an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

4'-phosphopantetheine

acetyl phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

prephenate

enol-phenylpyruvate

coproporphyrinogen III

(S)-2,3,4,5-tetrahydrodipicolinate

(R)-mevalonate diphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

phosphocholine

pseudouridine 5'-phosphate

3-dehydroquinate

3-dehydroshikimate

shikimate

shikimate 3-phosphate

prenyl diphosphate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

α-D-glucosamine 1-phosphate

phosphoenolpyruvate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

S-ribosyl-L-homocysteine

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

glycerone phosphate

6-aminohexanoate linear dimer

6-aminohexanoate

(lipoyl)adenylate

dihydrolipoamide

S-acetyldihydrolipoamide

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

urea

CO₂

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

isopentenyl diphosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

xanthine

hydrogen peroxide

glutathione disulfide

H₂O

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

6-aminohexanoate cyclic dimer

6-oxohexanoate

adipate

2-iminoacetate

autoinducer 2

pseudouridine

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

mercuriphenyl acetate

anthranilate

N-(5-phosphoribosyl)-anthranilate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

quinolinate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

5-phospho-β-D-ribosylamine

5-guanidino-2-oxopentanoate

propanoyl phosphate

thiamine phosphate

4-amino-4-deoxychorismate

nigerose

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

DNA without lesion

prephytoene diphosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

dihydroxyacetone

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(2E,6E)-farnesyl diphosphate

4-methylphenol

L-homocysteine

DNA with lesion

protoheme

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

oxygen

Hg⁰

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

superoxide

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

glutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

trimethyl sulfonium

hydrogencarbonate

phosphate

diphosphate

ammonium

H⁺

Na⁺

Fe²⁺

Ca²⁺

Zn²⁺

Cu²⁺

Cd²⁺

Mg²⁺

Hg²⁺

choline

agmatine

putrescine

cadaverine

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

fluoroacetaldehyde

fluoroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

6-caprolactam

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

nicotinamide

3'-dephospho-CoA

malonyl-CoA

2-methylacetoacetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

CoA-disulfide

acetyl-CoA

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

oleoyl-CoA

propanoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

D-glucono-1,5-lactone

FAD

FMN

FMNH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NADP⁺

NAD⁺

(R)-lipoate

coenzyme A

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

nicotinate

thiamine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

adenine

guanine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

inosine

adenosine

guanosine

xanthosine

hypoxanthine

dAMP

dGMP

dGTP

dATP

dGDP

dADP

GDP

ADP

IMP

GMP

AMP

XMP

GTP

ATP

dTMP

dCMP

uracil

dUMP

dUDP

UDP

dCDP

CDP

dUTP

dCTP

UTP

CTP

dTTP

CDP-choline

dTDP

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

thymine

CMP

UMP

preQ₁

preQ₀

salicylaldehyde

benzene

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

salicylate

4-aminobenzoate

benzoate

L-α-amino-ε-keto-pimelate

L-serine

glycine

L-leucine

L-alanine

L-glutamine

L-glutamate

L-arginine

L-histidine

L-lysine

L-aspartate

L-tyrosine

L-asparagine

L-cysteine

L-tryptophan

L-phenylalanine

D-alanine

L-aspartyl-4-phosphate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

L-citrulline

L-valine

L-isoleucine

L-ornithine

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-homoserine

meso-diaminopimelate

L-methionine

chorismate

fumarate

(S)-lactate

(R)-lactate

pyruvate

acetate

formate

octanoate

oleate

apo-4'-lycopenoate

phytenate

D-gluconate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxoglutarate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

methylglyoxal

acetaldehyde

butan-1-al

1-propanal

isobutanal

1-octanal

phytenal

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

ethanol

propan-1-ol

phytol

phytosphingosine

D-erythro-sphinganine

sphinganine 1-phosphate

phytosphingosine 1-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

all-trans-phytoene

15-cis-phytoene

maltotriose

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

sucrose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-D-fructofuranose

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

sucrose 6^F-phosphate

ADP-α-D-glucose

GDP-α-D-glucose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

pppGpp

ppGpp

5'-deoxyadenosine

adenylo-succinate

cyclic-AMP

cyclic-GMP

β-nicotinamide D-ribonucleotide

2-iminosuccinate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine