an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

aminoacrylate

2-dehydropantolactone

4-methyl-2-oxopentanoate

3-phenylpropanoate

α-ribazole

lipid A disaccharide (E. coli)

3-dehydro-2-deoxy-D-gluconate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

dihydrolipoamide

enol-phenylpyruvate

7-carboxy-7-deazaguanine

cyclic-2,3-O-oxalyl-L-threonate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(2Z,4E)-2-hydroxy-6-oxonona-2,4-diene-1,9-dioate

3-deoxy-α-D-manno-2-octulosonate

(lipoyl)adenylate

N-succinyl-L,L-2,6-diaminopimelate

4-(2-aminophenyl)-2,4-dioxobutanoate

propanoyl phosphate

S-ribosyl-L-homocysteine

S-carboxymethyl-D-cysteine

2-phosphoglycolate

N-(2,3-dihydroxybenzoyl)-L-serine trimer

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

5-dehydro-4-deoxy-D-glucarate

m⁷GTP

8-amino-7-oxononanoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2-dehydro-3-deoxy-L-rhamnonate

coproporphyrinogen III

dihydroxyacetone

ethyl-2-methylacetoacetate

(S)-4-amino-5-oxopentanoate

prenyl phosphate

preuroporphyrinogen

kynurenate

1,3-propanediol

β-nicotinate D-ribonucleotide

N-acetyl-DL-methionine

(R)-pantolactone

2-aminomalonate semialdehyde

N⁶-(D-psicosyl)-L-lysine

cyanate

N²-succinyl-L-glutamate 5-semialdehyde

3-dehydroshikimate

2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

(enterobacterial common antigen)-undecaprenyl diphosphate

(S)-2,3,4,5-tetrahydrodipicolinate

glycolate

syringaldazine

L-dehydro-ascorbate

3-keto-L-gulonate 6-phosphate

hydroxypyruvate

(R)-1-aminopropan-2-ol

D-phenylhydantoin

L-quinate

selenophosphate

thiamine diphosphate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-oxepin-2(3H)-ylideneacetyl-CoA

2-mercaptoethanol

5-phospho-α-D-ribose 1,2-cyclic phosphate

3-hydroxypropanoate

6-(glutathion-S-yl)-2-methylhydroquinone

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

acetyl phosphate

anthranilate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

carbamoyl phosphate

dethiobiotin

(4S)-4-hydroxy-5-phosphooxypentane-2,3-dione

5,6-dimethylbenzimidazole

5-nitro benzisoxazole

L-histidinol phosphate

N-(5-phosphoribosyl)-anthranilate

oxalate

N²-succinyl-L-arginine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

α-D-ribose 1,5-bisphosphate

thiamine triphosphate

shikimate 3-phosphate

(2R,3S)-3-isopropylmalate

3-hydroxy-5-phosphooxypentane-2,4-dione

3-keto-L-gulonate

4-phosphooxy-L-threonine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

ADP-D-glycero-β-D-manno-heptose

D-tartrate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

7,8-diaminopelargonate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2-iminoacetate

selenodiglutathione

histidinol

N-(2,3-dihydroxybenzoyl)-L-serine dimer

L-rhamnonate

glutathione disulfide

pimeloyl-CoA

S-acetyldihydrolipoamide

succinate semialdehyde

urea

M_LPS

methyl-1,4-benzoquinol

(Z)-3-ureidoacrylate peracid

2-dehydropantoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-phosphooxypyruvate

core oligosaccharide-lipid A (E. coli K-12 core type)

2-deoxygluconate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

γ-glutamyl-L-putrescine

2-carboxy-L-xylonolactone

hydrogen peroxide

2-hydroxyethyldisulfide

D-gluconate 6-phosphate

N-succinyl-2-amino-6-ketopimelate

cysteamine S-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(S)-2-aceto-2-hydroxybutanoate

prephenate

S-adenosyl 3-(methylsulfanyl)propylamine

2-hydroxy-3-oxosuccinate

tartronate semialdehyde

2-deoxy-D-glucose 6-phosphate

α-D-ribose-1-methylphosphonate 5-phosphate

3,4-dihydroxyphenylacetyl-CoA

N⁷-methylguanosine 5'-phosphate

aminoacetone

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-ureidoglycolate

ethanolamine

(Z)-2-methyl-peroxyaminoacrylate

carboxyphosphate

3-oxopropanoate

3-deoxy-D-glycero-2,5-hexodiulosonate

N²-succinyl-L-ornithine

(R)-pantothenate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

pseudouridine

pseudouridine 5'-phosphate

tetrahydrothiophene 1-oxide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(2S)-2-isopropylmalate

4-aminobutanoate

1,6-anhydro-N-acetyl-β-muramate

5-amino-6-(D-ribitylamino)uracil

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

3-dehydroquinate

autoinducer 2

glutathionylspermidine

salicyl alcohol

L-arginino-succinate

2-succinylbenzoate

2-carboxymuconate

5-amino-6-(5-phospho-D-ribosylamino)uracil

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

thiamine phosphate

DNA without lesion

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

5-enolpyruvoyl-shikimate 3-phosphate

5-phospho-β-D-ribosylamine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

N-ethylsuccinimide

D-glycero-β-D-manno-heptose 1-phosphate

2-aminoacetaldehyde

γ-L-glutamyl 5-phosphate

N⁵-carboxyaminoimidazole ribonucleotide

N-(2,3-dihydroxybenzoyl)-L-serine

oxaloacetate

(R)-2,3-dihydroxy-3-methylpentanoate

N-carbamoyl-2-oxoglycine

phosphoenolpyruvate

(R)-4'-phosphopantothenoyl-L-cysteine

shikimate

1,4-dihydroxy-2-naphthoyl-CoA

lipid A-core 1-diphosphate

3-ureidoacrylate

2,3-didehydroadipyl-CoA

2-protocatechuoylphloroglucinolcarboxylate

(R)-4'-phosphopantothenate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

carbon monoxide

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

dehydroascorbate (bicyclic form)

histidinal

oxamate

O-phosphoethanolamine

(2,3-dihydroxybenzoyl)adenylate

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

2-methyl-1,4-benzoquinone

2-dehydro-3-deoxy-D-gluconate

S-(acet-2-yl)-glutathione

2,5-didehydro-D-gluconate

3-mercaptopyruvate

(acetamidomethyl)phosphonate

5-aminolevulinate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

4-(γ-L-glutamylamino)butanal

2-carboxy-L-threo-pentonate

H₂

(L-threonylcarbamoyl)adenylate

lipoamide

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

N-acetyl-L-glutamate 5-semialdehyde

porphobilinogen

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

L-tartrate

xanthine

4-(γ-L-glutamylamino)butanoate

(Z)-3-peroxyaminoacrylate

2-deoxy-D-glucose

methanetelluronate

adenosine 3',5'-bisphosphate

α-D-ribose-1-(methyl)phosphonate-5-triphosphate

5-dehydro-D-gluconate

(3R)-3,4-dihydroxybutanal

α-ribazole 5'-phosphate

lipid X

nicotinate adenine dinucleotide

citrate

glycerone phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

2-keto-L-gulonate

α-D-glucosamine 1-phosphate

(Z)-2-methylureidoacrylate peracid

hydroxylamine

3-deoxy-D-manno-octulosonate 8-phosphate

1,2-dihydro-β-NADP

2,3-dioxo-L-gulonate

N²-succinylglutamate

4'-phosphopantetheine

2-(α-hydroxyethyl)thiamine diphosphate

(2E)-2-hydroxypenta-2,4-dienoate

tetrahydrothiophene

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

2-dehydro-3-deoxy-D-arabinonate

4-amino-4-deoxychorismate

S-methyl-5'-thioadenosine

N-acetyl-D-muramate 6-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

2-dehydro-3-deoxy-D-galactonate 6-phosphate

1,4-dihydroxy-2-naphthoate

ethyl-(2R)-methyl-(3S)-hydroxybutanoate

(3E)-2-oxopent-3-enoate

3-hydroxypropanal

4-pregnen-20,21-diol-3-one

3'-phosphoadenylyl-sulfate

2-C-methyl-D-erythritol 4-phosphate

pyrazine-2-carboxylate

N-carbamoyl-D-phenylglycine

2-isopropylmaleate

(S)-3-methyl-2-oxopentanoate

3-deoxy-D-arabino-heptulosonate 7-phosphate

(S)-4-hydroxy-2-oxopentanoate

2-hydroxycyclohepta-1,4,6-triene-1-carboxylate

hydroxyacetone

N-(4-aminobenzoyl)-L-glutamate

ammonia

6-phospho D-glucono-1,5-lactone

isopentenyl diphosphate

bisorganyltrisulfane

GMP-N-ε-(N-α-acetyl lysine methyl ester) 5'-phosphoramidate

imidazole acetol-phosphate

tetramethoxy azobismethylene quinine

5'-phosphoguanylyl(3'→5')guanosine

(E)-3-(methoxycarbonyl)pent-2-enedioate

orotidine 5'-phosphate

3-amino-1-hydroxyacetone 1-phosphate

2-keto-D-gluconate

glycerol 2-phosphate

quinolinate

(L-seryl)adenylate

(2S)-2-isopropyl-3-oxosuccinate

thioglycolate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

N,N-dimethyl-1,4-phenylenediamine

3-oxo-5,6-didehydrosuberyl-CoA

3-(3-hydroxyphenyl)propanoate

methyl-p-hydroquinone

N¹-(5-phospho-β-D-ribosyl)glycinamide

O-acetyl-L-serine

adenosine 5'-phosphosulfate

D-erythro-imidazole-glycerol-phosphate

CO₂

(S)-dihydroorotate

2-cyano-4-nitrophenol

N-acetylglutamyl-phosphate

oxalosuccinate

11-deoxycorticosterone

prenyl diphosphate

phosphocholine

S-formylglutathione

1-pyrroline

adenosine thiamine triphosphate

2-dehydro-3-deoxy-D-galactonate

3,4,4-trihydroxy-5-phosphooxypentan-2-one

acetoacetate

ADP-L-glycero-β-D-manno-heptose

D-xylonate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

α-D-glucopyranosyl-diphosphoundecaprenol

γ-butyrobetaine

cyclic- 3,4-O-oxalyl-L-threonate

4-amino-2-methyl-5-pyrimidinemethanol

(O-carbamoyl)adenylate

isochorismate

lipid IV_A

N-ethylmaleimide

2-oxopent-4-enoate

3-(2,3-dihydroxyphenyl)propanoate

tellurite

5-(methylsulfanyl)-α-D-ribose

H₂O

α-D-glucosamine 6-phosphate

uroporphyrinogen-I

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

siroheme

protoheme

D-mannonate

D-gluconate

aldehydo-L-galactonate

D-altronate

D-galactonate

L-idonate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

1-deoxy-D-xylulose

6-O-acetyl-α-D-glucopyranosyl-(1→4)-D-glucose

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

L-glyceraldehyde 3-phosphate

methyl β-D-glucoside 6-phosphate

N-monoacetylchitobiose 6'-phosphate

N,N'-diacetylchitobiose 6'-phosphate

α,α-trehalose 6-phosphate

UDP-α-D-galactose

methyl-β-D-galactoside

arbutin-6-phosphate

salicin 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

UDP-α-D-glucose

ADP-α-D-glucose

dTDP-α-D-glucose

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-fucose

ADP-D-ribose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-β-L-threo-pentapyranos-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 1,7-bisphosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

N⁶-(6-phospho-D-fructosyl)-L-lysine

5-phospho-α-D-ribose 1-diphosphate

α-D-galactose 1-phosphate

aldehydo-D-allose 6-phosphate

L-ascorbate 6-phosphate

keto-L-tagatose 6-phosphate

β-D-fructofuranose 6-phosphate

D-tagatofuranose 6-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

6-deoxy-6-sulfo-D-fructose 1-phosphate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

D-ribulose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-allulose 6-phosphate

aldehydo-D-galacturonate

allolactose

α-lactose

α,α-trehalose

maltotetraose

maltoheptaose

maltopentaose

maltohexaose

maltotriose

colanic acid

α-Kdo-(2->4)-α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

glucosyl-(heptosyl)₃-glucosyluronate-Kdo₂-lipid A-phosphate

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A 1-diphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A

glucosyl-(heptosyl)₂-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-phosphate

glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-glucosyl-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₂-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

galactosyl-(glucosyl)₃-(heptosyl)₃-Kdo₂-lipid A-bisphosphate

heptosyl-Kdo₂-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

octyl α-D-glucopyranoside

octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside

1,3,4-butanetriol

glycerol

D-sorbitol 6-phosphate

galactitol 1-phosphate

D-mannitol 1-phosphate

4-deoxy-L-threo-hex-4-enopyranuronate

β-L-rhamnopyranose

α-L-rhamnopyranose

β-L-fucopyranose

α-L-fucopyranose

β-D-fructofuranose

α-D-galactopyranose

β-D-galactopyranose

β-D-galactofuranose

α-D-galactofuranose

β-D-glucopyranose

α-D-glucopyranose

aldehydo-D-mannose

β-D-mannopyranose

β-D-ribopyranose

glycolaldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

D-glyceraldehyde

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-α-neuraminate

N-acetyl-β-neuraminate

keto-D-fructose

6-deoxy-6-sulfo-D-fructose

L-fuculose

keto-L-rhamnulose

5-deoxy-D-ribose

D-xylulose

D-ribulose

L-xylulose

L-ribulose

β-L-lyxopyranose

D-glucono-1,5-lactone

D-galactono-1,4-lactone

(3S)-hydroxyadipyl-CoA

acetyl-CoA

acryloyl-CoA

phenylacetyl-CoA

3-hydroxybenzoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

crotonobetainyl-CoA

3'-dephospho-CoA

formyl-CoA

γ-butyrobetainyl-CoA

L-carnitinyl-CoA

malonyl-CoA

oxalyl-CoA

succinyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

propanoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

(3Z)-dodec-3-enoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dodec-2-enoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

bromoacetate

3-chloro-D-alanine

3-(all-trans-octaprenyl)benzene-1,2-diol

hydrogen sulfide

oxygen

[FeO(OH)] monomer

L-homocysteine

4-methylphenol

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

enterobactin

ferric-[N-(2,3-dihydroxybenzoyl)-L-serine trimer] complex

iron(III) dicitrate

ferric-enterobactin complex

(S)-ureidoglycine

hydrogen cyanide

(S)-2-hydroxyglutarate

(R)-2-hydroxyglutarate

sn-glycerol 3-phosphate

superoxide

hydroxyl radical

monodehydroascorbate radical

nitric oxide

3-(N-morpholino)propanal

benzaldehyde

phenylacetaldehyde

4-nitrobenzaldehyde

methylglyoxal

(R)-lactaldehyde

(S)-lactaldehyde

acetaldehyde

formaldehyde

menadione

diacetyl

methane

ethene

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-alanyl-glycine

glycyl-L-proline

glycyl-L-methionine

glycyl-L-glutamine

glycyl-L-asparagine

L-alanyl-L-threonine

L-alanyl-L-leucine

L-alanyl-L-histidine

L-alanyl-L-glutamine

L-alanyl-L-aspartate

glycyl-L-aspartate

glycyl-L-glutamate

L-alanyl-L-glutamate

L-alanyl-D-glutamate

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-methionyl-L-alanine dipeptide

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

2-octaprenylphenol

carbamate

L-kynurenine

L-α-amino-ε-keto-pimelate

L-citrulline

L-arginine

L-asparagine

L-cysteine

L-glutamine

L-glutamate

L-histidine

L-isoleucine

L-alanine

L-aspartate

L-leucine

L-lysine

L-methionine

L-phenylalanine

L-proline

L-serine

L-threonine

L-tryptophan

L-tyrosine

L-valine

glycine

3-sulfino-L-alanine

S-adenosyl-L-homocysteine

S-adenosyl-S-carboxymethyl-L-homocystein

D-cystine

L-cystine

N⁶-(D-fructosyl)-L-lysine

L-homoserine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

L-ornithine

O-phospho-L-homoserine

O-succinyl-L-homoserine

S-adenosyl-L-methionine

L-allo-threonine

L-selenocysteine

meso-diaminopimelate

L-threo-3-phenylserine

D-methionine

D-alanine

D-cysteine

D-glutamate

D-serine

L-aspartyl-4-phosphate

L-cystathionine

L,L-diaminopimelate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-methyl-L-tryptophan

L-2-amino-3-oxobutanoate

N-α-acetyl lysine methyl ester

4-hydroxy-L-threonine

S-methyl-L-methionine

N-acetyl-L-glutamate

N-acetyl-L-methionine

O-phospho-L-tyrosine

L-threonine 3-O-phosphate

3-phospho-L-serine

β-alanine

(R)-β-lysine

N-acetyl-D-mannosamine 6-phosphate

6-carboxy-5,6,7,8-tetrahydropterin

5,6,7,8-tetrahydromonapterin

FAD

FMN

riboflavin

FADH₂

FMNH₂

reduced riboflavin

prenylated FMNH₂

6,7-dimethyl-8-(1-D-ribityl)lumazine

molybdopterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin

7,8-dihydromonapterin triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

cyclic pyranopterin phosphate

bis(guanylyl molybdopterin) cofactor

bis(molybdenum cofactor)

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

cytidylyl molybdenum cofactor

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

adenine

guanine

XMP

GMP

IMP

AMP

IDP

ADP

XDP

GDP

ITP

ATP

XTP

GTP

2'-deoxyguanosine 3'-monophosphate

2'-deoxyadenosine 3'-monophosphate

dGMP

dIMP

dAMP

dADP

dGDP

dITP

dATP

dGTP

hypoxanthine

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

adenosine

guanosine

inosine

xanthosine

quercetin

(S)-1-pyrroline-5-carboxylate

preQ₁

isoguanine

N¹-ethyladenine

N¹-methyladenine

N3-methylcytosine

thymine

uracil

cytosine

5,6-dihydrouracil

5,6-dihydrothymine

dUDP

CDP

orotate

cytidine 2',3'-cyclic monophosphate

dTMP

uridine 2'3'-cyclic monophosphate

CTP

dCMP

dUTP

cytidine-3'-monophosphate

dTDP

uridine 3'-monophosphate

UDP

dCDP

dUMP

cytidine 2'-monophosphate

uridine 2'-monophosphate

dTTP

UTP

dCTP

CMP

UMP

thymidine 3'-monophosphate

2'-deoxycytidine 3'-monophosphate

2'-deoxyuridine 3'-monophosphate

2'-deoxycytidine

2'-deoxyuridine

thymidine

cytidine

uridine

adenosylcobalamin

cob(I)alamin

sirohydrochlorin

precorrin-1

precorrin-2

phenylacetate

allantoate

nicotinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

pyrazinamide

(S)-(+)-allantoin

(methyl)phosphonate

(aminomethyl)phosphonate

1-chloro-2,4-dinitrobenzene

4-nitrophenyl phosphate

4-nitrobenzyl alcohol

4-nitrophenol

2,4-dinitrophenyl-S-glutathione

(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate

pyruvate

2-oxoglutarate

2-oxobutanoate

4-(methylsulfanyl)-2-oxobutanoate

glyoxylate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2,3-dihydroxybenzoate

3-hydroxybenzoate

4-aminobenzoate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1,2-dicis-vaccenoyl-phosphatidate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

(3E,5Z)-tetradecadienoate

(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(1Z,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate

(2R,3S)-2-methylisocitrate

(R)-glycerate

(S)-lactate

(R)-lactate

(S)-3-hydroxybutanoate

(R)-3-hydroxybutanoate

acetate

L-carnitine

(R)-pantoate

D-tagaturonate

formate

propanoate

cis-aconitate

cis-2-methylaconitate

trans-aconitate

(2S,3S)-2-methylcitrate

D-threo-isocitrate

chorismate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

L-idarate

D-galactarate

D-glucarate

enol-oxaloacetate

fumarate

succinate

(R)-malate

(S)-malate

(4S)-4-hydroxy-2-oxoglutarate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

2-methoxy-6-(all-trans-octaprenyl)phenol

myo-inositol

1D-myo-inositol 1-monophosphate

phytate

D-myo-inositol (1,2,4,5,6)-pentakisphosphate

D-myo-inositol (1,2,3,4,5)-pentakisphosphate

hydroquinone

3,4-dihydroxyphenylacetate

ethylene glycol

(R)-propane-1,2-diol

(S)-propane-1,2-diol

1-dodecanol

ethanol

methanol

L-ascorbate

nicotinate

thiamine

pyridoxal

pyridoxal 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

agmatine

cadaverine

aminopropylcadaverine

putrescine

spermidine

N¹-acetylspermidine

4-aminobutanal

2-phenylethylamine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

glycine betaine

betaine aldehyde hydrate

betaine aldehyde

choline

dTDP-4-amino-4,6-dideoxy-α-D-galactose

methyl red

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

dodecyl sulfate

sulfoquinovose

(2R)-3-sulfolactaldehyde

taurine

isethionate

3-(N-morpholino)propanesulfonate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

cysteamine

methanethiol

thiocyanate

S-sulfanylglutathione

adenosine 2'-monophosphate

adenylo-succinate

guanosine 3'-monophosphate

5'-deoxyadenosine

8-oxo-GMP

8-oxo-GDP

adenosine 2',3'-cyclic monophosphate

1-(5-phospho-β-D-ribosyl)-ATP

cyclic-GMP

8-oxo-dGTP

pppGpp

8-oxo-GTP

ppGpp

8-oxo-dGDP

adenosine 3'-monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

guanosine 2',3'-cyclic monophosphate

cyclic-AMP

8-oxo-dGMP

guanosine 2'-monophosphate

2-oxo-2'-deoxyadenosine

P¹,P³-bis(5'-adenosyl) triphosphate

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

NAD⁺

NADP⁺

NADH

NADPH

(R)-NADPHX

(S)-NADPHX

cyclic di-3',5'-guanylate

5-hydroxy-CTP

2-hydroxy-dATP

2-hydroxy-dAMP

5-hydroxy-CMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

reduced β-nicotinamide D-ribonucleotide

2-iminobutanoate

2-iminosuccinate

adenosylcobalamin 5'-phosphate

adenosylcobinamide

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

cob(I)inamide

4-hydroxybenzoate

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxy-trans-cinnamate

3-hydroxy-trans-cinnamate

menadiol

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

coenzyme A

(R)-lipoate

molybdate

hydrogencarbonate

hydrogensulfite

nitrate

nitrite

OH^-

thiosulfate

selenide

selenate

selenite

sulfite

sulfate

bromide

chloride

phosphate

triphosphate

diphosphate

Cr³⁺

Cr⁶⁺

Fe³⁺

Cu²⁺

Fe²⁺

Mg²⁺

Ni²⁺

Zn²⁺

Ag⁺

ammonium

Cu⁺

K⁺

H⁺

preQ₀

DNA with lesion

DNA with lesion resolved through Rec-mediated pathway

a mismatched DNA base pair

a properly matched DNA base pair

cholate

(S)-NADHX

(R)-NADHX

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

S-methylglutathione

a mature peptidoglycan (meso-diaminopimelate containing)

a mature peptidoglycan strand with GlcNAc terminus

a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus

trans-2,3-dehydroadipyl-coA

keto-D-tagatose 6-phosphate

D-myo-inositol (2,3,4,5) tetrakisphosphate

D-myo-inositol (2,4,5) trisphosphate

D-myo-inositol (2,5) bisphosphate

1D-myo-inositol 2-monophosphate

1-methyl-dAMP

M-antigen (variant) monomer undecaprenyl diphosphate

core oligosaccharide-lipid A (E. coli K-12 core type) (no GlcNAc)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

maltose

2-O-(α-D-glucopyranosyl)-D-glycerate

1-(6-sulfo-α-D-quinovosyl)glycerol

6-sulfo-α-D-quinovose

ferroheme o

melibionate

(7Z)-hexadecenoyl-CoA

3-oxo-(9Z)-octadecenoyl-CoA

(S)-3-hydroxy-(9Z)-octadecenoyl-CoA

(2E,9Z)-octadecenoyl-CoA

(2E,9Z)-hexadecenoyl-CoA

(S)-3-hydroxy-(9Z)-hexadecenoyl-CoA

3-oxo-(11Z)-octadecenoyl-CoA

(S)-3-hydroxy-(11Z)-octadecenoyl-CoA

(2E,11Z)-octadecenoyl-CoA

(5Z)-tetradecenoyl-CoA

3-oxo-(7Z)-hexadecenoyl-CoA

(S)-3-hydroxy-(7Z)-hexadecenoyl-CoA

(2E,7Z)-hexadecenoyl-CoA

(3Z)-dec-3-enoyl-CoA

3-oxo-(5Z)-dodecenoyl-CoA

(S)-3-hydroxy-(5Z)-dodecenoyl-CoA

(2E,5Z)-dodecenoyl-CoA

(5Z)-dodecenoyl-CoA

3-oxo-(7Z)-tetradecenoyl-CoA

(S)-3-hydroxy-(7Z)-tetradecenoyl-CoA

(2E,7Z)-tetradecenoyl-CoA

(7Z)-tetradecenoyl-CoA

3-oxo-(9Z)-hexadecenoyl-CoA

(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate

(2E,6E)-farnesyl phosphate

2,6-dimethoxyphenol

3,3',5,5'-tetramethoxydiphenoquinone

α-D-ribose-1-(2-N-acetamidomethylphosphonate) 5-phosphate

N-methylacetamide

α-D-ribose 1-(acetamidomethylphosphonate) 5-triphosphate

(2-aminoethyl)phosphonate

(2-acetamidoethyl)phosphonate

[(R)-1-aminoethyl]phosphonate

[(1R)-1-acetamidoethyl]phosphonate

[(S)-1-aminoethyl]phosphonate

[(1S)-1-acetamidoethyl]phosphonate

L,L-homocystine

N-acetyl-D-glucosamine-6-phosphate

lanthionine

L-djenkolate

5-oxo-L-proline

Fe³⁺-[N-(2,3-dihydroxybenzoyl)-L-serine] complex

S-sulfo-L-cysteine

biotin

biotinyl-5'-adenylate

4,5-seco-dopa

glyoxal

N⁸-acetylspermidine

N^ω-phosphocreatine

creatine

Nα,Nε-diacetyl-lysyl-D-alanyl-D-alanine

Nα,Nε-diacetyl-lysyl-D-alanine

L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

2''-O-acetyl-ADP-ribose

N-acetyl-muramoyl-(L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine)

N-acetyl-muramoyl-(L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine)

toluquinol

2-oxoglutaramate

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

glycyl-glycine

γ-glutamyl-p-nitroanilide

4-nitroaniline

γ-L-glutamyl-glycylglycine

prenol

pGp

D-homoserine

1-methyl-dATP

L-glyceraldehyde

palmitoleate

cis-vaccenate

oleate

oleoyl-CoA

L-malic semialdehyde

trimethylamine

CDP-glycerol

peptidylproline (ω = 180)

peptidylproline (ω = 0)

a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine I

a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine (fragment 1)

a partially deacetylated poly-β-1,6-N-acetyl-D-glucosamine (fragment 2)

6-decylubiquinol

6-decylubiquinone

cefoperazone

β-D-glucosyl-1-phosphoundecaprenol

ferrichrome

ferric coprogen

(S)-2-acetolactate

3-methyl-2-oxobutanoate

(2R)-2,3-dihydroxy-3-methylbutanoate