an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

carbon monoxide

lipid X

(lipoyl)adenylate

CDP-glycerol

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

4-methylmuconolactone

2-chloro-4-methyl-cis,cis-muconate

1-piperideine 6-carboxylate

4-oxoglutaramate

aminoacetone

pregn-5-ene-3,20-dione

pregn-5-ene-3,20-dione-17-ol

5-hydroxyindole thiazolidine carboxylate

L-dehydro-ascorbate

5-androstene-3,17-dione

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

cyclic-2,3-O-oxalyl-L-threonate

dehydroascorbate (bicyclic form)

N²-succinylglutamate

bisorganyltrisulfane

H₂O

3-deoxy-D-manno-octulosonate 8-phosphate

cyclic- 3,4-O-oxalyl-L-threonate

2,3-dioxo-L-gulonate

2-carboxy-L-xylonolactone

2-maleylacetate

2-carboxy-L-threo-pentonate

(L-threonylcarbamoyl)adenylate

methylsalicylate

salicyl alcohol

orotidine 5'-phosphate

2-keto-L-gulonate

5-amino-6-(5-phospho-D-ribosylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribitylamino)uracil

shikimate

1,4-dihydroxy-2-naphthoate

glutathione disulfide

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

ammonia

4-methylumbelliferyl glucoside

4-hydroxybenzaldehyde

scopolin

2-succinylbenzoate

cis-coumarinic acid-β-D-glucoside

prephytoene diphosphate

anthranilate

N-(5-phosphoribosyl)-anthranilate

β-nicotinate D-ribonucleotide

3-deoxy-α-D-manno-2-octulosonate

α-D-glucosamine 1-phosphate

glycerone phosphate

4-amino-4-deoxychorismate

CO₂

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

thiamine diphosphate

thiamine phosphate

4-hydroxy-2-nonenal

5-amino-6-(D-ribitylamino)uracil

xanthine

hydrogen peroxide

quinolinate

carbonic acid

phosphoenolpyruvate

oxaloacetate

formamide

(R)-mevalonate

urea

nigerose

prephenate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

urocanate

4-aminobutanoate

2-(α-hydroxyethyl)thiamine diphosphate

N-succinyl-L,L-2,6-diaminopimelate

nicotinate adenine dinucleotide

S-acetyldihydrolipoamide

dimethylamine

dihydrolipoamide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(E)-4-coumaroyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

2,3-didehydroadipyl-CoA

acetyl phosphate

D-gluconate 6-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

4-imidazolone-5-propanoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

3-methoxy-4-hydroxyphenylglycolaldehyde

indole-3-glycol aldehyde

indole-3-glycol

H₂

3-methylbutanal

3-phosphooxypyruvate

3-methylbutanol

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-methylbutanal

2-methylbutanol

(S)-2-amino-6-oxohexanoate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

2-phenylethanol

7-epicholate

carbamoyl phosphate

oxalosuccinate

(R)-5-phosphomevalonate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

lipid IV_A

lipid A disaccharide (E. coli)

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

enol-phenylpyruvate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinyl-L-ornithine

2-oxepin-2(3H)-ylideneacetyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

N-acetyl-L-glutamate 5-semialdehyde

L-arginino-succinate

L-canavanine

canavaninosuccinate

N-acetylglutamyl-phosphate

O-ureido-L-homoserine

acetoacetate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

histidinol

L-histidinol phosphate

O-acetyl-L-serine

histidinal

hydrogen selenide

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

pseudouridine 5'-phosphate

succinate semialdehyde

3-dehydroquinate

N⁵-carboxyaminoimidazole ribonucleotide

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

prenyl diphosphate

citrate

2-iminoacetate

4-imidazoleacetate

imidazole acetaldehyde

coproporphyrinogen III

5-hydroxyindole acetate

β-D-ribosylnicotinate

4'-phosphopantetheine

N¹-(5-phospho-β-D-ribosyl)glycinamide

3,4-dihydroxyphenylacetaldehyde

propynoate

prop-2-ynal

(R)-pantothenate

D-glucurono-6,3-lactone

4-acetamidobutanoate

4-acetamidobutanal

5-oxo-L-proline

4-maleyl-acetoacetate

dimethylsulfoniopropanoate

homogentisate

(2-hydroxyphenyl)acetate

4-fumaryl-acetoacetate

isobutanol

pseudouridine

2-amino-3-carboxymuconate-6-semialdehyde

(S)-dihydroorotate

3-deoxy-D-glycero-2,5-hexodiulosonate

2-dehydropantoate

5-dehydro-D-gluconate

cis,cis-muconate

muconolactone

(+)-muconolactone

2-dehydro-3-deoxy-D-gluconate

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

preuroporphyrinogen

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-dehydroshikimate

dihydroxyacetone

DNA without lesion

2-dehydro-3-deoxy-D-gluconate 6-phosphate

FK-506

31-O-desmethylFK-506

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

4-guanidinobutyramide

isopentenyl diphosphate

(R)-mevalonate diphosphate

porphobilinogen

benzoylsuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

α-D-galacturonate 1-phosphate

(indole-3-yl)acetonitrile

hydrogen cyanide

taxiphyllin

linamarin

linustatin

lotaustralin

neolinustatin

preQ₀

(2R)-2-hydroxy-2-methylbutanenitrile

2-hydroxy-2-methylpropanenitrile

salicylaldehyde

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

urate

4-tyrosol

salicylate

benzoate

4-aminobenzoate

coumarinate

4-methylumbelliferone

coumarin

scopoletin

4,6-dichloro-3-methylcatechol

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

2,4-dichlorotoluene

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

3,4-dihydroxymandelate

3,4-dihydroxyphenylacetate

4-methylphenol

indole

(indol-3-yl)acetaldehyde

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

benzaldehyde

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

3-methoxy-4-hydroxyphenylglycol

vanillyl mandelate

demethylmenaquinol-8

demethylmenaquinol-7

demethylmenaquinol-6

menaquinol-7

menaquinol-6

menaquinol-8

glycolaldehyde

fluoroacetaldehyde

(2E,6E)-farnesal

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

D-glyceraldehyde

α-D-galactopyranose

β-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

L-sorbosone

methylglyoxal

(S)-lactaldehyde

phytenal

acetaldehyde

butan-1-al

1-propanal

isobutanal

formaldehyde

1-octanal

isoguanine

8-oxo-dGTP

8-oxo-GTP

5'-chloro-5'-deoxyadenosine

ppGpp

pppGpp

dAMP

dGMP

ADP

ATP

GMP

IMP

AMP

GDP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

GTP

dADP

dATP

dGDP

dGTP

hypoxanthine

ITP

IDP

dITP

dIDP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

adenylo-succinate

XMP

5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-α-D-glucose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactofuranose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-galactosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

CMP-3-deoxy-β-D-manno-octulosonate

2'-deoxyuridine

thymidine

2'-deoxycytidine

adenosine

xanthosine

inosine

guanosine

uridine

cytidine

guanine

adenine

uracil

preQ₁

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

dUMP

dTMP

dCMP

dTDP

dCDP

dUDP

dCTP

dUTP

dTTP

UDP

CDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

UTP

CTP

UMP

CMP

2-hydroxy-dATP

5-hydroxy-CTP

glycerol

D-sorbitol

butan-1-ol

ethanol

propan-1-ol

methanol

phytol

(3S)-linalool

(3R)-linalool

L-homocysteine

formate

pyruvate

acetate

butanoate

(S)-lactate

(R)-lactate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

D-mannonate

orotate

(R)-pantoate

fluoroacetate

D-gluconate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-galacturonate

aldehydo-D-glucuronate

pristanate

octanoate

decanoate

palmitate

α-linolenate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

oleate

linoleate

phytenate

(15Z)-tetracosenoate

apo-4'-lycopenoate

(2E,6E)-farnesoate

4-hydroxybutanoate

cis-aconitate

D-threo-isocitrate

3-methyl-cis,cis-muconate

chorismate

D-glucarate

L-aspartate

succinate

fumarate

(S)-malate

L-α-amino-ε-keto-pimelate

S-sulfanyl-L-cysteine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-glutamate

N⁶,N⁶-dimethyl-L-arginine

D-lysine

D-glutamate

D-alanine

D-ornithine

D-proline

L-tyrosine

L-cysteine

L-glutamine

glycine

L-threonine

L-asparagine

L-serine

L-glutamate

L-histidine

L-lysine

L-arginine

L-proline

L-alanine

L-leucine

β-alanine

L-tryptophan

L-phenylalanine

L-valine

L-isoleucine

L-selenocysteine

L-methionine

L-cystathionine

L-isoglutamine

L-ornithine

L,L-diaminopimelate

L-citrulline

L-cystine

L-homoserine

hypoglycin A

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-glutamate-5-semialdehyde

S-sulfo-L-cysteine

1-aminocyclopropane-1-carboxylate

meso-diaminopimelate

FAD

riboflavin

FMN

FMNH₂

FADH₂

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-phosphate

cyclic pyranopterin phosphate

molybdopterin

molybdopterin adenine dinucleotide

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

N¹⁰-formyldihydrofolate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

MoO₂-molybdopterin cofactor

6,7-dimethyl-8-(1-D-ribityl)lumazine

precorrin-2

precorrin-1

adenosylcobalamin

cob(I)alamin

(R)-lipoate

coenzyme A

L-ascorbate

thiamine

nicotinate

nicotinamide

all-trans-retinol

pyridoxamine

pyridoxal

pyridoxine

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

α-D-mannose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

D-fructose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

sucrose 6^F-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

β-D-fructofuranose

D-xylulose

L-sorbosone 2,6-lactone

L-sorbosone 1,4-lactone

keto-D-fructose

keto-L-sorbose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

β-D-cellobiose

maltotriose

α-Kdo-(2→6)-lipid IV_A

sucrose

α-maltose

α-lactose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

L-idonate

D-altronate

L-gulonate

aldehydo-L-galactonate

all-trans-retinyl palmitate

D-glucono-1,5-lactone

2-chloro-5-methyl-dienelactone

3,5-dichloro-2-methyl-muconolactone

5-chloro-3-methyl-cis-dienelactone

cis-dienelactone

trans-dienelactone

3-chloro-2-methyl-dienelactone

L-galactono-1,4-lactone

(E)-glutaconyl-CoA

2-methylacetoacetyl-CoA

4-hydroxybutanoyl-CoA

2-methylbutanoyl-CoA

isobutanoyl-CoA

isovaleryl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

malonyl-CoA

acetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

succinyl-CoA

methylacrylyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3S)-hydroxyadipyl-CoA

(E)-2-methylcrotonoyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

3'-dephospho-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

(+)-7-epi-jasmonoyl-CoA

4-hydroxybenzoyl-CoA

4-cis-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

2-trans-nonenoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3E)-dec-3-enoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

3-methylglutaconyl-CoA

3-methylcrotonyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

α-linolenoyl-CoA

phenylacetyl-CoA

linoleoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

oleoyl-CoA

palmitoyl-CoA

lauroyl-CoA

hexanoyl-CoA

octanoyl-CoA

decanoyl-CoA

propanoyl-CoA

butanoyl-CoA

pristanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

3-oxoadipyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

(3Z)-dodec-3-enoyl-CoA

phytenoyl-CoA

(2E)-oct-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

androsterone

pregnenolone

testosterone

progesterone

campest-4-en-3-one

methyl (indol-3-yl)acetate

phenylacetate

(indol-3-yl)acetate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

3-chloro-cis,cis-muconate

3,5-dichloro-2-methyl-muconate

3-chloro-2-methyl-maleylacetate

2-chloro-5-methyl-maleylacetate

(S)-2-chloropropanoate

(R)-NADHX

(S)-NADHX

a coenzyme-A group

agmatine

spermidine

putrescine

dehydrospermidine

2-aminoprop-2-enoate

2-iminopropanoate

(2Z)-2-aminobut-2-enoate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

3-oxocholest-4,24-dien-26-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxochol-4,22-dien-24-oyl-CoA

22-hydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxo-4,17-pregnadiene-20-carboxyl-CoA

17-hydroxy-3-oxo-4-pregnane-20-carboxyl-CoA

(25S)-3-oxocholest-4-en-26-oate

(25S)-26-oxocholest-4-en-3-one

(25S)-26-hydroxycholest-4-en-3-one

cholest-4-en-3-one

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

17-α-hydroxypregnenolone

3-β-hydroxyandrost-5-en-17-one

cholest-5-en-3-one

cholesterol

isocholate

3-dehydrocholate

glycocholate

cholate

campest-4-en-3β-ol

androst-4-ene-3,17-dione

androsta-1,4-diene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

5α-androstane-3,17-dione

3-oxo-24-ethyl-cholest-5-ene

sitosterol

3-oxo-24-ethyl-cholest-4-ene

3-oxo-24-ethyl-26-hydroxy-cholest-4-ene

3-oxo-24-ethyl-cholest-4-en-26-oyl-CoA

3-oxo-24-ethyl-cholest-4,24-dien-26-oyl-CoA

3-oxo-24-(isopropanoyl)-cholest-4,24-dien-26-oyl-CoA

3,24-dioxo-cholest-4-en-26-oate

3-oxo-24-ethyl-cholest-4-en-26-oate

3-oxo-24-ethyl-26-al-cholest-4-ene

trans,octacis-decaprenyl phosphate

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

apo-4'-lycopenal

β-zeacarotene

β-carotene

myxol

plectaniaxanthin

15-cis-phytoene

zeaxanthin

β-cryptoxanthin

hydroxy-β-zeacarotene

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

3-dimethylsulfoniopropionaldehyde

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

thiocyanate

S-sulfanylglutathione

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydrogensulfite

OH^-

nitrite

hydrogencarbonate

superoxide

nitrate

thiosulfate

molybdate

sulfite

chloride

phosphate

diphosphate

triphosphate

Fe³⁺

Mg²⁺

Cd²⁺

Fe²⁺

Cu²⁺

H⁺

ammonium

K⁺

trimethyl sulfonium

hydroxyl radical

monodehydroascorbate radical

nitric oxide

5,10-methenyltetrahydrofolate mono-L-glutamate

1-oleoyl-2-lyso-glycerone phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

hydrogen sulfide

protochlorophyllide a

chlorophyllide a

3,8-divinyl protochlorophyllide a

Mg-protoporphyrin

magnesium-protoporphyrin IX 13-monomethyl ester

protoporphyrinogen IX

protoporphyrin IX

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

(Z,Z)-biliverdin-IX α

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

13¹-hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester

13¹-oxo-magnesium-protoporphyrin IX 13-monomethyl ester

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

cyanophycin primer-L-aspartate

cyanophycin primer

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

2-iminosuccinate

2-iminobutanoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

2-cis,6-trans,10-trans-geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-nonaprenyl diphosphate

geranylgeranyl diphosphate

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

N₂

hypoglycin B