an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

isopentenyl diphosphate

H₂O

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

phosphoenolpyruvate

DNA without lesion

(lipoyl)adenylate

lipid A disaccharide (E. coli)

lipid X

5-amino-6-(D-ribitylamino)uracil

lipid IV_A

3-deoxy-D-arabino-heptulosonate 7-phosphate

oxaloacetate

CO₂

3-dehydroshikimate

shikimate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

glycerone phosphate

N-(5-phosphoribosyl)-anthranilate

preuroporphyrinogen

porphobilinogen

hydrogen peroxide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

4-pyridoxolactone

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

6-phospho D-glucono-1,5-lactone

3-deoxy-α-D-manno-2-octulosonate

methylsalicylate

salicyl alcohol

adenosine 3',5'-bisphosphate

2-C-methyl-D-erythritol 4-phosphate

D-gluconate 6-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

coproporphyrinogen III

itaconate

8-amino-7-oxononanoate

pimeloyl-CoA

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

3-deoxy-D-manno-octulosonate 8-phosphate

α-D-glucosamine 1-phosphate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

5-amino-6-(5-phospho-D-ribitylamino)uracil

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-iminoacetate

anthranilate

(S)-2,3,4,5-tetrahydrodipicolinate

acetyl phosphate

ammonia

superoxide

hydrogencarbonate

phosphate

diphosphate

Fe²⁺

ammonium

H⁺

trimethyl sulfonium

dimethyl sulfide

5,10-methenyltetrahydrofolate mono-L-glutamate

1-oleoyl-2-lyso-glycerone phosphate

α-D-glucosamine 6-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoheme

DNA with lesion

L-homocysteine

4-methylphenol

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-α-amino-ε-keto-pimelate

L-lysine

L-glutamate

D-glutamate

glycine

L-serine

L-alanine

L-leucine

L-glutamine

L-tryptophan

L-methionine

L-aspartate

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-tyrosine

N-formyl-L-methionine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

L-homoserine

meso-diaminopimelate

D-alanine

AMP

ATP

5'-deoxyadenosine

ADP

dITP

dIDP

ITP

IDP

GTP

GDP

dGTP

dGDP

dATP

dADP

XMP

IMP

GMP

adenylo-succinate

2'-deoxyguanosine

2'-deoxyadenosine

dGMP

dAMP

ADP-α-D-glucose

GDP-α-D-mannose

NADP⁺

NAD⁺

NADPH

NADH

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

uracil

dCMP

dUMP

dTMP

dUDP

dCDP

dTDP

dUTP

dCTP

dTTP

UDP

CDP

UTP

CTP

UMP

CMP

2'-deoxyuridine

2'-deoxycytidine

uridine

cytidine

maltotriose

sucrose

maltohexaose

maltoheptaose

maltopentaose

maltotetraose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

α-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-glyceraldehyde 3-phosphate

sucrose 6^F-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

β-D-fructofuranose

glycolaldehyde

β-D-glucopyranose

α-D-glucopyranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

all-trans-retinol

all-trans-retinyl palmitate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

methanol

pyruvate

formate

acetate

(R)-lactate

chorismate

fumarate

succinate

(S)-malate

2-oxoglutarate

glyoxylate

salicylate

4-aminobenzoate

palmitate

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

5,6,7,8-tetrahydrofolate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

riboflavin

FAD

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

pyridoxal

(R)-lipoate

coenzyme A

(R)-NADHX

(S)-NADHX

malonyl-CoA

acetyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

succinyl-CoA

itaconyl-CoA

oleoyl-CoA

hexadecanedioyl-CoA

(indol-3-yl)acetate

methyl (indol-3-yl)acetate