an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

glutathione disulfide

L-dehydro-ascorbate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

α-D-galacturonate 1-phosphate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

8-amino-7-oxononanoate

(S)-2-amino-6-oxohexanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

7-epicholate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

5,6-dimethylbenzimidazole

dialurate

(R)-1-amino-2-propanol O-2-phosphate

adenosine 5'-phosphosulfate

2-amino-3-carboxymuconate-6-semialdehyde

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

(S)-2-acetolactate

4-amino-2-methyl-5-pyrimidinemethanol

hydroxypyruvate

3,5-dihydro-4H-imidazol-4-one

4-aminoimidazole

5-aminoimidazole-4-carboxylate

5-ureidoimidazole-4-carboxylate

acetoacetate

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

3-ureidopropanoate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

3-hydroxy-5- oxohexanoyl-CoA

3-hydroxy-5-oxohexanoate

dihydrophloroglucinol

phloroglucinol

pyrogallol

1,2,3,5-tetrahydroxybenzene

gallate

2-(α-hydroxyethyl)thiamine diphosphate

urea

D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

(S)-2-aceto-2-hydroxybutanoate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

1,6-anhydro-N-acetyl-β-muramate

chloroacetaldehyde

nigerose

thiamine diphosphate

oxalosuccinate

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(indol-3-yl)acetamide

propionamide

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

N5-(L-1-carboxyethyl)-L-ornithine

salicyl alcohol

methylsalicylate

propanoyl phosphate

2-iminoacetate

crotonate

cyclohex-1,5-diene-1-carbonyl-CoA

carbon monoxide

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol

indole-3-glycol aldehyde

isobutanol

3-methylbutanol

3-methylbutanal

2-methylbutanol

2-methylbutanal

2-phenylethanol

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

trans-O-hydroxybenzylidenepyruvate

2-oleoylglycerol

creatinine

ammonia

prephenate

5-aminopentanoate

4-amino-4-deoxychorismate

DNA without lesion

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

(L-threonylcarbamoyl)adenylate

coenzyme F₃₉₀-A

ethanolamine

(indol-3-yl)pyruvate

glycolate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinylglutamate

4-acetamidobutanal

4-acetamidobutanoate

3-phosphooxypyruvate

N-acetyl-D-muramate 6-phosphate

quinolinate

L-β-lysine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

diethylthiophosphate

dimethylthiophosphate

diethylphosphate

chloramphenicol

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-aminobutanoate

shikimate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

α-ribazole 5'-phosphate

α-ribazole

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

heteropyrithiamine

dihydrolipoate

arsenite

hydrogen selenide

O-acetyl-L-serine

(lipoyl)adenylate

H₂

coproporphyrinogen III

selenophosphate

7,8-diaminopelargonate

5-methylcytosine

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

3-dehydroshikimate

dethiobiotin

O-ureido-L-homoserine

canavaninosuccinate

L-canavanine

L-arginino-succinate

α-D-glucosamine 1-phosphate

butanoyl phosphate

5-amino-6-(D-ribitylamino)uracil

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-phospho-β-D-ribosylamine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

S-methyl-5'-thioadenosine

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

S-adenosyl 3-(methylsulfanyl)propylamine

prenyl diphosphate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

dihydroxyacetone

5-aminolevulinate

porphobilinogen

preuroporphyrinogen

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

autoinducer 2

glycerone phosphate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-C-methyl-D-erythritol 4-phosphate

hydrogen peroxide

S-ribosyl-L-homocysteine

phosphoenolpyruvate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

citrate

(R)-pantothenate

3-methyl-2-oxobutanoate

2-dehydropantoate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

carbamoyl phosphate

CO₂

(S)-dihydroorotate

orotidine 5'-phosphate

oxaloacetate

acetyl phosphate

xanthine

H₂O

nicotinate adenine dinucleotide

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

5-hydroxyindole thiazolidine carboxylate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

1-piperideine 6-carboxylate

(2E,6E)-farnesyl diphosphate

2-iminopropanoate

2-iminobutanoate

2-iminosuccinate

cyanophycin primer-L-aspartate

cyanophycin primer

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

N-acetyl-L-glutaminyl-L-glutamine

N-acetyl-L-glutaminyl-L-glutamine amide

D-alanyl-D-alanine

DNA with lesion

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-4

cobalt-precorrin-5A

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

3,8-divinyl protochlorophyllide a

magnesium-protoporphyrin IX 13-monomethyl ester

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

chlorophyllide a

protochlorophyllide a

Mg-protoporphyrin

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosylcobyrate

adenosylcobalamin 5'-phosphate

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosylcobinamide

cobalt-precorrin-2

cobalt-precorrin-3

cobalt-sirohydrochlorin

cobalt-factor III

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

protoheme

hydrogen cyanide

N₂

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-chloroacetate

sn-glycerol 3-phosphate

(R)-glycerate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

1-oleoyl-2-lyso-glycerone phosphate

5,10-methenyltetrahydrofolate mono-L-glutamate

(R)-2-hydroxyglutarate

superoxide

nitric oxide

monodehydroascorbate radical

parathion

paraoxon

4-nitrophenol

chloramphenicol 3-acetate

dimethyl sulfide

methionol

3-(methylsulfanyl)propanal

S-(hydroxymethyl)glutathione

thiocyanate

glutathione

methanethiol

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

(R)-S-lactoylglutathione

ammonium

H⁺

Co²⁺

Fe²⁺

Cd²⁺

Mg²⁺

selenide

nitrate

nitrite

selenite

selenate

sulfite

thiosulfate

hydrogencarbonate

hydrogensulfite

sulfate

phosphonate

phosphate

triphosphate

diphosphate

chloride

trimethyl sulfonium

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

N¹-acetylspermidine

N-acetylputrescine

N¹-acetylspermine

spermine

putrescine

spermidine

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

acetamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

nicotinamide

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

3-dehydrocholate

isocholate

glycocholate

cholate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

2-methylbutanoyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

(S)-3-aminobutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

benzoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

succinyl-CoA

malonyl-CoA

isobutanoyl-CoA

3'-dephospho-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

crotonyl-CoA

(S)-malyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

butanoyl-CoA

propanoyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

all-trans-retinyl palmitate

L-galactono-1,4-lactone

D-glucono-1,5-lactone

FAD

FADH₂

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

(R)-lipoate

coenzyme A

oxidized coenzyme F₄₂₀-2

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

L-ascorbate

nicotinate

thiamine

riboflavin

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

all-trans-retinol

(S)-1-pyrroline-5-carboxylate

pyridine

precorrin-1

precorrin-3B

precorrin-4

precorrin-5

precorrin-7

precorrin-8x

precorrin-2

precorrin-6B

precorrin-6A

sirohydrochlorin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

guanine

adenine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

guanosine

xanthosine

adenosine

inosine

purine

hypoxanthine

dIMP

dITP

dGTP

dATP

dGDP

dADP

GDP

ADP

GMP

IMP

XMP

AMP

XTP

GTP

ATP

dTTP

dTDP

cytosine

dUDP

5,6-dihydrothymine

5,6-dihydrouracil

dCMP

dCDP

CDP

dUTP

dCTP

UTP

UDP

dUMP

dTMP

CTP

uracil

orotate

UDP-α-D-galacturonate

UDP-α-D-galactose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

CDP-α-D-glucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

5-fluorouracil

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

thymine

CMP

UMP

preQ₁

2-hydroxychromene-2-carboxylate

preQ₀

salicylaldehyde

6,8-dihydroxypurine

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-tyrosol

urate

3-methoxy-4-hydroxyphenylglycol

amino-parathion

methyl parathion

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

4-aminophenol

4-methylphenol

2,3-dihydroxybenzoate

protocatechuate

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

salicylate

benzoate

4-aminobenzoate

chorismate

(4S)-4-hydroxy-2-oxoglutarate

fumarate

succinate

L-aspartate

(S)-malate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

(S)-lactate

(R)-lactate

propanoate

pyruvate

acetate

formate

butanoate

octanoate

3-oxoadipate

apo-4'-lycopenoate

phytenate

palmitate

D-gluconate

(R)-pantoate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

3-phenyl-2-oxopropanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxobutanoate

2-oxoglutarate

L-threo-3-phenylserine

L-serine

creatine

β-alanine

L-alanine

glycine

L-leucine

L-proline

L-glutamine

D-glutamate

L-glutamate

L-lysine

L-histidine

L-arginine

L-threonine

L-asparagine

L-tyrosine

L-cysteine

L-tryptophan

L-phenylalanine

D-aspartate

D-ornithine

D-proline

D-alanine

D-lysine

S-sulfanyl-L-cysteine

L-aspartyl-4-phosphate

sarcosine

N-formimino-glycine

N-carbamoyl-L-aspartate

O-acetyl-L-homoserine

3-phospho-L-serine

L-citrulline

L-isoleucine

L-valine

L-glutamate-5-semialdehyde

L-canaline

L-cystine

O-succinyl-L-homoserine

S-sulfo-L-cysteine

L-ornithine

L-homocysteine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-selenocysteine

L-allo-threonine

L-methionine

L-cystathionine

L,L-diaminopimelate

methylglyoxal

diacetyl

glycolaldehyde

1-propanal

isobutanal

1-octanal

butan-1-al

formaldehyde

acetaldehyde

(S)-lactaldehyde

phytenal

α-D-glucopyranose

β-D-glucopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

ethanol

propan-1-ol

methanol

butan-1-ol

phytol

glycerol

D-sorbitol

L-iditol

D-sorbitol 6-phosphate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

apo-4'-lycopenal

pyochelin

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

sucrose

keto-D-fructose

keto-L-sorbose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (mycobacteria)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

GDP-α-D-glucose

GDP-α-D-mannuronate

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

erythrulose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-gulonate

aldehydo-L-galactonate

pppGpp

ppGpp

cyclic-AMP

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

two adjacent thymidines in DNA

5-fluorocytosine

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate