an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

2-dehydro-3-deoxy-D-galactonate 6-phosphate

2-dehydro-3-deoxy-D-galactonate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

porphobilinogen

5-aminolevulinate

shikimate 3-phosphate

shikimate

phosphoenolpyruvate

CO₂

oxaloacetate

4-maleyl-acetoacetate

homogentisate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

4'-phosphopantetheine

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

1-deoxy-L-glycero-tetrulose 4-phosphate

thiamine diphosphate

thiamine phosphate

orotidine 5'-phosphate

citrate

5-dehydro-D-gluconate

histidinol

histidinal

(S)-dihydroorotate

oxalosuccinate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

3-deoxy-D-manno-octulosonate 8-phosphate

γ-L-glutamyl 5-phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

carbamoyl phosphate

3-deoxy-α-D-manno-2-octulosonate

lipid IV_A

lipid A disaccharide (E. coli)

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-enolpyruvoyl-shikimate 3-phosphate

3-oxopropanoate

N-(5-phosphoribosyl)-anthranilate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

L-histidinol phosphate

imidazole acetol-phosphate

urea

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

nicotinate adenine dinucleotide

lipid X

isopentenyl diphosphate

5-phospho-β-D-ribosylamine

ethanolamine

preuroporphyrinogen

O-acetyl-L-serine

hydrogen selenide

3-phosphooxypyruvate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-demethylubiquinol-6

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

3-deoxy-D-arabino-heptulosonate 7-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

prenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

glycerone phosphate

α-D-glucosamine 1-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5-dehydro-4-deoxy-D-glucarate

2,5-dioxopentanoate

5-amino-6-(D-ribitylamino)uracil

3-dehydroshikimate

3-dehydroquinate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

(S)-4-amino-5-oxopentanoate

(R)-pantothenate

formamide

acetoacetate

(R)-4'-phosphopantothenate

N-acetylglutamyl-phosphate

anthranilate

D-erythro-imidazole-glycerol-phosphate

N-acetyl-L-glutamate 5-semialdehyde

3-hydroxypropanoate

1-piperideine 6-carboxylate

4-oxoglutaramate

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

bisorganyltrisulfane

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-dehydropantoate

hydroxypyruvate

glycolate

propionamide

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

DNA without lesion

L-canavanine

4-hydroxy-2-nonenal

4-acetamidobutanoate

4-acetamidobutanal

N²-succinylglutamate

N²-succinyl-L-glutamate 5-semialdehyde

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

(S)-ureidoglycolate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

tartronate semialdehyde

2-aminoacetaldehyde

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

hydrogen peroxide

succinate semialdehyde

5-oxo-L-proline

(E)-glutaconate

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

oxalate

L-selenocystathionine

hydrogenobyrinate a,c-diamide

acetyl phosphate

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

(5R)-5-benzyl-hydantoin

(5S)-5-benzyl-hydantoin

N-carbamoyl-D-phenylglycine

D-phenylhydantoin

2-phenylethanol

2-methylbutanal

2-methylbutanol

3-methylbutanal

3-methylbutanol

isobutanol

indole-3-glycol aldehyde

indole-3-glycol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4S)-4-hydroxy-2-oxoheptanedioate

estrone 3-sulfate

3-β-hydroxyandrost-5-en-17-one 3-sulfate

3-ureidopropanoate

N-carbamoylputrescine

2-oleoylglycerol

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

dimethylmaleate

(R)-3-methylitaconate

isoquinolin-2(1H)-one

isoquinoline

4-fumaryl-acetoacetate

(S)-2-amino-6-oxohexanoate

norspermidine

carboxynorspermidine

carbonic acid

4-methyl-3-oxoadipate-enol-lactone

3-methylmuconolactone

muconolactone

methylamine

arsenite

4-amino-4-deoxychorismate

(R)-mandelate

(S)-mandelate

2-iminoacetate

ethylamine

N-ethylglycine

vanillin

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

benzoylsuccinyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

4-methyl-3-oxoadipate

L-gulono-1,4-lactone

(L-threonylcarbamoyl)adenylate

dethiobiotin

7,8-diaminopelargonate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

coproporphyrinogen III

pseudouridine 5'-phosphate

S-formylglutathione

2-phosphoglycolate

(S)-4-hydroxy-2-oxopentanoate

prephytoene diphosphate

N-succinyl-L,L-2,6-diaminopimelate

carbon monoxide

H₂

(2S)-4-acetamido-2-aminobutanoate

ectoine

γ-butyrobetaine

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

dihydroxyacetone

3-amino-1-hydroxyacetone 1-phosphate

glutathione disulfide

2-(α-hydroxyethyl)thiamine diphosphate

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1,7-bisphosphate

prephenate

β-nicotinate D-ribonucleotide

3-hydroxyanthranilate

N-Formyl-L-kynurenine

propanoyl phosphate

dimethyl sulfoxide

trimethylamine N-oxide

trimethylamine

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

pimeloyl-CoA

2-ketocyclohexane-1-carbonyl-CoA

β-D-ribosylnicotinate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

D-glycero-β-D-manno-heptose 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2,3-epoxy-2,3-dihydrobenzoyl-CoA

cis-3,4-dehydroadipyl-CoA

cis-3,4-dehydroadipyl-CoA semialdehyde

(S)-5-amino-3-oxohexanoate

2-maleylacetate

3-[(4-amino-6-chloro-1,3,5-triazin-2-yl)amino]benzenesulfonate

2,2'-disulfonyl azobenzene

phthalate

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

N-acetyl-D-muramate 6-phosphate

methylsalicylate

salicyl alcohol

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

3'-phosphoadenylyl-sulfate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

(R)-mevalonate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

malonate

2'-hydroxypseudobaptigenin

(3R)-sophorol

2-hydroxyformononetin

(lipoyl)adenylate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

2-hydroxy-3-oxosuccinate

meso-tartrate

L-tartrate

2-oxopent-4-enoate

5-phospho-α-D-ribose 1,2-cyclic phosphate

α-D-ribose-1-methylphosphonate 5-phosphate

3-mercaptopyruvate

L-quinate

dimethylsulfoniopropanoate

D-glucurono-6,3-lactone

propynoate

prop-2-ynal

3,4-dihydroxyphenylacetaldehyde

5-hydroxyindole acetate

4-imidazoleacetate

imidazole acetaldehyde

5-methylsalicylate

4-methylsalicylate

2-keto-D-gluconate

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

3-phenylpropanoate

xanthine

quinolinate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

3-(3-hydroxyphenyl)propanoate

3-(2,3-dihydroxyphenyl)propanoate

2,5-didehydro-D-gluconate

2-keto-L-gulonate

D-gluconate 6-phosphate

2-dehydro-6-phospho-D-gluconate

protoanemonin

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-methyl-2-oxopentanoate

propan-2-ol

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

5-(methylsulfanyl)-ribulose 1-phosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

S-methyl-5-thio-α-D-ribose 1-phosphate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

4-amino-2-methyl-5-pyrimidinemethanol

5-amino-6-(5-phospho-D-ribitylamino)uracil

cis,cis-muconate

N²-succinyl-L-arginine

N²-succinyl-L-ornithine

trans-2,3-dehydroadipyl-coA

3,6-lactone of 3-hydroxyadinyl-CoA

core oligosaccharide-lipid A (E. coli K-12 core type)

cyclohex-1-ene-1-carbonyl-CoA

2-hydroxy-cyclohexane-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

6-carboxyhex-2-enoyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

2-amino-3-carboxymuconate-6-semialdehyde

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

4-aminobutanoate

pseudouridine

butanoyl phosphate

crotonate

6-hydroxycyclohex-1-ene-1-carbonyl-CoA

6-oxocyclohex-1-ene-1-carbonyl-CoA

cyclohexane-1-carboxylate

cyclohexane-1-carbonyl-CoA

2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA

N-methylhydantoin

creatinine

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoate

1,4-dihydroxy-2-naphthoyl-CoA

(salicyl)adenylate

3-maleylpyruvate

hydrogenobyrinate

urocanate

4-imidazolone-5-propanoate

(2S)-2-isopropyl-3-oxosuccinate

(R)-4'-phosphopantothenoyl-L-cysteine

glutathioselenol

selenodiglutathione

autoinducer 2

S-ribosyl-L-homocysteine

ammonia

(2E,6E)-farnesol

(2E,6E)-farnesyl diphosphate

pristanate

hypoglycin B

L-α-amino-ε-keto-pimelate

L-kynurenine

L-methionine

L-cysteine

L-proline

L-tryptophan

L-alanine

L-phenylalanine

L-isoleucine

L-valine

glycine

L-selenocysteine

L-leucine

L-ornithine

L-serine

L-asparagine

L-histidine

L-tyrosine

L-glutamate

L-glutamine

L-threonine

L-aspartate

L-2,4-diaminobutanoate

L-lysine

L,L-diaminopimelate

L-isoglutamine

L-arginine

L-cystathionine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formyl-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-aspartate

N-formimino-L-glutamate

L-citrulline

L-homocysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-sulfo-L-cysteine

L-4-hydroxyglutamate semialdehyde

L-canaline

hypoglycin A

3-sulfino-L-alanine

O-succinyl-L-homoserine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

L-selenomethionine

seleno-L-homocysteine

L-saccharopine

3-hydroxy-L-kynurenine

N-carbamoylglycine

N-acetyl-L-glutamate

sarcosine

3-phospho-L-serine

D-glutamate

D-proline

D-alanine

D-aspartate

N-carbamoylsarcosine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

ADP

ATP

GDP

GTP

IDP

ITP

AMP

dADP

dGDP

GMP

XMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

isoguanine

8-oxo-dGTP

8-oxo-GTP

2'-deoxyinosine

2'-deoxyadenosine

dITP

dIDP

dGTP

dATP

XTP

dIMP

ppGpp

pppGpp

IMP

hypoxanthine

2'-deoxyguanosine

dGMP

dAMP

5,6-dihydrothymine

5,6-dihydrouracil

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-galactosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

adenine

guanine

uracil

thymine

preQ₁

dTMP

dUMP

dCMP

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

CDP

UDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

UTP

CTP

UMP

CMP

5-hydroxy-CTP

2-hydroxy-dATP

NAD⁺

NADP⁺

NADH

NADPH

cytidine-3'-monophosphate

uridine 3'-monophosphate

guanosine

adenosine

inosine

xanthosine

cytidine

uridine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

D-gluconate

D-mannonate

D-altronate

D-galactonate

L-gulonate

L-idonate

1-(β-D ribofuranosyl)nicotinamide

gentamicin C

N³-acetylgentamicin C

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

D-sedoheptulose 1,7-bisphosphate

4-phospho-D-erythronate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

β-D-fructofuranose

keto-D-fructose

keto-L-sorbose

glycolaldehyde

aldehydo-D-ribose

β-D-ribopyranose

β-D-ribofuranose

α-D-ribofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

L-glyceraldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

glycerol

L-iditol

D-sorbitol

galactitol

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4-O-phospho-α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

sucrose

aldehydo-D-galacturonate

salicylaldehyde

all-trans-retinol

all-trans-retinyl palmitate

geranyl diphosphate

apo-4'-lycopenal

all-trans neurosporene

all-trans-ζ-carotene

all-trans-phytoene

15-cis-phytoene

all-trans-lycopene

all-trans phytofluene

apo-4'-lycopenoate

enterobactin

ferrichrome

vanillylamine

(3R)-hydroxy-nonanoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-undecenoyl-CoA

4-cis-undecenoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

phytate

D-myo-inositol (1,2,3,5,6) pentakisphosphate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

protocatechuate

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

4-chlorocatechol

4-methylcatechol

catechol

2,3-dihydroxybenzoate

phytol

propan-1-ol

ethanol

butan-1-ol

methanol

(2E,6E)-farnesal

methylglyoxal

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

benzaldehyde

phytenal

(S)-lactaldehyde

acetaldehyde

1-octanal

isobutanal

1-propanal

formaldehyde

butan-1-al

menadione

caldariellaquinone

Reactive Blue 5

diacetyl

acetone

a coenzyme-A group

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

5-chloro-4-hydroxy-2-oxopentanoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

salicylate

vanillate

trans-cinnamate

4-aminobenzoate

benzoate

acetate

(R)-pantoate

L-carnitine

allantoate

5-chloro-5-deoxy-D-ribonate

gentisate

orotate

D-tagaturonate

(S)-1-pyrroline-5-carboxylate

octanoate

palmitate

decanoate

butanoate

stearate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

linoleate

oleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

γ-linolenate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

(2E,6E)-farnesoate

3-oxoadipate

formate

propanoate

(R)-lactate

(S)-lactate

(2R,3S)-2-methylisocitrate

(R)-glycerate

(R)-2-hydroxyglutarate

(R)-3-hydroxybutanoate

(2S,3S)-2-methylcitrate

cis-aconitate

cis-2-methylaconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

(3E)-2-oxohex-3-enedioate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

D-galactarate

D-glucarate

fumarate

succinate

(S)-malate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

4-tyrosol

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

urate

2,3-dihydroxy-trans-cinnamate

3-hydroxy-trans-cinnamate

5-chlorosalicylate

4-chlorosalicylate

3-amino-4-hydroxybenzaldehyde

3-amino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

3-acetylamino-4-hydroxybenzoate

4-methylphenol

menadiol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-7

3-demethylubiquinol-10

demethylmenaquinol-8

menaquinol-8

ubiquinol-9

ubiquinol-8

ubiquinol-6

ubiquinol-7

ubiquinol-10

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

preQ₀

hydrogen cyanide

acrylonitrile

(indole-3-yl)acetonitrile

(3R)-vestitone

7,8-dihydrolumazine

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin

7,8-dihydroneopterin 3'-phosphate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

7,8-dihydropteroate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

FMN

riboflavin

FAD

FMNH₂

reduced riboflavin

FADH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

hydantoin

cob(I)alamin

adenosylcobalamin

sirohydrochlorin

precorrin-2

precorrin-1

precorrin-3A

precorrin-3B

precorrin-4

precorrin-5

precorrin-6A

precorrin-6B

precorrin-8x

precorrin-7

thiamine

nicotinate

nicotinamide

pyridoxine 5'-phosphate

pyridoxine

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxal 5'-phosphate

pyridoxal

coenzyme A

(R)-lipoate

(R)-NADHX

(S)-NADHX

glycine betaine

D-glucono-1,5-lactone

trans-dienelactone

cis-dienelactone

3'-dephospho-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

acetyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-hydroxypropanoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

(2E,5Z)-tetradecenoyl-CoA

oxalyl-CoA

formyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

gentisyl-CoA

salicyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

L-carnitinyl-CoA

γ-butyrobetainyl-CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

benzoyl-CoA

(S)-3-aminobutanoyl-CoA

phenylacetyl-CoA

dihomo γ-linolenoyl-CoA

3-methylglutaconyl-CoA

acryloyl-CoA

glutaryl-CoA

crotonobetainyl-CoA

isobutanoyl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxooctadecanoyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

hexadecanedioyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

octanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

propanoyl-CoA

butanoyl-CoA

cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

2-carboxy-cerotoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

estrone

ethene

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

phenylacetate

(+)-7-epi-jasmonate

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

3-β-hydroxyandrost-5-en-17-one

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

methane

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

(S)-(+)-allantoin

acetamide

2-chloroacetate

3-chloro-cis,cis-muconate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

betaine aldehyde

choline

betaine aldehyde hydrate

putrescine

spermine

spermidine

N¹-acetylspermine

N-acetylputrescine

N¹-acetylspermidine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

trimethyl sulfonium

sulfate

sulfite

selenite

selenate

thiosulfate

OH^-

nitrite

nitrate

hydrogensulfite

hydrogencarbonate

molybdate

superoxide

phosphonate

phosphate

diphosphate

triphosphate

chloride

Fe³⁺

Cu²⁺

Co²⁺

Zn²⁺

Fe²⁺

Mo²⁺

ammonium

K⁺

H⁺

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

glutathione

(R)-S-lactoylglutathione

taurine

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

thiocyanate

methanethiol

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

nitric oxide

hydroxyl radical

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

(S)-3-hydroxy-isobutanoate

3-(all-trans-octaprenyl)benzene-1,2-diol

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-ureidoglycine

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

S⁰

oxygen

hydrogen sulfide

protoporphyrin IX

uroporphyrinogen-I

protoporphyrinogen IX

uroporphyrinogen-III

hemin

siroheme

protoheme

cob(II)yrinate a,c-diamide

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

2-iminobutanoate

2-iminosuccinate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate