an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

urea

aminoacetone

1-piperideine 6-carboxylate

ammonia

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

H₂O

7-carboxy-7-deazaguanine

mesaconate

5-enolpyruvoyl-shikimate 3-phosphate

(S)-dihydroorotate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

CO₂

orotidine 5'-phosphate

(L-threonylcarbamoyl)adenylate

glycerone phosphate

3-deoxy-α-D-manno-2-octulosonate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

4'-phosphopantetheine

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

3-amino-1-hydroxyacetone 1-phosphate

norspermidine

carboxynorspermidine

lipoamide

dihydrolipoamide

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

3-deoxy-D-manno-octulosonate 8-phosphate

phosphoenolpyruvate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

carbamoyl phosphate

coproporphyrinogen III

4-amino-4-deoxychorismate

2-dehydropantoate

3-methyl-2-oxobutanoate

2-C-methyl-D-erythritol 4-phosphate

4-imidazolone-5-propanoate

urocanate

xanthine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

prenyl diphosphate

thiamine diphosphate

thiamine phosphate

(S)-2-amino-6-oxohexanoate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

acetyl phosphate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

1,4-dihydroxy-2-naphthoate

DNA without lesion

shikimate 3-phosphate

shikimate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

butanoyl phosphate

oxaloacetate

3-dehydroshikimate

lipid A disaccharide (E. coli)

lipid X

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

4-aminobutanoate

(R)-pantothenate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

(S)-2,3,4,5-tetrahydrodipicolinate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

hydrogen peroxide

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

lipid IV_A

glutathione disulfide

hydrogen selenide

glutathioselenol

selenodiglutathione

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

formamide

L-arginino-succinate

autoinducer 2

S-ribosyl-L-homocysteine

L-homocysteine

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-citramalate

α-D-glucosamine 6-phosphate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

oxygen

hydrogen sulfide

protoporphyrinogen IX

Mg-protoporphyrin

protoporphyrin IX

uroporphyrinogen-III

protoheme

adenosylcobalamin

cob(I)alamin

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

DNA with lesion

D-alanyl-D-alanine

L-α-amino-ε-keto-pimelate

L-serine

glycine

L-glutamine

L-leucine

L-alanine

L-lysine

L-histidine

L-arginine

L-glutamate

D-glutamate

β-alanine

L-citrulline

L-valine

L-isoleucine

L-aspartate

L-threonine

L-asparagine

L-methionine

L-tyrosine

L-cysteine

L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-ornithine

meso-diaminopimelate

L-cystathionine

L-isoglutamine

L-aspartyl-4-phosphate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

L-saccharopine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

(2S, 3S)-3-methylaspartate

D-alanine

ADP

ATP

5'-deoxyadenosine

GDP

GTP

adenylo-succinate

GMP

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

hypoxanthine

IMP

XMP

2'-deoxyguanosine

2'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

2'-deoxyinosine

cyclic-AMP

IDP

ITP

dADP

dATP

dGDP

dGTP

AMP

5'-deoxy-5'-fluoroadenosine

NADH

NADPH

NAD⁺

NADP⁺

preQ₁

guanine

adenine

cytidine-3'-monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCDP

dTDP

dUDP

dTTP

dUTP

dCTP

dCMP

dTMP

dUMP

β-nicotinamide D-ribonucleotide

UMP

CMP

UDP

CDP

CTP

UTP

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-mannosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CMP-3-deoxy-β-D-manno-octulosonate

adenosine

guanosine

xanthosine

inosine

2'-deoxyuridine

thymidine

2'-deoxycytidine

cytidine

uridine

orotate

6-carboxy-5,6,7,8-tetrahydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

riboflavin

FAD

FMN

2-iminopropanoate

urate

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

menaquinol-8

demethylmenaquinol-8

4-aminobenzoate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

succinyl-CoA

3'-dephospho-CoA

acetyl-CoA

propanoyl-CoA

sucrose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

α-D-galactopyranose

β-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

β-D-fructofuranose

N-acetyl-α-D-mannosamine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

acetaldehyde

2-oxoglutarate

pyruvate

2-oxobutanoate

acetate

formate

propanoate

butanoate

chorismate

succinate

fumarate

(S)-malate

(R)-pantoate

nicotinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

agmatine

2-aminoprop-2-enoate

glutathione

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

Cd²⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

hydrogencarbonate

selenate

selenite

sulfate

phosphate

diphosphate

triphosphate

nicotinate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

(R)-NADHX

(S)-NADHX

coenzyme A

preQ₀