an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

N-(2,3-dihydroxybenzoyl)-L-serine trimer

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

prephytoene diphosphate

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

2-oxopent-4-enoate

(S)-4-hydroxy-2-oxopentanoate

formamide

5-dehydro-4-deoxy-D-glucarate

L-selenocystathionine

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

α-ribazole

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

4-amino-4-deoxychorismate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

(S)-2-amino-6-oxohexanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

ethanolamine

carbamoyl phosphate

L-canavanine

L-histidinol phosphate

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

S-ribosyl-L-homocysteine

3-oxopropanoate

glutathione disulfide

2-phosphoglycolate

N,N-Dimethylformamide

dimethylamine

glutathionylspermidine

arsenite

31-O-desmethylFK-506

FK-506

itaconate

3-methyl-2-butenal

N-succinyl-L,L-2,6-diaminopimelate

DNA without lesion

(2S)-2-isopropylmalate

2-isopropylmaleate

adenosine 3',5'-bisphosphate

2-oleoylglycerol

creatinine

4-hydroxy-2-nonenal

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

hydrogenobyrinate

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

preuroporphyrinogen

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-(5-phosphoribosyl)-anthranilate

nicotinate adenine dinucleotide

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(S)-dihydroorotate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-phosphooxypyruvate

4-(γ-L-glutamylamino)butanoate

4-aminobutanoate

γ-glutamyl-L-putrescine

cis-stilbene oxide

(1R,2R)-1,2-diphenylethane-1,2-diol

3-demethylubiquinol-6

O-acetyl-L-serine

acetyl phosphate

xanthine

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(2-hydroxyphenyl)acetate

homogentisate

oxalosuccinate

S-formylglutathione

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

prenyl diphosphate

6-phospho D-glucono-1,5-lactone

2-dehydro-3-deoxy-D-gluconate 6-phosphate

β-D-ribosylnicotinate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

3-deoxy-D-glycero-2,5-hexodiulosonate

porphobilinogen

5-aminolevulinate

5-amino-6-(D-ribitylamino)uracil

N-acetyl-L-glutamate 5-semialdehyde

2-keto-D-gluconate

2-dehydro-3-deoxy-D-gluconate

4-pyridoxolactone

D-gluconate 6-phosphate

α-D-galactosyl-diphosphoundecaprenol

3-deoxy-D-manno-octulosonate 8-phosphate

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

3-dehydroquinate

3-dehydroshikimate

lipid X

2-C-methyl-D-erythritol 4-phosphate

isopentenyl diphosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

2-dehydropantoate

2-cis,4-trans-xanthoxin

N²-succinyl-L-ornithine

N²-succinyl-L-arginine

4'-phosphopantetheine

7,8-diaminopelargonate

dethiobiotin

3-amino-1-hydroxyacetone 1-phosphate

orotidine 5'-phosphate

5-carboxymethyl-2-hydroxymuconate

3-keto-β-D-galactose

(R)-pantothenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

α-D-glucosamine 1-phosphate

hydroxypyruvate

L-tartrate

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

histidinal

histidinol

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

5-oxo-L-proline

glycerone phosphate

2-aminoacetaldehyde

urocanate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

β-nicotinate D-ribonucleotide

quinolinate

prephenate

3-deoxy-α-D-manno-2-octulosonate

anthranilate

shikimate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

methylsalicylate

salicyl alcohol

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

L-β-lysine

hydrogenobyrinate a,c-diamide

cis-coumarinic acid-β-D-glucoside

scopolin

4-hydroxybenzaldehyde

4-methylumbelliferyl glucoside

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

γ-L-glutamyl 5-phosphate

lipid A disaccharide (E. coli)

lipid IV_A

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

N-acetylglutamyl-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

pimeloyl-CoA

8-amino-7-oxononanoate

thiamine phosphate

N-carbamoylputrescine

acetoacetate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

hydrogen peroxide

oxalate

4-maleyl-acetoacetate

4-fumaryl-acetoacetate

carbonic acid

dimethylsulfoniopropanoate

4-acetamidobutanal

4-acetamidobutanoate

D-glucurono-6,3-lactone

prop-2-ynal

propynoate

3,4-dihydroxyphenylacetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

imidazole acetaldehyde

4-imidazoleacetate

phosphoenolpyruvate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

oxaloacetate

citrate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

glycolate

coproporphyrinogen III

CO₂

2-maleylacetate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

H₂O

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

4-oxoglutaramate

1-piperideine 6-carboxylate

L-dehydro-ascorbate

α-D-galacturonate 1-phosphate

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

2-dehydro-6-phospho-D-gluconate

selenodiglutathione

glutathioselenol

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

4-(γ-L-glutamylamino)butanal

2-amino-3-carboxymuconate-6-semialdehyde

4-imidazolone-5-propanoate

urea

dialurate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

hydrogen selenide

autoinducer 2

2-iminoacetate

theophylline

1,3-dimethylurate

3-methylxanthine

3-methylurate

1-methylxanthine

1-methylurate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

butanoyl phosphate

4-amino-2-methyl-5-pyrimidinemethanol

carbon monoxide

(S)-4-amino-5-oxopentanoate

(R)-1-amino-2-propanol O-2-phosphate

N-acetyl-D-muramate 6-phosphate

(L-threonylcarbamoyl)adenylate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

benzoylsuccinyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

succinate semialdehyde

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

phenylacetate

ethylphosphate

phosphonoacetaldehyde

adenosylcobyrate

adenosylcobalamin 5'-phosphate

cobalt-precorrin-3

cobalt-precorrin-4

Mg-protoporphyrin

cob(II)yrinate c-monoamide

cobyrinate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

cob(II)yrinate a,c-diamide

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

protoheme

nitrous oxide

hydrogen cyanide

N₂

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

siroheme

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

N-acetyl-β-neuraminate 9-phosphate

(S)-methylmalonate-semialdehyde

(R)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

2-iminosuccinate

2-iminobutanoate

2-iminopropanoate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

nitric oxide

monodehydroascorbate radical

superoxide

hydroxyl radical

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

S-methyl-L-methionine

S-(hydroxymethyl)glutathione

3-dimethylsulfoniopropionaldehyde

dimethyl sulfide

3-sulfino-L-alanine

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

taurine

3-(N-morpholino)propanesulfonate

isethionate

1-butanesulfonate

(R)-S-lactoylglutathione

Fe³⁺

ammonium

K⁺

H⁺

Mg²⁺

Co²⁺

Fe²⁺

trimethyl sulfonium

thiosulfate

selenide

arsenate

selenate

nitrite

sulfite

hydrogencarbonate

sulfate

hydrogensulfite

OH^-

selenite

molybdate

phosphate

triphosphate

diphosphate

chloride

hippurate

L-homocysteine

4-methylphenol

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

dehydrospermidine

spermidine

putrescine

choline

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

sn-glycero-3-phosphocholine

3-chlorobenzaldehyde

3-chlorobenzoate

acetamide

(S)-(+)-allantoin

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

itaconyl-CoA

dihomo γ-linolenoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

chenodeoxycholoyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

3-hydroxyisovaleryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

methylacrylyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

succinyl-CoA

formyl-CoA

oxalyl-CoA

3'-dephospho-CoA

acetyl-CoA

(S)-3-aminobutanoyl-CoA

phenylacetyl-CoA

isovaleryl-CoA

2-methylbutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

isobutanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

(S)-malyl-CoA

(3Z)-dodec-3-enoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

3-oxooctadecanoyl-CoA

3-oxo-palmitoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

all-trans-retinyl palmitate

D-galactono-1,4-lactone

trans-dienelactone

cis-dienelactone

L-galactono-1,4-lactone

D-glucono-1,5-lactone

FMNH₂

FMN

FAD

FADH₂

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

ubiquinol-10

ubiquinol-7

ubiquinol-6

ubiquinol-8

ubiquinol-9

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-10

3-demethylubiquinol-7

3-demethylubiquinol-8

3-demethylubiquinol-9

caldariellaquinone

coenzyme A

molybdopterin

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

riboflavin

nicotinate

L-ascorbate

thiamine

pyridoxamine

pyridoxine

pyridoxal

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

4-pyridoxate

menadione

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

precorrin-7

precorrin-8x

precorrin-6B

precorrin-6A

precorrin-5

precorrin-4

precorrin-3B

precorrin-3A

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

guanosine

inosine

xanthosine

adenosine

hypoxanthine

dAMP

dIMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

XTP

ITP

GTP

ATP

dCMP

dUMP

dTMP

UTP

dUTP

dTDP

dTTP

dCTP

orotate

uracil

dUDP

UDP

dCDP

CDP

CTP

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galacturonate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-quinovosamine

UDP-N-acetyl-α-D-fucosamine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

UMP

CMP

isoguanine

preQ₁

scopoletin

coumarin

4-methylumbelliferone

preQ₀

neolinustatin

lotaustralin

linustatin

linamarin

taxiphyllin

acrylonitrile

(indole-3-yl)acetonitrile

2-hydroxy-2-methylpropanenitrile

(2R)-2-hydroxy-2-methylbutanenitrile

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

urate

4-hydroxybenzoate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

salicylaldehyde

3-hexaprenyl-4-hydroxybenzoate

vanillyl mandelate

benzaldehyde

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

protocatechuate

3,4-dihydroxyphenylacetate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

coumarinate

salicylate

4-aminobenzoate

benzoate

chorismate

fumarate

L-aspartate

succinate

(S)-malate

D-galactarate

D-glucarate

(2R,3S)-2-methylisocitrate

3-carboxy-cis,cis-muconate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

cis-aconitate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

propanoate

pyruvate

formate

acetate

butanoate

octanoate

(2E,6E)-farnesoate

3-oxoadipate

oleate

(3E,5Z)-tetradecadienoate

γ-linolenate

linoleate

di-homo-γ-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

apo-4'-lycopenoate

phytenate

palmitate

stearate

D-gluconate

(R)-pantoate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

glyoxylate

L-α-amino-ε-keto-pimelate

L-serine

creatine

β-alanine

(S)-3-amino-2-methylpropanoate

L-leucine

L-proline

L-alanine

glycine

L-glutamine

L-glutamate

D-glutamate

N^ω-hydroxy-L-arginine

L-arginine

L-lysine

L-histidine

L-asparagine

L-threonine

L-tyrosine

L-cysteine

L-tryptophan

L-phenylalanine

D-aspartate

D-alanine

seleno-L-homocysteine

S-sulfanyl-L-cysteine

L-aspartyl-4-phosphate

3-phospho-L-serine

sarcosine

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-valine

L-isoleucine

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

hypoglycin A

1-aminocyclopropane-1-carboxylate

L-ornithine

L-homoserine

L-cystine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-succinyl-L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

a coenzyme-A group

methylglyoxal

diacetyl

3-(N-morpholino)propanal

glycolaldehyde

(2E,6E)-farnesal

formaldehyde

butan-1-al

acetaldehyde

1-octanal

1-propanal

(S)-lactaldehyde

phytenal

D-glyceraldehyde

L-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

α-D-galactopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

ethanol

methanol

butan-1-ol

phytol

glycerol

D-mannitol

galactitol

(2E,6E)-farnesol

myo-inositol

phytate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

torulene

apo-4'-lycopenal

9-cis-violaxanthin

(3S,5R,6R)-3,5-dihydroxy-6,7-didehydro-5,6-dihydro-12'-apo-β-caroten-12'-al

9'-cis-neoxanthin

15-cis-phytoene

all-trans-phytoene

all-trans-3,4-didehydrolycopene

4'-apo-β-carotenal

(3S,5R,6S)-5,6-epoxy-3-hydroxy-5,6-dihydro-12'-apo-β-caroten-12'-al

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

α-Kdo-(2→6)-lipid IV_A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

ferric-[N-(2,3-dihydroxybenzoyl)-L-serine trimer] complex

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

XLLG xyloglucan oligosaccharide

XLXG xyloglucan oligosaccharide

XXLG xyloglucan oligosaccharide

XXXG xyloglucan oligosaccharide

maltotriose

raffinose

maltotetraose

stachyose

maltoheptaose

maltohexaose

maltopentaose

α-maltose

melibiose

sucrose

α,α-trehalose

α-lactose

β-D-cellobiose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

keto-D-fructose

β-D-fructofuranose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

3'-ketolactose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

α,α-trehalose 6-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

D-altronate

L-gulonate

aldehydo-L-galactonate

D-galactonate

cyclic-AMP

cyclic-GMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

pppGpp

ppGpp

5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

2-hydroxy-dATP

5-hydroxy-CTP

reduced β-nicotinamide D-ribonucleotide

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

hypoglycin B