an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

autoinducer 2

2-amino-3-carboxymuconate-6-semialdehyde

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

4-amino-2-methyl-5-pyrimidinemethanol

L-arginino-succinate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

carbon monoxide

N⁵-carboxyaminoimidazole ribonucleotide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

DNA without lesion

oxaloacetate

5-oxo-L-proline

pimeloyl-CoA

8-amino-7-oxononanoate

α-D-glucosamine 1-phosphate

(R)-mevalonate diphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

(R)-pantothenate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

D-gluconate 6-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

selenophosphate

(S)-dihydroorotate

carbamoyl phosphate

(L-threonylcarbamoyl)adenylate

glutathione disulfide

acetoacetate

4-amino-4-deoxychorismate

shikimate

3-dehydroshikimate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

L-histidinol phosphate

histidinol

hydrogen selenide

O-acetyl-L-serine

γ-L-glutamyl 5-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

(lipoyl)adenylate

dihydroxyacetone

glycerone phosphate

nicotinate adenine dinucleotide

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

S-ribosyl-L-homocysteine

acetyl phosphate

β-nicotinate D-ribonucleotide

quinolinate

2-(α-hydroxyethyl)thiamine diphosphate

dihydrolipoamide

lipoamide

prephenate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

thiamine diphosphate

phosphoenolpyruvate

isopentenyl diphosphate

prenyl diphosphate

6-phospho D-glucono-1,5-lactone

hydrogen peroxide

CO₂

orotidine 5'-phosphate

4-aminobutanoate

succinate semialdehyde

xanthine

H₂O

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

phosphite

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

(R)-lipoate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

glycine betaine

FMN

FAD

(S)-NADHX

(R)-NADHX

NADP⁺

NAD⁺

NADH

NADPH

riboflavin

thiamine

nicotinamide

nicotinate

(2E,6E)-farnesyl diphosphate

H⁺

ammonium

selenide

hydrogencarbonate

thiosulfate

superoxide

phosphonate

phosphate

diphosphate

glutathione

(R)-S-lactoylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

glycerol

butan-1-ol

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

N-acetyl-β-neuraminate

4-aminobenzoate

butanoate

D-mannonate

acetate

orotate

(S)-1-pyrroline-5-carboxylate

L-cysteine

L-tyrosine

L-serine

L-glutamine

L-threonine

glycine

L-aspartate

L-glutamate

L-lysine

L-histidine

L-arginine

D-aspartate

D-glutamate

D-serine

D-alanine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-formimino-L-glutamate

O-acetyl-L-homoserine

L-methionine

L-leucine

L-selenocysteine

L-alanine

L-proline

L-ornithine

L-cystathionine

L-citrulline

L-homoserine

O-succinyl-L-homoserine

S-sulfo-L-cysteine

L-homocysteine

L-glutamate-5-semialdehyde

hypoglycin A

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

chorismate

(4S)-4-hydroxy-2-oxoglutarate

fumarate

succinate

(R)-lactate

formate

pyruvate

glyoxylate

2-oxoglutarate

2-oxobutanoate

glycolaldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

acetaldehyde

butan-1-al

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

GDP-α-D-mannose

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

sucrose 6^G-phosphate

sucrose 6^F-phosphate

α-lactose 6'-phosphate

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-galactose 6-phosphate

β-D-galactose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-fructofuranose

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

sucrose

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

3'-dephospho-CoA

acetyl-CoA

crotonyl-CoA

oleoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

urate

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

inosine

xanthosine

guanosine

adenosine

hypoxanthine

dIMP

dITP

dGTP

dATP

dGDP

dADP

XTP

ITP

GTP

ATP

GDP

ADP

AMP

XMP

IMP

GMP

dCTP

dTTP

dUTP

dTDP

dUMP

dTMP

dUDP

UTP

CTP

CDP

dCMP

dCDP

UDP

uracil

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

hypoglycin B

2-iminosuccinate

2-iminobutanoate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

DNA with lesion

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate