an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

1,4-dihydroxy-2-naphthoate

β-D-fructose 2,6-bisphosphate

S-formylmycothiol

S-(hydroxymethyl)mycothiol

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

propionamide

acrylate

acrylamide

H₂

hydroxylamine

ammonia

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

4-aminobutanoate

1,6-anhydro-N-acetyl-β-muramate

2-amino-3-carboxymuconate-6-semialdehyde

acetoacetate

4-fumaryl-acetoacetate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

4-prenylphlorisobutyrophenone

prephytoene diphosphate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

S-methyl-5'-thioadenosine

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

S-adenosyl 3-(methylsulfanyl)propylamine

(L-threonylcarbamoyl)adenylate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

acetyl phosphate

quinolinate

3,4-dihydroxyphenylacetaldehyde

propynoate

prop-2-ynal

dimethylsulfoniopropanoate

4-acetamidobutanoate

4-acetamidobutanal

4-imidazoleacetate

imidazole acetaldehyde

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

D-glucurono-6,3-lactone

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

3'-phosphoadenylyl-sulfate

indole-3-glycol aldehyde

5-enolpyruvoyl-shikimate 3-phosphate

indole-3-glycol

shikimate 3-phosphate

phosphoenolpyruvate

2-methylbutanal

2-methylbutanol

isobutanol

H₂O

5-hydroxytryptophol

3-methylbutanal

3-methylbutanol

CO₂

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

scytalone

2-phenylethanol

hydrogen peroxide

enol-phenylpyruvate

urocanate

4-imidazolone-5-propanoate

ethanolamine

oxaloacetate

oxalosuccinate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

L-arginino-succinate

L-canavanine

canavaninosuccinate

O-ureido-L-homoserine

N-acetyl-L-glutamate 5-semialdehyde

α-D-glucosamine 1-phosphate

N-acetylglutamyl-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4'-phosphopantetheine

thiamine phosphate

succinate semialdehyde

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

isopentenyl diphosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

2-succinylbenzoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

2-oxovalerate

5-aminolevulinate

3-ethylmalate

(S)-4-amino-5-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

3-phosphooxypyruvate

coproporphyrinogen III

(S)-2-acetolactate

porphobilinogen

(S)-2-aceto-2-hydroxybutanoate

preuroporphyrinogen

(R)-2,3-dihydroxy-3-methylpentanoate

4-hydroxy-2-nonenal

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

4-phosphooxy-L-threonine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

2-dehydropantoate

lipoamide

dihydrolipoamide

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

(2S)-2-isopropylmalate

3-methyl-2-oxobutanoate

prephenate

L-histidinol phosphate

imidazole acetol-phosphate

hydroxypyruvate

2-aminomalonate semialdehyde

dethiobiotin

ectoine

(2S)-4-acetamido-2-aminobutanoate

N-(5-phosphoribosyl)-anthranilate

dihydroxyacetone

anthranilate

D-gluconate 6-phosphate

citrate

2-oleoylglycerol

(S)-4-hydroxy-2-oxohexanoate

6-phospho D-glucono-1,5-lactone

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

glycerone phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

DNA without lesion

5-amino-6-(D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

orotidine 5'-phosphate

carbamoyl phosphate

(S)-dihydroorotate

3-dehydroshikimate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

chlorite

shikimate

1-phosphatidyl-myo-inositol 2-mannose

1-phosphatidyl-myo-inositol

glutathione disulfide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

xanthine

6-amino-2-oxohexanoate

urea

S-formylglutathione

2-iminoacetate

D-erythro-imidazole-glycerol-phosphate

carbon monoxide

histidinol

histidinal

ethylamine

N-ethylglycine

methylamine

α-ribazole 5'-phosphate

β-nicotinate D-ribonucleotide

5,6-dimethylbenzimidazole

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

S-acetyldihydrolipoamide

β-D-ribosylnicotinate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

formamide

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

chlorate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

2,3-didehydroadipyl-CoA

4-amino-2-methyl-5-pyrimidinemethanol

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

α, α'-trehalose 6,6'-bismycolate

3-oxo-3-phenylpropanoyl-CoA

7,8-diaminopelargonate

8-amino-7-oxononanoate

pimeloyl-CoA

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

3-amino-1-hydroxyacetone 1-phosphate

O-acetyl-L-serine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

hydrogen selenide

4-amino-4-deoxychorismate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

carbonic acid

2-amino-2-deoxy-D-gluconate 6-phosphate

glutathioselenol

selenodiglutathione

N-acetyl-D-muramate 6-phosphate

(R)-pantothenate

pimelate

salicyl alcohol

methylsalicylate

1-deoxy-L-glycero-tetrulose 4-phosphate

L-selenocystathionine

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

autoinducer 2

S-ribosyl-L-homocysteine

mercuriphenyl acetate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

1-(methylsulfanyl)xylulose 5-phosphate

α-D-galacturonate 1-phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

benzoylsuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

5-aminopentanoate

pyruvic oxime

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

L-dehydro-ascorbate

1-piperideine-2-carboxylate

4-oxoglutaramate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

cyclic-2,3-O-oxalyl-L-threonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

dehydroascorbate (bicyclic form)

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

superoxide

monodehydroascorbate radical

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

1-oleoyl-2-lyso-glycerone phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

oxygen

hydrogen sulfide

Hg⁰

protoporphyrin IX

protoporphyrinogen IX

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

siroheme

protoheme

hydrogen cyanide

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-sirohydrochlorin

cobalt-precorrin-3

cobalt-factor III

cob(II)yrinate c-monoamide

ethylphosphate

phenylacetate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

L-α-amino-ε-keto-pimelate

L-glutamine

L-alanine

glycine

L-proline

L-serine

L-leucine

L-arginine

L-histidine

L-lysine

L-glutamate

D-glutamate

β-alanine

(S)-3-amino-2-methylpropanoate

L-citrulline

L-isoleucine

L-valine

L-methionine

L-tryptophan

L-tyrosine

L-aspartate

L-threonine

L-asparagine

L-cysteine

L-homocysteine

S-adenosyl-L-homocysteine

L-homoserine

L-ornithine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

S-sulfo-L-cysteine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-cystathionine

L-2,4-diaminobutanoate

L-isoglutamine

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

L-selenomethionine

seleno-L-homocysteine

O-acetyl-L-homoserine

sarcosine

N-acetyl-L-glutamate

N-acetyl-L-methionine

3-phospho-L-serine

D-aspartate

D-alanine

D-lysine

AMP

ADP

ATP

GTP

GMP

XMP

IMP

GDP

cyclic-AMP

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

pppGpp

ppGpp

dGDP

dGTP

dADP

dATP

1-(5-phospho-β-D-ribosyl)-AMP

ITP

IDP

dITP

dIDP

adenylo-succinate

hypoxanthine

2'-deoxyguanosine

2'-deoxyadenosine

dGMP

dAMP

NADPH

NADH

NADP⁺

NAD⁺

preQ₁

guanine

adenine

uracil

dTDP

dCDP

dUDP

dTTP

dUTP

dCTP

dTMP

dCMP

dUMP

β-nicotinamide D-ribonucleotide

UMP

CMP

CDP

UDP

CTP

UTP

UDP-α-D-glucose

ADP-α-D-glucose

dTDP-α-D-glucose

GDP-α-D-glucose

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-sulfoquinovopyranose

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

cyclic ADP-ribose

ADP-D-ribose

GDP-α-D-mannose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

adenosine

xanthosine

guanosine

inosine

cytidine

uridine

orotate

(S)-1-pyrroline-5-carboxylate

7,8-dihydrolumazine

7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

FMNH₂

reduced riboflavin

FADH₂

riboflavin

FAD

FMN

precorrin-2

precorrin-1

sirohydrochlorin

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

4-tyrosol

1,3,6,8-naphthalenetetrol

urate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

benzene

flaviolin

3-demethylubiquinol-8

menaquinol-8

menaquinol-7

ubiquinol-8

demethylmenaquinol-8

demethylmenaquinol-7

4-methylphenol

protocatechuate

salicylate

benzoate

4-aminobenzoate

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

benzaldehyde

vanillyl mandelate

3-methoxy-4-hydroxyphenylglycol

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

2-trans-6-trans-tridecadienoyl-CoA

6-trans-tridecenoyl-CoA

(5Z)-tetradecenoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

4-cis-undecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

6-cis-tridecenoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

4-trans-undecenoyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

α, α'-trehalose 6-α-mycolate

trehalose-cis-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

phytyl diphosphate

all-trans-retinyl palmitate

all-trans-retinol

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

15-cis-phytoene

all-trans phytofluene

all-trans-phytoene

(3S)-linalool

(3R)-linalool

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1,2-dibutyrin

tributyrin

phlorisovalerophenone

deoxycohumulone

deoxyhumulone

4-prenylphlorisovalerophenone

L-galactono-1,4-lactone

D-glucono-1,5-lactone

CoA-disulfide

phenylacetyl-CoA

succinyl-CoA

acetyl-CoA

3'-dephospho-CoA

linoleoyl-CoA

α-linolenoyl-CoA

malonyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

choloyl-CoA

chenodeoxycholoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

2-methylacetoacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

methylacrylyl-CoA

4-hydroxybenzoyl-CoA

(E)-2-methylcrotonoyl-CoA

3-hydroxyisovaleryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

benzoyl-CoA

2-methylbutanoyl-CoA

dihomo γ-linolenoyl-CoA

isobutanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

oleoyl-CoA

octanoyl-CoA

decanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

cerotoyl-CoA

pristanoyl-CoA

palmitoyl-CoA

stearoyl-CoA

propanoyl-CoA

butanoyl-CoA

(Z)-15-tetracosenoyl-CoA

2-carboxy-cerotoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

crotonyl-CoA

D-gluconate

L-gulonate

aldehydo-L-galactonate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

sucrose

α,α-trehalose

maltohexaose

maltopentaose

maltoheptaose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

β-D-glucopyranose

α-D-glucopyranose

α-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

β-D-fructofuranose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

glycerol

aldehydo-D-galacturonate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

sucrose 6^F-phosphate

sucrose 6^G-phosphate

α,α-trehalose 6-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

a coenzyme-A group

(2E,6E)-farnesal

(S)-lactaldehyde

1-octanal

1-propanal

isobutanal

acetaldehyde

formaldehyde

butan-1-al

phytenal

methylglyoxal

diacetyl

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

acetate

(R)-pantoate

aldehydo-D-glucuronate

pristanate

dinor-12-oxo-phytodienoate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

linoleate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

palmitate

oleate

(3E,5Z)-tetradecadienoate

stearate

di-homo-γ-linolenate

phytenate

(15Z)-tetracosenoate

octanoate

decanoate

(2E,6E)-farnesoate

butanoate

2-oxoglutarate

pyruvate

glyoxylate

2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

propanoate

formate

(R)-lactate

(S)-lactate

chorismate

succinate

fumarate

(S)-malate

D-glucarate

nicotinamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

acetamide

thiamine

nicotinate

L-ascorbate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxal

pyridoxal 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

(+)-7-epi-jasmonate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

(S)-NADHX

(R)-NADHX

glycine betaine

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

cholate

chenodeoxycholate

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

coenzyme A

myo-inositol

phytate

D-myo-inositol (1,2,3,4,5)-pentakisphosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 5-monophosphate

propan-1-ol

phytol

ethanol

butan-1-ol

methanol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

sn-glycero-3-phosphocholine

(indole-3-yl)acetonitrile

acrylonitrile

preQ₀

choline

spermidine

putrescine

cadaverine

2-aminoprop-2-enoate

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

3-(methylsulfanyl)propanal

methionol

S-(hydroxymethyl)glutathione

mycothiol

thiocyanate

methanethiol

glutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

(R)-S-lactoylglutathione

2-iminosuccinate

2-iminobutanoate

Cu²⁺

Hg²⁺

Cd²⁺

Fe²⁺

Co²⁺

H⁺

ammonium

trimethyl sulfonium

selenide

selenate

sulfite

thiosulfate

hydrogencarbonate

sulfate

perchlorate

selenite

hydrogensulfite

chloride

phosphonate

phosphate

diphosphate

triphosphate

hippurate

(S)-3-hydroxy-isobutanoate

5,10-methenyltetrahydrofolate mono-L-glutamate