an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

2-carboxy-L-threo-pentonate

2-carboxy-L-xylonolactone

bisorganyltrisulfane

2,3-dioxo-L-gulonate

cyclic- 3,4-O-oxalyl-L-threonate

enol-phenylpyruvate

dehydroascorbate (bicyclic form)

cyclic-2,3-O-oxalyl-L-threonate

pyruvic oxime

L-dehydro-ascorbate

(4-hydroxyphenyl)acetate

L-xylo-hex-3-ulono-1,4-lactone

L-gulono-1,4-lactone

benzoylsuccinyl-CoA

2-amino-3-carboxymuconate-6-semialdehyde

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

α-D-galacturonate 1-phosphate

ethanolamine

(L-threonylcarbamoyl)adenylate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

selenodiglutathione

glutathioselenol

glutathione disulfide

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

2-oleoylglycerol

2-maleylacetate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

N⁵-carboxyaminoimidazole ribonucleotide

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

1,4-dihydroxy-2-naphthoate

2-methyl-1,4-benzoquinone

2-iminoacetate

methyl-1,4-benzoquinol

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

nigerose

creatinine

4-amino-4-deoxychorismate

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

(S)-4-hydroxy-2-oxohexanoate

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(E)-2-benzylidenesuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

2,3-didehydroadipyl-CoA

2-isopropylmaleate

ammonia

thiamine phosphate

thiamine diphosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(α-hydroxyethyl)thiamine diphosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-pyrimidinemethanol

4'-phosphopantetheine

carbon monoxide

4-pyridoxolactone

propanoyl phosphate

propionamide

(indol-3-yl)acetamide

hydroxylamine

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

3α,7α-dihydroxy-24-oxo-5β-cholestanoyl CoA

(S)-2,3,4,5-tetrahydrodipicolinate

acetyl phosphate

5-oxo-L-proline

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

histidinal

histidinol

(S)-4-amino-5-oxopentanoate

lipid X

adenosine 3',5'-bisphosphate

3'-phosphoadenylyl-sulfate

hydrogen selenide

hydroxypyruvate

L-canavanine

lipid A disaccharide (E. coli)

lipid IV_A

oxalosuccinate

carbonic acid

L-β-lysine

(2S)-2-isopropylmalate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

dethiobiotin

pimeloyl-CoA

8-amino-7-oxononanoate

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

(2S)-4-acetamido-2-aminobutanoate

ectoine

2-C-methyl-D-erythritol 4-phosphate

H₂

α-D-glucosamine 1-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

3-deoxy-α-D-manno-2-octulosonate

5-amino-6-(5-phospho-D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(D-ribitylamino)uracil

3-phosphooxypyruvate

orotidine 5'-phosphate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

3-methyl-2-oxobutanoate

coproporphyrinogen III

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

S-adenosyl 3-(methylsulfanyl)propylamine

urea

(S)-dihydroorotate

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

hydrogen peroxide

S-Inosyl-L-homocysteine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

preuroporphyrinogen

5-aminolevulinate

porphobilinogen

citrate

(R)-4'-phosphopantothenoyl-L-cysteine

4-phosphooxy-L-threonine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

quinolinate

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

3-dehydroshikimate

3-dehydroquinate

shikimate

prenyl diphosphate

isopentenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

shikimate 3-phosphate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

L-histidinol phosphate

2-dehydropantoate

succinate semialdehyde

5-carboxymethyl-2-hydroxymuconate

5-enolpyruvoyl-shikimate 3-phosphate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

N-(5-phosphoribosyl)-anthranilate

anthranilate

CO₂

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

N-acetyl-L,L-2,6-diaminopimelate

selenophosphate

methylarsonite

cacodylate

arsenite

methylarsonate

acetoacetate

2-oxoglutaramate

carbamoyl phosphate

glycerone phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

O-acetyl-L-serine

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

oxaloacetate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

2-phosphoglycolate

glycolate

nicotinate adenine dinucleotide

H₂O

phosphoenolpyruvate

phenylacetate

cobalt-precorrin-3

cobalt-precorrin-4

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(I)alamin

adenosylcobalamin

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-5A

protoheme

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

nicotinamide

acetamide

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

siroheme

hydrogen sulfide

oxygen

sn-glycerol 3-phosphate

(R)-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

1-oleoyl-2-lyso-glycerone phosphate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

5,10-methenyltetrahydrofolate mono-L-glutamate

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

3,24-dioxocholest-4-en-26-oyl-CoA

3-oxochol-4-en-24-oyl-CoA

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

(indol-3-yl)acetate

S-(hydroxymethyl)glutathione

dimethyl sulfide

glutathione

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

Fe³⁺

ammonium

Na⁺

H⁺

Co²⁺

Cu²⁺

Cd²⁺

Ni²⁺

Fe²⁺

trimethyl sulfonium

hydrogensulfite

sulfate

selenite

selenide

selenate

superoxide

sulfite

nitrite

nitrate

thiosulfate

hydrogencarbonate

molybdate

phosphonate

phosphate

triphosphate

diphosphate

chloride

D-glucono-1,5-lactone

cis-dienelactone

trans-dienelactone

L-galactono-1,4-lactone

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

(S)-3-aminobutanoyl-CoA

2-methylbutanoyl-CoA

methylacrylyl-CoA

(2E,5Z)-tetradecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

isobutanoyl-CoA

chenodeoxycholoyl-CoA

3α,7α,12α-trihydroxy-24-oxo-5-β-cholestanoyl CoA

choloyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

malonyl-CoA

phenylacetyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

CoA-disulfide

3'-dephospho-CoA

linoleoyl-CoA

α-linolenoyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E)-octadec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxyoctadecanoyl-CoA

cerotoyl-CoA

2-carboxy-cerotoyl-CoA

(Z)-15-tetracosenoyl-CoA

butanoyl-CoA

propanoyl-CoA

hexanoyl-CoA

lauroyl-CoA

decanoyl-CoA

octanoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

3-oxodecanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-myristoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

FMNH₂

FMN

FADH₂

FAD

(S)-NADHX

(R)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinol

menaquinol-8

menaquinol-6

menaquinol-7

demethylmenaquinol-8

demethylmenaquinol-6

demethylmenaquinol-7

caldariellaquinone

glycine betaine

N,N-dimethylglycine

monodehydroascorbate radical

nitric oxide

4-methylphenol

hippurate

L-homocysteine

(S)-2-chloropropanoate

molybdopterin

coenzyme A

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

tetrahydropteroyl tri-L-glutamate

5,6,7,8-tetrahydrofolate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

7,8-dihydrofolate monoglutamate

L-ascorbate

nicotinate

riboflavin

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxal

pyridoxine 5'-phosphate

menadione

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

guanine

adenine

2'-deoxyadenosine

2'-deoxyguanosine

guanosine

adenosine

hypoxanthine

dAMP

dGMP

dITP

dGTP

dATP

dIDP

dGDP

dADP

IDP

GDP

ADP

GMP

IMP

XMP

AMP

ITP

GTP

ATP

uridine 2'3'-cyclic monophosphate

uridine 3'-monophosphate

cytidine 2',3'-cyclic monophosphate

cytidine-3'-monophosphate

dCMP

dCTP

dTMP

dTDP

dTTP

uracil

dUDP

dCDP

orotate

dUTP

dUMP

UDP

CTP

CDP

UTP

cytidine

uridine

UDP-α-D-galactofuranose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-glucuronate

UDP-α-D-galacturonate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-glucose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-α-D-glucose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

UMP

CMP

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

preQ₁

(2Z)-2-aminobut-2-enoate

2-iminopropanoate

2-aminoprop-2-enoate

agmatine

putrescine

spermidine

betaine aldehyde hydrate

choline

betaine aldehyde

(indole-3-yl)acetonitrile

preQ₀

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

2-[(1R,6S)-1,6-dihydroxycyclohexa-2,4-dien-1-yl]acetyl-coA

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

menadiol

phenol

protocatechuate

4-aminobenzoate

benzoate

catechol

(3E)-2-oxohex-3-enedioate

chorismate

fumarate

succinate

L-aspartate

(S)-malate

(2R,3S)-2-methylisocitrate

cis-2-methylaconitate

cis-aconitate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

D-threo-isocitrate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

propanoate

formate

acetate

pyruvate

butanoate

decanoate

octanoate

(15Z)-tetracosenoate

oleate

(3E,5Z)-tetradecadienoate

linoleate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

phytenate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

palmitate

pristanate

D-gluconate

(R)-pantoate

aldehydo-D-glucuronate

aldehydo-D-galacturonate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

L-α-amino-ε-keto-pimelate

L-serine

creatine

β-alanine

L-leucine

L-proline

glycine

L-glutamine

L-alanine

D-glutamate

L-glutamate

N^ω-hydroxy-L-arginine

L-arginine

L-histidine

L-lysine

2-hydroxy-5-oxoproline

L-aspartyl-4-phosphate

3-phospho-L-serine

O-acetyl-L-homoserine

sarcosine

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

L-cysteine

L-threonine

L-tyrosine

L-tryptophan

L-phenylalanine

D-aspartate

D-alanine

L-citrulline

L-isoleucine

L-valine

L-4-hydroxyglutamate semialdehyde

O-phospho-L-homoserine

S-sulfo-L-cysteine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homoserine

L-ornithine

meso-diaminopimelate

L-selenocysteine

L-methionine

L-2,4-diaminobutanoate

L,L-diaminopimelate

a coenzyme-A group

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

diacetyl

butan-1-al

1-propanal

formaldehyde

acetaldehyde

(S)-lactaldehyde

phytenal

L-glyceraldehyde

D-glyceraldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-ribopyranose

β-D-galactopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

butan-1-ol

propan-1-ol

methanol

ethanol

phytol

glycerol

myo-inositol

scyllo-inosose

1-amino-1-deoxy-scyllo-inositol

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 4-monophosphate

1D-myo-inositol 3-monophosphate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

(2E,6E)-farnesyl diphosphate

phytyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

heptosyl-Kdo₂-lipid A

(heptosyl)₂-Kdo₂-lipid A

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-oleoyl-sn-glycerol 3-phosphate

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

iron(III) dicitrate

ferric-enterobactin complex

maltotriose

maltotetraose

sucrose

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

a peptidoglycan dimer (mycobacteria)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^F-phosphate

CMP-3-deoxy-β-D-manno-octulosonate

GDP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

L-gulonate

aldehydo-L-galactonate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

pppGpp

ppGpp

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

D-alanyl-D-alanine

2-iminobutanoate

2-iminosuccinate