an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

CO₂

H₂O

hydrogen peroxide

1-deoxy-L-glycero-tetrulose 4-phosphate

thiamine diphosphate

thiamine phosphate

α-D-glucosamine 1-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

phosphoenolpyruvate

oxaloacetate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

3-methyl-2-oxobutanoate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

muconolactone

4-methyl-3-oxoadipate-enol-lactone

3-methylmuconolactone

3-deoxy-D-manno-octulosonate 8-phosphate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

lipid A disaccharide (E. coli)

lipid X

N-acetyl-L-glutamate 5-semialdehyde

4-aminobutanoate

3-oxopropanoate

succinate semialdehyde

urea

3-deoxy-α-D-manno-2-octulosonate

S-formylglutathione

L-histidinol phosphate

imidazole acetol-phosphate

histidinol

histidinal

4-methyl-3-oxoadipate

citrate

indole-3-glycol aldehyde

indole-3-glycol

2-methylbutanal

2-methylbutanol

isobutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

3-methylbutanal

3-methylbutanol

2-phenylethanol

cis,cis-muconate

urea-1-carboxylate

coproporphyrinogen III

anthranilate

N-(5-phosphoribosyl)-anthranilate

4-amino-4-deoxychorismate

oxalosuccinate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

propane-1,3-diamine

(indol-3-yl)pyruvate

(R)-4'-phosphopantothenate

(R)-pantothenate

7,8-diaminopelargonate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

8-amino-7-oxononanoate

pimeloyl-CoA

dethiobiotin

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

2,3-didehydroadipyl-CoA

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-hydroxypropanoate

carbamoyl phosphate

chloramphenicol

lipoamide

dihydrolipoamide

nicotinate adenine dinucleotide

4'-phosphopantetheine

isopentenyl diphosphate

3'-phosphoadenylyl-sulfate

acetoacetate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroshikimate

3-dehydroquinate

(2-hydroxyphenyl)acetate

enol-phenylpyruvate

homogentisate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

glycerone phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

ethanolamine

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

O-acetyl-L-serine

(R)-4'-phosphopantothenoyl-L-cysteine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

4-hydroxy-2-nonenal

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(25S)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

hydroxypyruvate

shikimate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

L-selenocystathionine

xanthine

N-acetylglutamyl-phosphate

porphobilinogen

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

orotidine 5'-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

S-acetyldihydrolipoamide

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

α-ribazole

4-fumaryl-acetoacetate

4-maleyl-acetoacetate

D-erythro-imidazole-glycerol-phosphate

shikimate 3-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

3-phosphooxypyruvate

(S)-dihydroorotate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

N²-succinylglutamate

γ-glutamyl-L-putrescine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

(2S)-2-isopropylmalate

lipid IV_A

phenylacetone

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

glycolate

2-phosphoglycolate

3-demethylubiquinol-6

quinolinate

α-D-galactosyl-diphosphoundecaprenol

(S)-2,3,4,5-tetrahydrodipicolinate

γ-L-glutamyl 5-phosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

tartronate semialdehyde

hydrogen selenide

2-dehydropantoate

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(D-ribitylamino)uracil

L-canavanine

preuroporphyrinogen

prephenate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

3-phenylpropanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

acetyl phosphate

1,6-anhydro-N-acetyl-β-muramate

4-methylmuconolactone

DNA without lesion

N-ethylsuccinimide

N-ethylmaleimide

dimethyl sulfoxide

4-(γ-L-glutamylamino)butanoate

4-(γ-L-glutamylamino)butanal

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

4-acetamidobutanoate

4-acetamidobutanal

2-maleylacetate

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(E)-2-benzylidenesuccinyl-CoA

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

3-(2,3-dihydroxyphenyl)propanoate

N-acetyl-D-muramate 6-phosphate

S-ribosyl-L-homocysteine

S-methyl-5-thio-α-D-ribose 1-phosphate

S-methyl-5'-thioadenosine

5-deoxy-α-ribose 1-phosphate

5-(methylsulfanyl)-α-D-ribose

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

β-D-fructose 2,6-bisphosphate

aminoacetone

3-dehydrocarnitine

formamide

carbonic acid

malonate

cyclohexane-1-carbonyl-CoA

cyclohexane-1-carboxylate

cyclohex-1-ene-1-carbonyl-CoA

2-ketocyclohexane-1-carbonyl-CoA

(L-threonylcarbamoyl)adenylate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

6-amino-2-oxohexanoate

2-iminoacetate

ethylamine

N-ethylglycine

methylamine

(+)-muconolactone

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

L-β-lysine

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

propionamide

acrylate

acrylamide

salicyl alcohol

methylsalicylate

glutathione disulfide

ammonia

(R)-1-amino-2-propanol O-2-phosphate

dialurate

(3S,5S)-3,5-diaminohexanoate

(S)-5-amino-3-oxohexanoate

H₂

carbon monoxide

4-amino-2-methyl-5-pyrimidinemethanol

1,4-dihydroxy-2-naphthoate

2-hydroxy-cyclohexane-1-carbonyl-CoA

cyclohex-1,5-diene-1-carbonyl-CoA

6-carboxyhex-2-enoyl-CoA

3-hydroxypimeloyl-CoA

3-oxopimeloyl-CoA

autoinducer 2

trimethylaminoacetone

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

5-(methylsulfanyl)-ribulose 1-phosphate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

3-(3-hydroxyphenyl)propanoate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

2-amino-3-carboxymuconate-6-semialdehyde

N⁵-carboxyaminoimidazole ribonucleotide

1-(methylsulfanyl)xylulose 5-phosphate

glutathioselenol

selenodiglutathione

7-epicholate

pimelate

α-D-galacturonate 1-phosphate

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

5-aminopentanoate

1-pyrroline

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

L-dehydro-ascorbate

1-piperideine-2-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

cyclic-2,3-O-oxalyl-L-threonate

bisorganyltrisulfane

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

preQ₀

hydrogen cyanide

acrylonitrile

(indole-3-yl)acetonitrile

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

superoxide

monodehydroascorbate radical

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

1-oleoyl-2-lyso-glycerone phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

(2R)-2,3-dihydroxy-3-methylbutanoate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2,3-diphospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

hydrogen sulfide

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

Mg-protoporphyrin

magnesium-protoporphyrin IX 13-monomethyl ester

siroheme

protoheme

protochlorophyllide a

chlorophyllide a

3,8-divinyl protochlorophyllide a

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobinamide

cob(I)inamide

adenosylcobalamin

cob(I)alamin

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

adenosylcobalamin 5'-phosphate

cobyrinate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobyrate

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-sirohydrochlorin

cobalt-precorrin-3

cobalt-factor III

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

phenylacetate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

(2E,6E)-farnesyl diphosphate

pristanate

L-α-amino-ε-keto-pimelate

L-glutamine

L-alanine

L-serine

glycine

L-proline

L-leucine

L-histidine

L-lysine

L-arginine

L-glutamate

D-glutamate

β-alanine

(R)-β-lysine

(S)-3-amino-2-methylpropanoate

L-citrulline

L-valine

L-isoleucine

L-aspartate

L-tryptophan

L-asparagine

L-tyrosine

L-phenylalanine

L-threonine

L-methionine

L-cysteine

L-homocysteine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

L-ornithine

O-phospho-L-homoserine

L-homoserine

S-sulfo-L-cysteine

L-glutamate-5-semialdehyde

1-aminocyclopropane-1-carboxylate

O-succinyl-L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-2,4-diaminobutanoate

L-aspartyl-4-phosphate

L-cystathionine

L,L-diaminopimelate

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

seleno-L-homocysteine

D-nopaline

L-2-amino-3-oxobutanoate

3-phospho-L-serine

O-acetyl-L-homoserine

sarcosine

N-acetyl-L-methionine

N-acetyl-L-glutamate

D-alanine

D-lysine

ADP

ATP

GDP

dGDP

dADP

1-(5-phospho-β-D-ribosyl)-ATP

2'-deoxyguanosine

dGTP

GTP

XMP

GMP

IMP

IDP

ITP

5'-deoxyadenosine

adenylo-succinate

2'-deoxyinosine

2'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

hypoxanthine

pppGpp

ppGpp

dATP

dITP

dIDP

cyclic-AMP

dIMP

XTP

dGMP

dAMP

AMP

adenosine

xanthosine

guanosine

inosine

cytidine

uridine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

NADPH

NADH

NADP⁺

NAD⁺

preQ₁

adenine

guanine

uracil

cyclic di-3',5'-guanylate

dUDP

dCDP

dTDP

dUTP

dCTP

dTTP

dUMP

dCMP

dTMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

CMP

UMP

UDP

CDP

UTP

CTP

cytidine-3'-monophosphate

uridine 3'-monophosphate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

ADP-D-ribose

cyclic ADP-ribose

GDP-α-D-mannose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CMP-3-deoxy-β-D-manno-octulosonate

sirohydrochlorin

precorrin-2

precorrin-1

orotate

(S)-1-pyrroline-5-carboxylate

7,8-dihydrolumazine

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

6,7-dimethyl-8-(1-D-ribityl)lumazine

FMNH₂

FADH₂

reduced riboflavin

FAD

FMN

riboflavin

4-methylphenol

chloramphenicol 3-acetate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

4-tyrosol

4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

urate

salicylaldehyde

phenol

trans-cinnamate

salicylate

2,3-dihydroxybenzoate

protocatechuate

4-aminobenzoate

benzoate

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxy-trans-cinnamate

3-hydroxy-trans-cinnamate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

3-methoxy-4-hydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

catechol

3-methylcatechol

3-sulfocatechol

4-methylcatechol

3-demethylubiquinol-7

3-demethylubiquinol-10

3-demethylubiquinol-8

3-demethylubiquinol-9

menaquinol-13

menaquinol-12

menaquinol-7

menaquinol-6

menaquinol-10

menaquinol-8

menaquinol-9

menaquinol-11

ubiquinol-7

ubiquinol-10

ubiquinol-8

ubiquinol-6

ubiquinol-9

demethylmenaquinol-13

demethylmenaquinol-12

demethylmenaquinol-7

demethylmenaquinol-6

demethylmenaquinol-10

demethylmenaquinol-8

demethylmenaquinol-9

demethylmenaquinol-11

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1,2-dibutyrin

tributyrin

trehalose-cis-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-retinyl palmitate

all-trans-retinol

apo-4'-lycopenal

zeinoxanthin

apo-4'-lycopenoate

α-carotene

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

trans-dienelactone

cis-dienelactone

L-galactono-1,4-lactone

D-glucono-1,5-lactone

benzyl acetate

acetyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

succinyl-CoA

(3S)-citryl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

methylacrylyl-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

phenylacetyl-CoA

3-hydroxypropanoyl-CoA

3'-dephospho-CoA

3-methylglutaconyl-CoA

3-methylcrotonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

4-hydroxybenzoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

(25R)-3α,7α-dihydroxy-5β-cholestanoyl-CoA

(25S)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

(25R)-3α,7α,12α-trihydroxy-5β-cholestanoyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

isobutanoyl-CoA

4-hydroxybutanoyl-CoA

isovaleryl-CoA

(2E,5Z)-tetradecenoyl-CoA

dihomo γ-linolenoyl-CoA

glutaryl-CoA

(E)-glutaconyl-CoA

(S)-3-aminobutanoyl-CoA

benzoyl-CoA

2-methylbutanoyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

pristanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

propanoyl-CoA

butanoyl-CoA

(Z)-15-tetracosenoyl-CoA

hexadecanedioyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

3-oxodecanoyl-CoA

3-oxododecanoyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxooctadecanoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dodec-2-enoyl-CoA

(2E)-octadec-2-enoyl-CoA

crotonyl-CoA

D-gluconate

aldehydo-L-galactonate

L-gulonate

1-(β-D ribofuranosyl)nicotinamide

sucrose

α,α-trehalose

keto-D-fructose

keto-L-sorbose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-glucopyranose

β-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine 1-phosphate

glycerol

D-sorbitol

L-iditol

galactitol

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

aldehydo-D-galacturonate

a coenzyme-A group

3-(N-morpholino)propanal

(S)-lactaldehyde

acetaldehyde

formaldehyde

1-propanal

isobutanal

butan-1-al

1-octanal

phytenal

methylglyoxal

diacetyl

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

cis-2-methylaconitate

(2R,3S)-2-methylisocitrate

cis-aconitate

(2S,3S)-2-methylcitrate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

2-oxoglutarate

pyruvate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

octanoate

decanoate

formate

acetate

propanoate

butanoate

(R)-lactate

(S)-lactate

4-hydroxybutanoate

chorismate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

succinate

fumarate

(S)-malate

(R)-pantoate

L-carnitine

aldehydo-D-glucuronate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

palmitate

oleate

γ-linolenate

(3E,5Z)-tetradecadienoate

stearate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

nicotinamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

acetamide

(+)-7-epi-jasmonate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

cholate

glycocholate

isocholate

3-dehydrocholate

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,5-cyclohexadiene-1,2-diol-1-carboxylate

myo-inositol

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 5-monophosphate

sphingosine

sphingosine 1-phosphate

1-octanol

ethanol

propan-1-ol

phytol

butan-1-ol

methanol

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

glycine betaine

betaine aldehyde

choline

putrescine

4-aminobutanal

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

glutathione

methanethiol

thiocyanate

S-sulfanylglutathione

3-sulfopyruvate

L-cysteate

1-butanesulfonate

isethionate

3-(N-morpholino)propanesulfonate

methanesulfonate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

dimethyl sulfone

methanesulfinate

(R)-S-lactoylglutathione

Fe³⁺

Zn²⁺

Mo²⁺

Fe²⁺

Cu²⁺

Mg²⁺

Co²⁺

H⁺

ammonium

K⁺

trimethyl sulfonium

hydrogencarbonate

nitrite

nitrate

molybdate

sulfite

selenate

thiosulfate

hydrogensulfite

selenite

sulfate

chloride

phosphonate

phosphate

diphosphate

triphosphate

nicotinate

thiamine

L-ascorbate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine

pyridoxal

pyridoxamine

D-carnitine

(S)-NADHX

(R)-NADHX

coenzyme A