an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

phosphoenolpyruvate

CO₂

oxaloacetate

H₂O

oxalosuccinate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

L-histidinol phosphate

imidazole acetol-phosphate

N-(5-phosphoribosyl)-anthranilate

citrate

hydrogenobyrinate a,c-diamide

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

succinate semialdehyde

(R)-4'-phosphopantothenate

(R)-pantothenate

urocanate

4-imidazolone-5-propanoate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

hydrogen peroxide

orotidine 5'-phosphate

glycerone phosphate

acetyl phosphate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

O-acetyl-L-serine

hydrogen selenide

α-D-glucosamine 1-phosphate

4-amino-4-deoxychorismate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

coproporphyrinogen III

3-deoxy-D-arabino-heptulosonate 7-phosphate

histidinol

histidinal

D-erythro-imidazole-glycerol-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

5-enolpyruvoyl-shikimate 3-phosphate

carbamoyl phosphate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

lipid IV_A

lipid A disaccharide (E. coli)

L-canavanine

N-acetylglutamyl-phosphate

DNA without lesion

(2R,3S)-3-methylmalate

citraconate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

3-phosphooxypyruvate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

prenyl diphosphate

isopentenyl diphosphate

(1R,2S)-cyclohexa-3,5-diene-1,2-diol

chloroacetaldehyde

ethanolamine

2-hydroxy-5-carboxymethylmuconate semialdehyde

(4S)-4-hydroxy-2-oxoheptanedioate

prephenate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

β-nicotinate D-ribonucleotide

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

3-oxopropanoate

N-succinyl-L,L-2,6-diaminopimelate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

acetoacetate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

H₂

hypotaurine

lipid X

hydrogenobyrinate

autoinducer 2

S-ribosyl-L-homocysteine

(S)-dihydroorotate

shikimate 3-phosphate

3-dehydroquinate

3-dehydroshikimate

shikimate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

anthranilate

ammonia

urea

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

2-iminobutanoate

2-iminopropanoate

L-α-amino-ε-keto-pimelate

L-alanine

L-isoleucine

L-leucine

L-valine

glycine

L-selenocysteine

L-tryptophan

L-methionine

L-cysteine

L-glutamate

L-aspartate

L-glutamine

L-threonine

L-serine

L-lysine

L-cystathionine

L-asparagine

L-histidine

L-arginine

L-ornithine

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-tyrosine

N-carbamoyl-L-aspartate

L-citrulline

L-homocysteine

O-phospho-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

S-sulfo-L-cysteine

L-aspartate 4-semialdehyde

L-homoserine

L-canaline

O-succinyl-L-homoserine

meso-diaminopimelate

O-acetyl-L-homoserine

N-acetyl-L-glutamate

3-phospho-L-serine

(S)-3-amino-2-methylpropanoate

GDP

GTP

IDP

ITP

adenylo-succinate

IMP

ADP

dADP

dGDP

AMP

GMP

XMP

ATP

5'-deoxyadenosine

dATP

dGTP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

dITP

dIDP

ppGpp

pppGpp

2'-deoxyguanosine

2'-deoxyadenosine

dGMP

dAMP

ADP-α-D-glucose

GDP-α-D-mannose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

adenine

uracil

cyclic di-3',5'-guanylate

dTMP

dUMP

dCMP

dCDP

dUDP

dTDP

dUTP

dCTP

dTTP

CDP

UDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

UTP

CTP

UMP

CMP

NADP⁺

NAD⁺

NADPH

NADH

adenosine

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

β-D-fructofuranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

glycerol

maltotriose

sucrose

maltohexaose

maltoheptaose

maltopentaose

maltotetraose

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

3,4-dihydroxyphenylacetate

catechol

ethanol

methylglyoxal

acetaldehyde

1-propanal

caldariellaquinone

pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

4-aminobenzoate

acetate

orotate

pristanate

octanoate

decanoate

palmitate

stearate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

oleate

linoleate

(15Z)-tetracosenoate

phytenate

formate

propanoate

(R)-lactate

(S)-lactate

cis-aconitate

D-threo-isocitrate

chorismate

fumarate

succinate

(S)-malate

benzene

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

7,8-dihydroneopterin 3'-triphosphate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

FAD

FMN

FADH₂

FMNH₂

precorrin-5

precorrin-4

precorrin-3A

precorrin-3B

precorrin-6A

precorrin-2

precorrin-1

precorrin-6B

precorrin-8x

precorrin-7

nicotinate

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

coenzyme A

(R)-NADHX

(S)-NADHX

glycine betaine

succinyl-CoA

acetyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

malonyl-CoA

(+)-7-epi-jasmonoyl-CoA

methylacrylyl-CoA

isobutanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

acetoacetyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

octanoyl-CoA

decanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

phytenoyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

(+)-7-epi-jasmonate

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

2-chloroacetate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

betaine aldehyde

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

superoxide

hydrogencarbonate

thiosulfate

nitrate

nitrite

sulfite

hydrogensulfite

phosphate

diphosphate

H⁺

ammonium

Co²⁺

Fe²⁺

2-sulfinoacetaldehyde

methanethiol

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

(R)-citramalate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

trans,octacis-decaprenylphospho-β-D-erythro-pentofuranosid-2-ulose

trans,octacis-decaprenylphospho-β-D-ribofuranose

hydrogen sulfide

oxygen

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

protoheme

cob(II)yrinate a,c-diamide

DNA with lesion