an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

succinate semialdehyde

4-aminobutanoate

H₂O

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

lipoamide

dihydrolipoamide

phosphoenolpyruvate

(S)-dihydroorotate

hydrogen peroxide

anthranilate

N-(5-phosphoribosyl)-anthranilate

3-deoxy-D-arabino-heptulosonate 7-phosphate

CO₂

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

4'-phosphopantetheine

orotidine 5'-phosphate

carbamoyl phosphate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroshikimate

shikimate

(L-threonylcarbamoyl)adenylate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

glycerone phosphate

DNA without lesion

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

thiamine diphosphate

thiamine phosphate

3-phosphooxypyruvate

prenyl diphosphate

prephenate

O-acetyl-L-serine

hydrogen selenide

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

4-methyl-2-oxopentanoate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

L-canavanine

canavaninosuccinate

L-arginino-succinate

O-ureido-L-homoserine

L-histidinol phosphate

imidazole acetol-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

shikimate 3-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

oxaloacetate

(R)-pantothenate

α-D-glucosamine 1-phosphate

acetyl phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

3-keto-β-D-galactose

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

S-ribosyl-L-homocysteine

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

dimethyl sulfoxide

4-amino-4-deoxychorismate

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

coproporphyrinogen III

xanthine

preuroporphyrinogen

porphobilinogen

ammonia

dehydroprephenate

3-(cyclohexa-1,3-dien-1-yl)-2-oxopropanoate

3-[(1S)-cyclohex-3-en-1-yl)]-2-oxopropanoate

L-3-cyclohex-2'-enylalanine

autoinducer 2

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

1-(methylsulfanyl)xylulose 5-phosphate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

hydroxypyruvate

carbon monoxide

4-amino-2-methyl-5-pyrimidinemethanol

quinolinate

2-dehydropantoate

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

L-homocysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

L-α-amino-ε-keto-pimelate

L-citrulline

L-alanine

L-glutamate

L-serine

L-glutamine

L-tryptophan

glycine

L-aspartate

L-threonine

L-histidine

L-asparagine

L-isoleucine

L-proline

L-leucine

L-valine

L-tyrosine

L-arginine

L-lysine

L-methionine

L-cysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-sulfo-L-cysteine

L-homoserine

L-ornithine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-cystathionine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

L-selenomethionine

seleno-L-homocysteine

3-phospho-L-serine

O-acetyl-L-homoserine

D-glutamate

D-alanine

D-aspartate

β-alanine

(S)-3-amino-2-methylpropanoate

ATP

ADP

dADP

dATP

GDP

GTP

dGDP

dGTP

GMP

2'-deoxyinosine

2'-deoxyadenosine

5'-deoxyadenosine

XMP

IMP

ITP

dIMP

dITP

XTP

hypoxanthine

2'-deoxyguanosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

adenylo-succinate

AMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenine

guanine

uracil

NADH

NADPH

NAD⁺

NADP⁺

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

dTMP

dUMP

CMP

UMP

UDP

CDP

CTP

UTP

UDP-α-D-glucose

ADP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

GDP-α-D-mannose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

inosine

adenosine

guanosine

xanthosine

5'-deoxy-5'-fluoroadenosine

salinosporamide A

orotate

(S)-1-pyrroline-5-carboxylate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

FADH₂

riboflavin

FAD

FMN

urate

menadiol

3-demethylubiquinol-8

menaquinol-8

ubiquinol-8

demethylmenaquinol-8

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

5-chloro-5-deoxy-D-ribono-γ-lactone

succinyl-CoA

3'-dephospho-CoA

acetyl-CoA

(+)-7-epi-jasmonoyl-CoA

dihomo γ-linolenoyl-CoA

isobutanoyl-CoA

4-chloro-3-hydroxybutyryl-CoA

4-chloro-crotonyl-CoA

chloroethylmalonyl-CoA

methylacrylyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

propanoyl-CoA

(S)-malyl-CoA

XXXG xyloglucan oligosaccharide

maltotriose

allolactose

sucrose

α-lactose

α,α-trehalose

maltotetraose

maltohexaose

maltoheptaose

maltopentaose

XXLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XLLG xyloglucan oligosaccharide

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

β-D-glucopyranose

α-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

glycolaldehyde

5-chloro-5-deoxy-D-ribose

D-xylulose

D-ribulose

L-ribulose

keto-D-fructose

β-D-fructofuranose

N-acetyl-β-D-glucosamine

N-acetyl-α-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

glycerol

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3'-ketolactose

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

sucrose 6^F-phosphate

a thiol group

(S)-lactaldehyde

acetaldehyde

formaldehyde

menadione

diacetyl

(2R)-homocitrate

cis-homoaconitate

acetate

5-chloro-5-deoxy-D-ribonate

(R)-pantoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

2-oxoglutarate

pyruvate

5-chloro-4-hydroxy-2-oxopentanoate

glyoxylate

2-oxobutanoate

formate

(S)-lactate

(R)-lactate

(R)-glycerate

chorismate

succinate

fumarate

(S)-malate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

(+)-7-epi-jasmonate

glycine betaine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

dimethyl sulfide

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

molybdate

selenide

superoxide

hydrogencarbonate

thiosulfate

nitrite

nitrate

chloride

phosphate

diphosphate

H⁺

ammonium

Fe²⁺

trimethyl sulfonium

pyridoxal 5'-phosphate

(S)-NADHX

(R)-NADHX

coenzyme A

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

hydrogen sulfide

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoheme

DNA with lesion