an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

L-arginino-succinate

4-amino-2-methyl-5-pyrimidinemethanol

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-amino-3-carboxymuconate-6-semialdehyde

carbon monoxide

prenyl diphosphate

H₂

nicotinate adenine dinucleotide

3-methyl-2-oxobutanoate

2-dehydropantoate

(R)-5-phosphomevalonate

(R)-mevalonate

isochorismate

hydrogen peroxide

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(R)-4'-phosphopantothenoyl-L-cysteine

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

oxalosuccinate

porphobilinogen

preuroporphyrinogen

coproporphyrinogen III

4-pyridoxolactone

N⁵-carboxyaminoimidazole ribonucleotide

N-succinyl-L,L-2,6-diaminopimelate

glycerone phosphate

thiamine diphosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

isopentenyl diphosphate

α-D-glucosamine 1-phosphate

3-dehydroquinate

(S)-3-methyl-2-oxopentanoate

(S)-2-amino-6-oxohexanoate

4-methyl-2-oxopentanoate

1,4-dihydroxy-2-naphthoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

2-(α-hydroxyethyl)thiamine diphosphate

arsenite

(S)-2,3,4,5-tetrahydrodipicolinate

3-phosphooxypyruvate

N-succinyl-2-amino-6-ketopimelate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

homogentisate

(2-hydroxyphenyl)acetate

4-fumaryl-acetoacetate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

4-imidazolone-5-propanoate

urocanate

orotidine 5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

phosphoenolpyruvate

hydrogen selenide

O-acetyl-L-serine

3-deoxy-D-arabino-heptulosonate 7-phosphate

acetyl phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

(L-threonylcarbamoyl)adenylate

3-deoxy-D-manno-octulosonate 8-phosphate

4-aminobutanoate

β-nicotinate D-ribonucleotide

quinolinate

(R)-mevalonate diphosphate

4'-phosphopantetheine

lipid IV_A

(S)-4-amino-5-oxopentanoate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-aminolevulinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

3-deoxy-α-D-manno-2-octulosonate

urea

2-iminoacetate

CO₂

carbamoyl phosphate

acetoacetate

oxaloacetate

citrate

formamide

lipid X

lipid A disaccharide (E. coli)

dihydrolipoamide

lipoamide

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

dihydroxyacetone

(S)-dihydroorotate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

shikimate

3-dehydroshikimate

H₂O

DNA without lesion

ammonia

4-oxoglutaramate

1-piperideine 6-carboxylate

aminoacetone

xanthine

L-cysteinylglycine

D-alanyl-D-alanine

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

DNA with lesion

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)alamin

adenosylcobalamin

protoheme

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

1-oleoyl-2-lyso-glycerone phosphate

superoxide

5,10-methenyltetrahydrofolate mono-L-glutamate

preQ₀

coenzyme A

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

FMN

FAD

(S)-NADHX

(R)-NADHX

demethylmenaquinol-8

ubiquinol-8

menaquinol-8

3-demethylubiquinol-8

NAD⁺

NADP⁺

NADH

NADPH

nicotinamide

nicotinate

thiamine

riboflavin

pyridoxine

pyridoxamine

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

Fe²⁺

ammonium

H⁺

selenide

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

ethanol

methanol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

dehydrospermidine

spermidine

putrescine

L-homocysteine

4-methylphenol

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

cis-aconitate

D-threo-isocitrate

chorismate

fumarate

succinate

L-aspartate

(S)-malate

(R)-lactate

formate

pyruvate

acetate

butanoate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

4-aminobenzoate

(R)-pantoate

orotate

(S)-1-pyrroline-5-carboxylate

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

D-glutamate

L-glutamate

L-arginine

L-lysine

L-histidine

glycine

L-leucine

L-alanine

L-glutamine

L-tyrosine

L-asparagine

L-threonine

L-cysteine

D-alanine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

3-phospho-L-serine

L-isoleucine

L-valine

L-selenocysteine

L-methionine

L-ornithine

L,L-diaminopimelate

L-cystathionine

L-isoglutamine

L-citrulline

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

hypoglycin A

S-sulfo-L-cysteine

meso-diaminopimelate

glycolaldehyde

formaldehyde

acetaldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

CMP-3-deoxy-β-D-manno-octulosonate

dTDP-β-L-rhamnose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

GDP-α-D-mannose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactofuranose

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

α-D-ribose-1-phosphate

N-acetyl-α-D-mannosamine

2-methylacetoacetyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(2S)-methylsuccinyl-CoA

3'-dephospho-CoA

acetyl-CoA

succinyl-CoA

crotonyl-CoA

oleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

adenosine

xanthosine

inosine

hypoxanthine

dAMP

dGMP

dIMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

XTP

ITP

GTP

ATP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

uracil

dCMP

dTDP

CTP

dUTP

dCTP

UTP

dUMP

dTMP

dTTP

dUDP

UDP

dCDP

CDP

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

CMP

UMP

preQ₁

5'-deoxyadenosine

adenylo-succinate

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

hypoglycin B