an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

selenodiglutathione

glutathioselenol

pseudouridine

5-amino-6-(5-phospho-D-ribosylamino)uracil

formamide

7-epicholate

acetoacetate

2-amino-3-carboxymuconate-6-semialdehyde

(S)-ureidoglycolate

carbon monoxide

α-D-glucosamine 1-phosphate

N-acetyl-D-muramate 6-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

4-amino-2-methyl-5-pyrimidinemethanol

5,6-dimethylbenzimidazole

dialurate

(R)-1-amino-2-propanol O-2-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

2-(α-hydroxyethyl)thiamine diphosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

urea

2-dehydro-3-deoxy-D-gluconate 6-phosphate

preuroporphyrinogen

DNA without lesion

N-acetylglutamyl-phosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

β-D-ribosylnicotinate

5-methylcytosine

β-L-arabinose 1-phosphate

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-glucuronide

(L-threonylcarbamoyl)adenylate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

isochorismate

α-D-galactosyl-diphosphoundecaprenol

histamine

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine 4-sulfate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

(lipoyl)adenylate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(1S,4S)-2,5-dichloro-2,5-cyclohexadiene-1,4-diol

hydroxylamine

2-oleoylglycerol

luteolin 7-O-β-D-diglucuronide

4-amino-4-deoxychorismate

α-ribazole 5'-phosphate

α-ribazole

imidazole acetol-phosphate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

carboxynorspermidine

norspermidine

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

muconolactone

(+)-muconolactone

cis,cis-muconate

D-erythro-imidazole-glycerol-phosphate

arsenite

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

thiamine diphosphate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

glutathione disulfide

H₂

vanillin

prephenate

lipid IV_A

3-β-hydroxyandrost-5-en-17-one 3-sulfate

estrone 3-sulfate

coproporphyrinogen III

hydrogen selenide

3-deoxy-D-glycero-2,5-hexodiulosonate

5-dehydro-D-gluconate

O-acetyl-L-serine

2-dehydro-3-deoxy-D-gluconate

(S)-2,3,4,5-tetrahydrodipicolinate

3-keto-β-D-galactose

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

ammonia

4-aminobutanoate

γ-L-glutamyl 5-phosphate

isopentenyl diphosphate

orotidine 5'-phosphate

L-canavanine

N-acetyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

thiamine phosphate

lipid X

lipid A disaccharide (E. coli)

2-phosphoglycolate

glycolate

prenyl diphosphate

shikimate

pseudouridine 5'-phosphate

(R)-pantothenate

3-deoxy-D-manno-octulosonate 8-phosphate

5-phospho-β-D-ribosylamine

1,4-dihydroxy-2-naphthoyl-CoA

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

quinolinate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

hydroxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

3-phosphooxypyruvate

2-dehydropantoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

pimeloyl-CoA

8-amino-7-oxononanoate

(S)-dihydroorotate

hydrogen peroxide

anthranilate

N-(5-phosphoribosyl)-anthranilate

5-amino-6-(D-ribitylamino)uracil

L-histidinol phosphate

histidinal

histidinol

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

xanthine

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

oxalosuccinate

citrate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

5-enolpyruvoyl-shikimate 3-phosphate

dethiobiotin

glycerone phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

carbamoyl phosphate

urocanate

4-imidazolone-5-propanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

butanoyl phosphate

acetyl phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

ethanolamine

oxaloacetate

CO₂

phosphoenolpyruvate

3-dehydroquinate

3-dehydroshikimate

4'-phosphopantetheine

H₂O

chloramphenicol

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

5-hydroxyindole thiazolidine carboxylate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

pyruvic oxime

4-oxoglutaramate

aminoacetone

L-homocysteine

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

DNA with lesion

phenylacetate

ethylphosphate

cobalt-factor III

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

adenosyl-cobinamide phosphate

cob(I)yrinate a,c-diamide

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

Mg-protoporphyrin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

cob(I)alamin

adenosylcobalamin

cob(II)yrinate c-monoamide

cobyrinate

cob(II)yrinate a,c-diamide

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-4

cobalt-precorrin-5A

protoheme

hydrogen cyanide

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

hydrogen sulfide

oxygen

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

superoxide

monodehydroascorbate radical

hydroxyl radical

chloramphenicol 3-acetate

N-acetyl-β-neuraminate

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

S-(hydroxymethyl)glutathione

thiocyanate

glutathione

methanethiol

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

N-acetyl-D-galactosamine 6-O-sulfate

(R)-S-lactoylglutathione

Fe³⁺

Na⁺

K⁺

H⁺

ammonium

Fe²⁺

Co²⁺

Mg²⁺

Ca²⁺

trimethyl sulfonium

selenite

sulfite

thiosulfate

selenate

hydrogencarbonate

hydrogensulfite

OH^-

sulfate

phosphate

triphosphate

diphosphate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

cadaverine

choline sulfate

choline

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

2,5-dichloro-p-quinol

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

2,5-dichloro-p-quinone

allantoate

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

estrone

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

3-dehydrocholate

isocholate

glycocholate

cholate

3-β-hydroxyandrost-5-en-17-one

linoleoyl-CoA

α-linolenoyl-CoA

phenylacetyl-CoA

succinyl-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3'-dephospho-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

phytenoyl-CoA

oleoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

L-galactono-1,4-lactone

FAD

FMNH₂

FMN

FADH₂

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

(R)-lipoate

coenzyme A

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

L-ascorbate

thiamine

nicotinate

riboflavin

pyridoxine

pyridoxamine

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-6B

precorrin-1

precorrin-2

precorrin-6A

precorrin-5

precorrin-3A

precorrin-3B

precorrin-4

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

ITP

GTP

ATP

cytosine

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

dTDP

dCTP

dUDP

dUTP

orotate

UTP

CTP

dTTP

dUMP

dTMP

dCMP

dCDP

UDP

CDP

uracil

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-β-L-arabinopyranose

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

dTDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

thymine

CMP

UMP

isoguanine

preQ₁

baicalein

6,7-dehydrobaicalein

luteolin

scopoletin

coumarin

4-methylumbelliferone

preQ₀

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

urate

4-tyrosol

3-methoxy-4-hydroxyphenylglycol

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-hydroxy-2-(6-oxo-1-oxaspiro[2.5]octa-4,7-dien-2-yl)-1-benzofuran-3-one

6-hydroxy-2-[hydroxy-(4-hydroxyphenyl)methyl]-1-benzofuran-3-one

2-[hydroperoxy(4-hydroxyphenyl)methyl]-6-hydroxy-1-benzofuran-3-one

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

coumarinate

4-aminobenzoate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

(R)-lactate

acetate

formate

pyruvate

butanoate

decanoate

octanoate

3-oxoadipate

(15Z)-tetracosenoate

oleate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

palmitate

pristanate

D-gluconate

D-mannonate

(R)-pantoate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

β-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

L-serine

β-alanine

L-alanine

L-proline

glycine

L-glutamine

L-leucine

D-glutamate

L-glutamate

L-lysine

L-histidine

L-arginine

L-tyrosine

L-asparagine

L-threonine

L-cysteine

L-tryptophan

L-phenylalanine

D-alanine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

3-phospho-L-serine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-citrulline

L-valine

L-isoleucine

L-ornithine

L-canaline

S-sulfo-L-cysteine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

L-homoserine

O-phospho-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

methylglyoxal

diacetyl

glycolaldehyde

butan-1-al

formaldehyde

1-propanal

isobutanal

acetaldehyde

(R)-lactaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

methanol

ethanol

propan-1-ol

phytol

glycerol

galactitol

(3R)-linalool

(3S)-linalool

ethylene glycol

(R)-propane-1,2-diol

(S)-propane-1,2-diol

myo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

1-oleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

di-trans,octa-cis-undecaprenol

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-Kdo-(2→6)-lipid IV_A

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

phlorisovalerophenone

deoxyhumulone

4-prenylphlorisovalerophenone

deoxycohumulone

betanidin

betanidin quinone

vanillylamine

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

maltotriose

raffinose

maltotetraose

stachyose

maltoheptaose

maltopentaose

maltohexaose

α-maltose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

sucrose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl--D-galactosamine 6-sulfate

allolactose

melibiose

α-lactose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-mannosamine

N-acetyl-β-D-galactosamine

N-acetyl-β-D-glucosamine

β-L-fucopyranose

α-L-fucopyranose

keto-D-fructose

β-D-fructofuranose

L-fuculose

D-xylulose

3'-ketolactose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

ADP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

aldehydo-L-galactonate

L-gulonate

L-idonate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

5-fluorocytosine

2-hydroxy-dATP

5-hydroxy-CTP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

UDP-2-acetamido-4-amino-2,4,6-trideoxy-α-D-galactose

2-acetamido-4-amino-2,4,6-trideoxy-α-D-galactosyl-diphospho-ditrans,octacis-undecaprenol

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose