an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

porphobilinogen

5-aminolevulinate

CO₂

shikimate 3-phosphate

shikimate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

2-dehydropantoate

3-methyl-2-oxobutanoate

lipid IV_A

(R)-4'-phosphopantothenate

(R)-pantothenate

orotidine 5'-phosphate

N-acetylglutamyl-phosphate

3-deoxy-α-D-manno-2-octulosonate

3-deoxy-D-manno-octulosonate 8-phosphate

glycerone phosphate

(S)-4-amino-5-oxopentanoate

3-dehydroshikimate

N-acetyl-L-glutamate 5-semialdehyde

5-amino-6-(D-ribitylamino)uracil

(S)-dihydroorotate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

prenyl diphosphate

hydrogen peroxide

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

phosphoenolpyruvate

3-demethylubiquinol-6

3-phosphooxypyruvate

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

prephenate

L-histidinol phosphate

imidazole acetol-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

carbamoyl phosphate

coproporphyrinogen III

(lipoyl)adenylate

lipid A disaccharide (E. coli)

lipid X

5-phospho-β-D-ribosylamine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

nicotinate adenine dinucleotide

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-L,L-2,6-diaminopimelate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-(5-phosphoribosyl)-anthranilate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

preuroporphyrinogen

prephytoene diphosphate

α-D-glucosamine 1-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

4'-phosphopantetheine

(S)-3-methyl-2-oxopentanoate

oxaloacetate

carbonic acid

glycolate

2-phosphoglycolate

anthranilate

histidinol

histidinal

D-erythro-imidazole-glycerol-phosphate

DNA without lesion

methylsalicylate

salicyl alcohol

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

(R)-4'-phosphopantothenoyl-L-cysteine

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-guanidinobutyramide

4-amino-4-deoxychorismate

5-amino-6-(5-phospho-D-ribitylamino)uracil

L-arginino-succinate

quinolinate

2-amino-3-carboxymuconate-6-semialdehyde

acetyl phosphate

(4-hydroxyphenyl)acetate

ammonia

enol-phenylpyruvate

2-iminoacetate

(2E,6E)-farnesyl diphosphate

2-iminobutanoate

2-iminosuccinate

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-α-amino-ε-keto-pimelate

glycine

L-alanine

L-tryptophan

L-valine

L-phenylalanine

L-isoleucine

L-leucine

L-methionine

L-cysteine

L-lysine

L-aspartate

L,L-diaminopimelate

L-threonine

L-glutamate

L-tyrosine

L-serine

L-glutamine

L-histidine

L-ornithine

L-aspartyl-4-phosphate

L-arginine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-citrulline

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-homoserine

L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

3-phospho-L-serine

N-acetyl-L-glutamate

N-acetyl-L-methionine

D-glutamate

D-alanine

β-alanine

GDP

GTP

ADP

ATP

AMP

dADP

dGDP

ppGpp

pppGpp

dATP

dGTP

ITP

IDP

dITP

dIDP

adenylo-succinate

IMP

5'-deoxyadenosine

XMP

GMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

2'-deoxyguanosine

2'-deoxyadenosine

dGMP

dAMP

CDP-4-dehydro-6-deoxy-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-4-dehydro-3,6-dideoxy-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

preQ₁

NAD⁺

NADP⁺

NADH

NADPH

dCMP

dTMP

dUMP

dCDP

dUDP

dTDP

dCTP

dTTP

dUTP

CDP

UDP

β-nicotinamide D-ribonucleotide

CTP

UTP

CMP

UMP

adenosine

xanthosine

inosine

guanosine

uridine

cytidine

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

glycolaldehyde

D-glyceraldehyde

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

all-trans-retinol

all-trans-retinyl palmitate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

15-cis-phytoene

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

dioleoyl phosphatidate

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

methanol

diacetyl

4-methylphenol

pyruvate

2-oxobutanoate

2-oxoglutarate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

salicylate

4-aminobenzoate

acetate

orotate

(R)-pantoate

palmitate

stearate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

di-homo-γ-linolenate

formate

(S)-lactate

(R)-lactate

chorismate

succinate

fumarate

(S)-malate

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-7

3-demethylubiquinol-10

demethylmenaquinol-8

menaquinol-8

ubiquinol-9

ubiquinol-8

ubiquinol-6

ubiquinol-7

ubiquinol-10

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

preQ₀

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

riboflavin

FMN

FAD

6,7-dimethyl-8-(1-D-ribityl)lumazine

nicotinate

nicotinamide

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxine

pyridoxal

pyridoxamine

coenzyme A

(R)-lipoate

(R)-NADHX

(S)-NADHX

malonyl-CoA

acetyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

succinyl-CoA

3'-dephospho-CoA

(+)-7-epi-jasmonoyl-CoA

dihomo γ-linolenoyl-CoA

oleoyl-CoA

hexadecanedioyl-CoA

stearoyl-CoA

palmitoyl-CoA

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

(+)-7-epi-jasmonate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

agmatine

spermidine

N⁸-acetylspermidine

(2Z)-2-aminobut-2-enoate

trimethyl sulfonium

sulfate

thiosulfate

hydrogencarbonate

superoxide

phosphate

diphosphate

triphosphate

Fe²⁺

ammonium

H⁺

dimethyl sulfide

glutathione

(R)-S-lactoylglutathione

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

5,10-methenyltetrahydrofolate mono-L-glutamate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoheme

DNA with lesion