an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

urea

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

gallate

2-(α-hydroxyethyl)thiamine diphosphate

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

ammonia

hypotaurine

oxalosuccinate

N-acetyl-D-muramate 6-phosphate

hydroxypyruvate

4-amino-2-methyl-5-pyrimidinemethanol

isobutanol

γ-L-glutamyl 5-phosphate

dihydrophloroglucinol

phloroglucinol

pyrogallol

1,2,3,5-tetrahydroxybenzene

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

N⁵-carboxyaminoimidazole ribonucleotide

dialurate

2-amino-3-carboxymuconate-6-semialdehyde

histidinal

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

2-dehydropantoate

(R)-pantothenate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

α-D-glucosamine 1-phosphate

2-iminoacetate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

hydrogen selenide

autoinducer 2

1,3-propanediol

3-hydroxypropanal

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-oleoylglycerol

coproporphyrinogen III

DNA without lesion

quinolinate

nigerose

nicotinate adenine dinucleotide

L-histidinol phosphate

histidinol

L-canavanine

L-arginino-succinate

canavaninosuccinate

propane-1,3-diamine

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

ethanolamine

citrate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

5-aminolevulinate

8-amino-7-oxononanoate

N-succinyl-L,L-2,6-diaminopimelate

(S)-2-amino-6-oxohexanoate

porphobilinogen

7,8-diaminopelargonate

preuroporphyrinogen

2-dehydro-3-deoxy-D-gluconate

(S)-4-amino-5-oxopentanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

acetoacetate

dethiobiotin

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

butanoyl phosphate

glycolate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

4-amino-4-deoxychorismate

N-(5-phosphoribosyl)-anthranilate

anthranilate

orotidine 5'-phosphate

(S)-dihydroorotate

xanthine

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

chloroacetaldehyde

α-D-glucopyranosyl-diphosphoundecaprenol

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

phosphocholine

(L-threonylcarbamoyl)adenylate

5-(methylsulfanyl)-α-D-ribose

O-acetyl-L-serine

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

S-ribosyl-L-homocysteine

3-methyl-2-oxobutanoate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(R)-2,3-dihydroxy-3-methylpentanoate

hydroxylamine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

N-Formyl-L-kynurenine

5,6-dimethylbenzimidazole

α-ribazole

α-ribazole 5'-phosphate

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

(R)-1-amino-2-propanol O-2-phosphate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

prenyl diphosphate

methylamine

hydrogen peroxide

shikimate

3-dehydroshikimate

shikimate 3-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

5-enolpyruvoyl-shikimate 3-phosphate

2-C-methyl-D-erythritol 4-phosphate

3-dehydroquinate

prephenate

isopentenyl diphosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

acetyl phosphate

oxaloacetate

thiamine diphosphate

H₂

carbon monoxide

4'-phosphopantetheine

phosphoenolpyruvate

(R)-4-phosphopantoate

dihydroxyacetone

glycerone phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

1,6-anhydro-N-acetyl-β-muramate

3-phosphooxypyruvate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

arsenite

carbamoyl phosphate

O-ureido-L-homoserine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

CO₂

H₂O

pyrazine-2-carboxylate

homogentisate

(2-hydroxyphenyl)acetate

glutathione disulfide

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

pyruvic oxime

1-piperideine 6-carboxylate

superoxide

monodehydroascorbate radical

hydroxyl radical

DNA with lesion

cobalt-factor III

cobalt-precorrin-4

cobalt-precorrin-5A

chlorophyllide a

protochlorophyllide a

Mg-protoporphyrin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)alamin

adenosylcobalamin

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

magnesium-protoporphyrin IX 13-monomethyl ester

cobalt-sirohydrochlorin

cobalt-precorrin-6B

cobalt-precorrin-2

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosylcobyrate

protoheme

N-acetyl-β-neuraminate

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

uroporphyrinogen-I

siroheme

(Z,Z)-biliverdin-IX α

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

N-acetyl-β-neuraminate 9-phosphate

1-oleoyl-2-lyso-glycerone phosphate

CMP-N-acetyl-β-neuraminate

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-2-hydroxyglutarate

dimethyl sulfide

S-(hydroxymethyl)glutathione

methanethiol

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-sulfinoacetaldehyde

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

Fe³⁺

Cd²⁺

Ca²⁺

Mg²⁺

Fe²⁺

Co²⁺

ammonium

Na⁺

H⁺

trimethyl sulfonium

thiosulfate

sulfite

nitrite

hydrogencarbonate

OH^-

hydrogensulfite

phosphate

triphosphate

diphosphate

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

malonyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

3'-dephospho-CoA

acetyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

crotonyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

L-galactono-1,4-lactone

D-glucono-1,5-lactone

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

(2E,6E)-farnesyl diphosphate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

L-ascorbate

thiamine

riboflavin

nicotinamide

nicotinate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

precorrin-1

precorrin-2

precorrin-3B

precorrin-4

precorrin-5

precorrin-8x

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

adenosine

xanthosine

inosine

guanosine

hypoxanthine

dAMP

dGMP

dATP

dITP

dGTP

dADP

dGDP

dIDP

IDP

GDP

ADP

XMP

IMP

GMP

AMP

ITP

GTP

ATP

CDP-choline

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

dTTP

CDP

dCDP

dUDP

orotate

UDP

dCTP

dUTP

dUMP

UTP

CTP

dCMP

dTMP

dTDP

uracil

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-quinovosamine

UDP-N-acetyl-α-D-fucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-mannosamine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

UMP

CMP

isoguanine

preQ₁

(S)-1-pyrroline-5-carboxylate

preQ₀

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-methylphenol

4-aminobenzoate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

cis-aconitate

D-threo-isocitrate

(S)-lactate

(R)-lactate

propanoate

formate

acetate

pyruvate

butanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxobutanoate

2-oxoglutarate

5-chloro-4-hydroxy-2-oxopentanoate

glyoxylate

D-gluconate

(R)-pantoate

5-chloro-5-deoxy-D-ribonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

L-α-amino-ε-keto-pimelate

L-serine

β-alanine

L-leucine

L-proline

glycine

L-glutamine

L-alanine

D-glutamate

L-glutamate

L-arginine

L-histidine

L-lysine

L-asparagine

L-tyrosine

L-cysteine

L-threonine

L-phenylalanine

L-tryptophan

D-aspartate

D-proline

D-ornithine

D-alanine

D-lysine

L-aspartyl-4-phosphate

sarcosine

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

L-threonine 3-O-phosphate

3-phospho-L-serine

L-citrulline

L-valine

L-isoleucine

L-glutamate-5-semialdehyde

S-sulfo-L-cysteine

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

L-homoserine

O-phospho-L-homoserine

L-ornithine

L-canaline

meso-diaminopimelate

L-selenocysteine

L-methionine

L-cystathionine

L-2,4-diaminobutanoate

L,L-diaminopimelate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

N¹-acetylspermidine

N-acetylputrescine

N¹-acetylspermine

spermidine

putrescine

spermine

choline

methylglyoxal

diacetyl

(S)-acetoin

(R)-acetoin

1-propanal

butan-1-al

acetaldehyde

isobutanal

formaldehyde

(S)-lactaldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

butan-1-ol

ethanol

glycerol

(S,S)-2,3-butanediol

(R,R)-2,3-butanediol

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-oleoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

dioleoyl phosphatidate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

α-maltose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

GDP-α-D-glucose

ADP-α-D-glucose

GDP-α-D-perosamine

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

6-deoxy-5-ketofructose 1-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

aldehydo-L-galactonate

L-gulonate

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

cyclic-AMP

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

pppGpp

ppGpp

adenylo-succinate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

8-oxo-GTP

8-oxo-dGTP

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

5'-deoxy-5'-fluoroadenosine

2-hydroxy-dATP

5-hydroxy-CTP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

pyrazinamide