an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

trichloroethene

tetrachloroethene

cis-1,2-dichloroethene

N⁵-carboxyaminoimidazole ribonucleotide

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

S-ribosyl-L-homocysteine

autoinducer 2

α-D-glucosamine 1-phosphate

pseudouridine

mesaconate

2-oxoadipate

acetyl phosphate

α-ribazole

dialurate

2-amino-3-carboxymuconate-6-semialdehyde

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-C-methyl-D-erythritol 4-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

thiamine diphosphate

1,4-dihydroxy-2-naphthoate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

oxalosuccinate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

shikimate

3-dehydroshikimate

3-dehydroquinate

pseudouridine 5'-phosphate

S-methyl-5'-thioadenosine

5-deoxy-α-ribose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

3-phosphooxypyruvate

L-β-lysine

(R)-1-amino-2-propanol O-2-phosphate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

4-aminobutanoate

2-dehydropantoate

(R)-pantothenate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

imidazole acetol-phosphate

L-histidinol phosphate

histidinal

histidinol

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

hydrogen peroxide

nicotinate adenine dinucleotide

D-erythro-imidazole-glycerol-phosphate

hydrogen selenide

1-deoxy-L-glycero-tetrulose 4-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(D-ribitylamino)uracil

orotidine 5'-phosphate

carbon monoxide

DNA without lesion

4-fumaryl-acetoacetate

acetoacetate

L-arginino-succinate

canavaninosuccinate

L-canavanine

4-pyridoxolactone

γ-L-glutamyl 5-phosphate

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(S)-dihydroorotate

carbamoyl phosphate

O-ureido-L-homoserine

5-phospho-β-D-ribosylamine

β-nicotinate D-ribonucleotide

4-amino-4-deoxychorismate

anthranilate

N-(5-phosphoribosyl)-anthranilate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

chloroethene

(R)-1-aminopropan-2-ol

prephenate

enol-phenylpyruvate

H₂

O-acetyl-L-serine

glycerone phosphate

quinolinate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

oxaloacetate

citrate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

coproporphyrinogen III

CO₂

H₂O

dimethyl sulfide

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

superoxide

thiosulfate

hydrogencarbonate

phosphate

triphosphate

diphosphate

chloride

H⁺

ammonium

Fe²⁺

Co²⁺

Mg²⁺

trimethyl sulfonium

(2Z)-2-aminobut-2-enoate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

nicotinamide

ethene

(S)-3-aminobutanoyl-CoA

malonyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

3'-dephospho-CoA

acetyl-CoA

crotonyl-CoA

oleoyl-CoA

butanoyl-CoA

propanoyl-CoA

acetoacetyl-CoA

FAD

FMNH₂

FMN

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

nicotinate

pyridoxal

menadione

(S)-1-pyrroline-5-carboxylate

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

adenosine

hypoxanthine

dAMP

dGMP

dATP

dITP

dGTP

dADP

dGDP

dIDP

IDP

GDP

ADP

XMP

GMP

IMP

AMP

ITP

GTP

ATP

dCMP

dTTP

CDP

dCDP

dCTP

dUDP

dUTP

UDP

uracil

dTDP

orotate

UTP

CTP

dUMP

dTMP

UMP

CMP

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

preQ₁

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

precorrin-1

precorrin-2

sirohydrochlorin

cobyrinate

cob(I)alamin

adenosylcobalamin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

preQ₀

4-aminobenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

butanoate

(R)-pantoate

acetate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

pyruvate

2-oxoglutarate

L-2-aminoadipate

L-cysteine

L-tyrosine

glycine

L-threonine

L-glutamine

L-serine

L-lysine

L-histidine

L-arginine

L-glutamate

L-aspartate

L-phenylalanine

L-tryptophan

D-alanine

L-aspartyl-4-phosphate

(2S, 3S)-3-methylaspartate

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-citrulline

S-sulfo-L-cysteine

L-homocysteine

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

L-ornithine

L-canaline

S-adenosyl-L-methionine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-leucine

L-valine

L-alanine

L-proline

L-isoleucine

L,L-diaminopimelate

L-cystathionine

(R)-β-lysine

β-alanine

chorismate

fumarate

succinate

(S)-malate

(1R,2S)-homoisocitrate

cis-homoaconitate

cis-aconitate

(2R)-homocitrate

D-threo-isocitrate

propanoate

formate

methylglyoxal

diacetyl

glycolaldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-al

acetaldehyde

butan-1-ol

ethanol

1-oleoyl-2-lyso-glycerone phosphate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

(2E,6E)-farnesyl diphosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

sucrose

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

GDP-α-D-mannose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-AMP

5'-deoxyadenosine

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

D-alanyl-D-alanine

2-iminobutanoate

2-iminosuccinate

DNA with lesion

cobalt-factor III

cobalt-sirohydrochlorin

adenosylcobalamin 5'-phosphate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

adenosyl-cobinamide phosphate

adenosylcobinamide-GDP

Mg-protoporphyrin

cob(I)inamide

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobinamide

adenosylcobyrate

protoheme

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

oxygen

hydrogen sulfide

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

(S)-citramalate

5,10-methenyltetrahydrofolate mono-L-glutamate