an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

hydrogen peroxide

4-imidazolone-5-propanoate

2-dehydro-3-deoxy-D-gluconate

orotidine 5'-phosphate

urea

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-acetyl-L-glutamate 5-semialdehyde

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

selenophosphate

α-D-galactosyl-diphosphoundecaprenol

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

dihydroxyacetone

2-phenylethanol

2-methylbutanol

2-methylbutanal

3-methylbutanol

3-methylbutanal

isobutanol

indole-3-glycol

indole-3-glycol aldehyde

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxytryptophol

5-hydroxyindole acetaldehyde

acetyl phosphate

citrate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

(S)-dihydroorotate

oxalate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

imidazole acetol-phosphate

L-histidinol phosphate

xanthine

carbon monoxide

phosphoenolpyruvate

α-D-glucosamine 1-phosphate

oxaloacetate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

glycerone phosphate

5-amino-6-(D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

(R)-pantothenate

(R)-4'-phosphopantothenate

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

5,6-dimethylbenzimidazole

β-nicotinate D-ribonucleotide

α-ribazole 5'-phosphate

(R)-1-aminopropan-2-ol

(R)-1-amino-2-propanol O-2-phosphate

CO₂

3-deoxy-α-D-manno-2-octulosonate

H₂O

D-erythro-imidazole-glycerol-phosphate

histidinol

histidinal

shikimate

3-dehydroshikimate

3-dehydroquinate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-iminoacetate

formamide

carbamoyl phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

acetoacetate

H₂

α-ribazole

dialurate

ammonia

urea-1-carboxylate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

hydroxylamine

DNA without lesion

cyclohex-1,5-diene-1-carbonyl-CoA

N²-succinylglutamate

β-D-ribosylnicotinate

β-D-fructose 2,6-bisphosphate

5-aminopentanoate

dihydrolipoate

2-O-(6-phospho-α-D-mannosyl)-D-glycerate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(2S)-lactyl-2-diphospho-5'-guanosine

ADP-L-glycero-β-D-manno-heptose

(L-threonylcarbamoyl)adenylate

aminoacetone

canavaninosuccinate

L-canavanine

L-arginino-succinate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(+)-muconolactone

muconolactone

cis,cis-muconate

guanidinoacetate

creatinine

coproporphyrinogen III

hydroxypyruvate

enol-phenylpyruvate

pyruvic oxime

urocanate

3-phosphooxypyruvate

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

phosphocholine

N-dimethylethanolamine phosphate

O-phosphoethanolamine

N-methylethanolamine phosphate

butanoyl phosphate

L-cysteinylglycine

D-alanyl-D-alanine

hippurate

4-methylphenol

L-homocysteine

DNA with lesion

cobalt-precorrin-2

cobalt-sirohydrochlorin

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

adenosylcobinamide

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

cob(II)yrinate c-monoamide

cobalt-factor III

cobalt-precorrin-3

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cobyrinate

adenosylcobalamin 5'-phosphate

cob(II)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cob(I)inamide

cob(I)alamin

adenosylcobalamin

protoheme

hydrogen cyanide

protoporphyrin IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

oxygen

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

5,10-methenyltetrahydrofolate mono-L-glutamate

methionol

3-(methylsulfanyl)propanal

dimethyl sulfide

thiocyanate

glutathione

L-cysteate

3-sulfopyruvate

Fe³⁺

H⁺

ammonium

Co²⁺

Fe²⁺

Cu²⁺

trimethyl sulfonium

hydrogencarbonate

thiosulfate

sulfite

selenide

hydrogensulfite

phosphate

diphosphate

triphosphate

2-iminopropanoate

2-aminoprop-2-enoate

agmatine

putrescine

spermidine

choline

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

sn-glycero-3-phosphocholine

sn-glycero-3-phosphoethanolamine

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

acetyl-CoA

formyl-CoA

oxalyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

3'-dephospho-CoA

benzoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

crotonyl-CoA

(S)-malyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

propanoyl-CoA

butanoyl-CoA

acetoacetyl-CoA

FMNH₂

FMN

FAD

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

coenzyme A

(R)-lipoate

oxidized coenzyme F₄₂₀-0

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

riboflavin

nicotinate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

precorrin-2

precorrin-1

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 2',3'-cyclic phosphate

adenine

guanine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

xanthosine

guanosine

inosine

adenosine

hypoxanthine

dGTP

dATP

dGDP

dADP

GDP

ADP

GMP

XMP

IMP

AMP

GTP

ATP

orotate

dUTP

dCTP

UTP

UDP

CDP

CTP

dTDP

dTTP

dTMP

dCMP

dCDP

uracil

dUMP

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

uridine

cytidine

UMP

CMP

preQ₁

preQ₀

4-tyrosol

urate

3-methoxy-4-hydroxyphenylglycol

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

3,4-dihydroxyphenylglycol

3,4-dihydroxyphenylglycolaldehyde

benzoate

chorismate

L-aspartate

fumarate

succinate

(S)-malate

cis-aconitate

D-threo-isocitrate

(S)-lactate

acetate

pyruvate

formate

butanoate

oleate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

glyoxylate

2-oxoglutarate

L-serine

creatine

L-alanine

L-leucine

glycine

L-glutamine

L-proline

D-glutamate

L-glutamate

L-arginine

L-lysine

L-histidine

L-tyrosine

L-asparagine

L-threonine

L-phenylalanine

D-alanine

D-proline

D-ornithine

D-aspartate

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

L-threonine 3-O-phosphate

3-phospho-L-serine

sarcosine

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-aspartate

N-acetyl-L-ornithine

N-carbamoyl-L-aspartate

L-citrulline

L-isoleucine

L-valine

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

L-ornithine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

hypoglycin A

meso-diaminopimelate

L-methionine

L,L-diaminopimelate

L-isoglutamine

methylglyoxal

isobutanal

1-propanal

acetaldehyde

butan-1-al

formaldehyde

(S)-lactaldehyde

phytenal

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

propan-1-ol

ethanol

butan-1-ol

phytol

glycerol

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

iron(III) dicitrate

ferric-enterobactin complex

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

D-xylulose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

4-phospho-D-erythronate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-mannopyranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

hypoglycin B

2-iminosuccinate