. coli)

benzoylsuccinyl-CoA

arachidonoyl-CoA

adenosine 5'-phosphosulfate

anthranilate

ammonia

5-amino-6-(D-ribitylamino)uracil

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

α-ribazole 5'-phosphate

α-ribazole

O-acetyl-L-serine

acetyl phosphate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

8-amino-7-oxononanoate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5-oxo-L-proline

S-methyl-5'-thioadenosine

5-dehydro-4-deoxy-D-glucarate

5-hydroxyindole acetaldehyde

5-dehydro-D-gluconate

5-aminolevulinate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

4-phosphooxy-L-threonine

(R)-4'-phosphopantothenate

4-oxoglutaramate

4-methylbenzyl alcohol

4-imidazolone-5-propanoate

4-hydroxybenzaldehyde

4-aminobutanoate

4-amino-4-deoxychorismate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3,4-dihydroxyphenylacetaldehyde

3-ureidopropanoate

3-phosphooxypyruvate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-hydroxybenzyl alcohol

3-hydroxybenzaldehyde

3-methylbenzyl alcohol

acetoacetate

indole-3-glycol aldehyde

5-enolpyruvoyl-shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroshikimate

(2S)-2-isopropylmalate

adenosine 3',5'-bisphosphate

4-methyl-2-oxopentanoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

(1S,4R)-2,4,5-trichloro-2,5-cyclohexadiene-1-diol

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydropantoate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-galactonate

(2R,3S)-3-isopropylmalate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

2-chloroethanol

2-C-methyl-D-erythritol 4-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-(α-hydroxyethyl)thiamine diphosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

1,2,4-trichlorobenzene

1,2-dichloroethane

(R)-2,3-dihydroxy-3-methylpentanoate

3-amino-1-hydroxyacetone 1-phosphate

riboflavin

thiamine

nicotinamide

nicotinate

L-ascorbate

all-trans-retinol

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

pyridoxine

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxal

L-carnitine

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

22-hydroxy-3-oxochol-4-en-24-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

glycocholate

cholate

salicylaldehyde

kanamycin B

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

ferrichrome

coumarin

scopoletin

4-methylumbelliferone

(S)-nicotine

torulene

apo-4'-lycopenal

all-trans-phytoene

all-trans-3,4-didehydrolycopene

15-cis-phytoene

neurosporaxanthin

apo-4'-lycopenoate

geranyl diphosphate

(3R)-linalool

(3S)-linalool

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

all-trans-retinyl palmitate

ammonium hydroxide

(glutathion-S-yl)-4-hydroxy-2-nonenal

superoxide

nitric oxide

monodehydroascorbate radical

hydroxyl radical

DNA with lesion

hippurate

4-methylphenol

L-homocysteine

cobalt-precorrin-7

cobalt-precorrin-5B

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-6A

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-3

cobalt-precorrin-2

cob(I)yrinate a,c-diamide

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

cob(I)inamide

cobalt-sirohydrochlorin

cobalt-factor III

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobinamide

adenosylcobalamin 5'-phosphate

hemin

adenosylcobalamin

cob(I)alamin

cobyrinate

protoheme

bromochloromethane

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetate

fluoroacetaldehyde

3-chloro-cis,cis-muconate

5-chloro-5-deoxy-D-ribonate

3,5-dichloro-2-methyl-muconate

3,5-dichloro-2-methyl-muconolactone

2-chloro-5-methyl-dienelactone

(+)-2-chloromuconolactone

(+)-5-chloromuconolactone

2,3,5-trichloro-cis,cis-muconate

2,3-dichloro-cis,cis-muconate

2-chloroacetate

2,5-dichloro-cis,cis-muconate

2-chloro-cis,cis-muconate

2-chloromaleylacetate

(1R,2S)-3,6-dichlorocyclohexa-3,5-diene-1,2-diol

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

3-chlorobenzyl alcohol

3,6-dichlorocatechol

1,4-dichlorobenzene

3-chlorobenzaldehyde

4-chlorosalicylate

2,5-dichlorophenol

5-chlorosalicylate

5-chloro-3-methylcatechol

3,5-dichlorocatechol

4-chlorocatechol

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-5

precorrin-3A

precorrin-1

precorrin-6A

precorrin-2

precorrin-3B

precorrin-6B

precorrin-4

sirohydrochlorin

hydantoin

UTP

uracil

UDP

dTTP

dTMP

dTDP

orotate

dUTP

dUMP

dUDP

dCTP

dCMP

dCDP

cytosine

CTP

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

CDP

5,6-dihydrothymine

5,6-dihydrouracil

cytidine-3'-monophosphate

uridine 3'-monophosphate

5-fluorouracil

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-glucose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactofuranose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-β-L-iduronate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactose

UDP-α-D-xylose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-galactosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

dTDP-β-L-rhamnose

dTDP-α-D-glucose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-4-dehydro-β-L-rhamnose

CDP-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

thymine

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

CMP

UMP

guanine

adenine

purine

hypoxanthine

guanosine

inosine

xanthosine

adenosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

dGDP

dADP

dIDP

dGMP

dAMP

dITP

dGTP

dATP

ITP

GTP

ATP

XMP

IMP

GMP

AMP

IDP

GDP

ADP

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydropteroate

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

FMNH₂

FADH₂

FMN

FAD

2-hydroxychromene-2-carboxylate

S-(hydroxymethyl)glutathione

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

thiocyanate

thiophenol

methanethiol

furfuryl thiol

thiobenzoate

glutathione

thioanisole

furfuryl methyl sulfide

(S)-methyl thiobenzoate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

taurine

L-cysteate

3-sulfopyruvate

isethionate

methanesulfonate

1-butanesulfonate

(R)-S-lactoylglutathione

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

nitrous oxide

hydrogen cyanide

2,4-dinitrophenyl-S-glutathione

chloramphenicol 3-acetate

1-chloro-2,4-dinitrobenzene

linamarin

neolinustatin

linustatin

taxiphyllin

lotaustralin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

pristanate

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

siroheme

(Z,Z)-biliverdin-IX α

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylfarnesyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

3-octaprenyl-4-hydroxybenzoate

trimethyl sulfonium

Fe³⁺

H⁺

ammonium

K⁺

Cu²⁺

Zn²⁺

Fe²⁺

Mg²⁺

Co²⁺

sulfate

sulfite

selenide

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

phosphonate

phosphate

diphosphate

triphosphate

bromide

chloride

oxygen

hydrogen sulfide

2-iminosuccinate

(+)-7-epi-jasmonate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

a coenzyme-A group

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-methylglutaconyl-CoA

succinyl-CoA

methylacrylyl-CoA

malonyl-CoA

α-linolenoyl-CoA

L-carnitinyl-CoA

isovaleryl-CoA

isobutanoyl-CoA

glutaryl-CoA

(E)-glutaconyl-CoA

γ-butyrobetainyl-CoA

3'-dephospho-CoA

crotonobetainyl-CoA

(2E,5Z)-tetradecenoyl-CoA

(S)-3-aminobutanoyl-CoA

4-hydroxybenzoyl-CoA

linoleoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

itaconyl-CoA

(E)-2-methylcrotonoyl-CoA

acetyl-CoA

3-methylcrotonyl-CoA

(3S)-hydroxyadipyl-CoA

3-hydroxyisovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylbutanoyl-CoA

2-methylacetoacetyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

phytenoyl-CoA

crotonyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

2-carboxy-cerotoyl-CoA

cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

octanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

decanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxohexanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxodecanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

2-chloro-trans-dienelactone

L-galactono-1,4-lactone

2-methyl-trans-dienelactone

2-(2-chloro-4-methyl-5-oxofuran-2-yl)acetate

2-methyl-cis-dienelactone

5-chloro-3-methyl-cis-dienelactone

2-chloro-4-methyl-cis-dienelactone

2,5-dichloro-trans-dienelactone

5-chloro-trans-dienelactone

trans-dienelactone

2-chloro-cis-dienelactone

cis-dienelactone

D-glucono-1,5-lactone

indigo

coenzyme A

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

urate

toluene

naphthalene

4-tyrosol

8-hydroxypurine

6,8-dihydroxypurine

benzyl-6-hydroxy-2-cyclohexene-on-oyl

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-vinylguaiacol

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

benzyl alcohol

4-hydroxybenzoate

demethylmenaquinol-11

demethylmenaquinol-7

demethylmenaquinol-12

demethylmenaquinol-9

demethylmenaquinol-8

demethylmenaquinol-13

demethylmenaquinol-10

demethylmenaquinol-6

ubiquinol-8

menaquinol-8

menaquinol-13

menaquinol-12

menaquinol-11

menaquinol-10

menaquinol-9

menaquinol-7

menaquinol-6

3-demethylubiquinol-8

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

ferulate

coumarinate

(indol-3-yl)acetaldehyde

indole

cis-indole-2,3-dihydrodiol

DIMBOA

DIMBOA-β-D-glucoside

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

metanephrine

3-methoxy-4-hydroxyphenylglycol

normetanephrine

4-methylcatechol

(R)-adrenaline

catechol

(R)-noradrenaline

3,4-dihydroxyphenylglycolaldehyde

dopamine

3,4-dihydroxyphenylglycol

protocatechuate

2,3-dihydroxybenzoate

serotonin

2-phenylethylamine

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

phenylacetaldehyde

p-cumic aldehyde

4-methylbenzaldehyde

4-isopropylbenzyl alcohol

salicylate

benzoate

4-aminobenzoate

pyrazinamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

8-oxo-dGTP

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

8-oxo-GTP

5'-deoxyadenosine

cyclic-AMP

adenylo-succinate

NADH

NADPH

NAD⁺

NADP⁺

β-nicotinamide D-ribonucleotide

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-hydroxy-dATP

cyclic di-3',5'-guanylate

5-fluorocytosine

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-4-dehydro-6-deoxy-β-L-galactose

GDP-β-L-fucose

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

ADP-D-ribose

cyclic ADP-ribose

1-(β-D ribofuranosyl)nicotinamide

glycerol

D-ribitol

xylitol

D-sorbitol

L-iditol

galactitol

D-mannitol

D-xylulose

L-xylulose

D-ribulose

α-D-xylopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

keto-D-tagatose

keto-D-fructose

keto-L-sorbose

keto-D-sorbose

aldehydo-D-mannose

β-D-mannopyranose

aldehydo-D-glucose

β-D-glucopyranose

α-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

D-glyceraldehyde

glycolaldehyde

4-deoxy-L-threo-hex-4-enopyranuronate

maltotriose

β-D-cellobiose

raffinose

maltotetraose

stachyose

maltopentaose

maltohexaose

maltoheptaose

α-maltose

sucrose

melibiose

α,α-trehalose

aldehydo-D-galacturonate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3-dehydro-D-glucopyranose

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-glucopyranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

sucrose 6^G-phosphate

D-glyceraldehyde 3-phosphate

L-idonate

D-mannonate

aldehydo-L-galactonate

D-gluconate

D-altronate

L-gulonate

D-galactonate

L-α-amino-ε-keto-pimelate

D-serine

L-serine

glycine

L-tyrosine

L-threonine

L-glutamine

L-cysteine

L-asparagine

L-lysine

L-histidine

L-arginine

L-aspartate

L-glutamate

L-valine

L-tryptophan

L-proline

L-phenylalanine

L-methionine

L-leucine

L-selenocysteine

L-alanine

L-isoleucine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

(R)-3-amino-2-methylpropanoate

seleno-L-homocysteine

L-aspartyl-4-phosphate

D-nopaline

3-phospho-L-serine

D-octopine

mannopine

sarcosine

N-carbamoylglycine

N-acetyl-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formyl-L-methionine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L,L-diaminopimelate

L-cystathionine

L-norvaline

L-isoglutamine

L-ornithine

D-glutamate

D-alanine

D-aspartate

L-citrulline

S-sulfo-L-cysteine

S-adenosyl-L-methionine

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-canaline

L-aspartate 4-semialdehyde

L-4-hydroxyglutamate semialdehyde

L-homoserine

S-adenosyl-L-homocysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

choline

choline sulfate

betaine aldehyde

glycine betaine

(2Z)-2-aminobut-2-enoate

agmatine

N-acetylputrescine

putrescine

spermidine

diacetyl

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

ubiquinone-8

(R)-acetoin

methylglyoxal

(Z)-3-hexanal

formaldehyde

1-octanal

1-propanal

acetaldehyde

isobutanal

butan-1-al

(R)-lactaldehyde

(S)-lactaldehyde

phytenal

(E)-2-hexenal

(E)-2-hexenol

(3Z)-hex-3-en-1-ol

methanol

ethanol

propan-1-ol

butan-1-ol

phytol

ethylene glycol

(R)-propane-1,2-diol

myo-inositol

1D-chiro-inositol

scyllo-inositol

1-keto-D-chiro-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

3-methyl-cis,cis-muconate

chorismate

D-galactarate

D-glucarate

succinate

fumarate

(S)-malate

3-(carbamoylamino)-2-methylpropanoate

3-carboxy-cis,cis-muconate

trans-aconitate

cis-2-methylaconitate

cis-aconitate

(2R,3S)-2-methylisocitrate

(1Z,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

2-hydroxy-4-oxobutane-1,2,4-tricarboxylate

D-threo-isocitrate

propanoate

formate

acetate

pyruvate

(R)-lactate

(S)-lactate

butanoate

(R)-pantoate

5-deoxy-D-glucuronate

D-tagaturonate

aldehydo-D-glucuronate

decanoate

octanoate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

linoleate

arachidonate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

phytenate

stearate

palmitate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

(S)-NADHX

(R)-NADHX

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

AP site removed from DNA