an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

adenosine 5'-phosphosulfate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

2-amino-3-carboxymuconate-6-semialdehyde

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

(R)-1-amino-2-propanol O-2-phosphate

dialurate

4-amino-2-methyl-5-pyrimidinemethanol

3-phosphooxypyruvate

autoinducer 2

(1E,2Z)-3-hydroxy-5,9,17-trioxo-4,5:9,10-disecoandrosta-1 (10),2-dien-4-oate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(2E)-3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]prop-2-enoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-indene-4-carboxylate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

2-dehydro-3-deoxy-D-galactonate 6-phosphate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

7-epicholate

histidinal

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

pseudouridine

α-D-galacturonate 1-phosphate

L-gulono-1,4-lactone

L-xylo-hex-3-ulono-1,4-lactone

L-dehydro-ascorbate

(4-hydroxyphenyl)acetate

1-piperideine 6-carboxylate

pyruvic oxime

dehydroascorbate (bicyclic form)

ammonia

5-hydroxyindole thiazolidine carboxylate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

2,3-dioxo-L-gulonate

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

2-carboxy-L-xylonolactone

2-carboxy-L-threo-pentonate

(R)-4'-phosphopantothenoyl-L-cysteine

(R)-4'-phosphopantothenate

CO₂

4'-phosphopantetheine

H₂O

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-iminoacetate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

dihydromethanophenazine

CoB-CoM heterodisulfide

methanophenazine

coenzyme B

H₂

hydrogen peroxide

3-dehydroshikimate

shikimate

3-dehydroquinate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

ethanolamine

2-dehydropantoate

coproporphyrinogen III

pseudouridine 5'-phosphate

glycerone phosphate

prephenate

S-ribosyl-L-homocysteine

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

phosphoenolpyruvate

shikimate 3-phosphate

isopropylamine

N-isopropylammelide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

histidinol

L-histidinol phosphate

carbonic acid

carbamoyl phosphate

(S)-dihydroorotate

orotidine 5'-phosphate

oxaloacetate

acetyl phosphate

α-ribazole 5'-phosphate

β-nicotinate D-ribonucleotide

5,6-dimethylbenzimidazole

α-ribazole

γ-L-glutamyl 5-phosphate

selenophosphate

3-hydroxypropanal

2-phenylethanol

3-methylbutanal

3-methylbutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

isobutanol

2-methylbutanal

2-methylbutanol

indole-3-glycol aldehyde

indole-3-glycol

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

8-amino-7-oxononanoate

pimeloyl-CoA

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

lipid A disaccharide (E. coli)

lipid X

2-oxoglutaramate

quinolinate

L-selenocystathionine

prenyl diphosphate

isopentenyl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

acetoacetate

ADP-L-glycero-β-D-manno-heptose

ADP-D-glycero-β-D-manno-heptose

3-methyl-2-oxobutanoate

N²-succinylglutamate

trypanothione

glutathionylspermidine

nicotinate adenine dinucleotide

3-ureidopropanoate

4-imidazolone-5-propanoate

urocanate

4-(β-D-ribofuranosyl)aminobenzene-5'-phosphate

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

lipid IV_A

O-acetyl-L-serine

hydrogen selenide

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

(L-threonylcarbamoyl)adenylate

2-dehydro-3-deoxy-D-galactonate

dihydroxyacetone

propanoyl phosphate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

N-Formyl-L-kynurenine

2-dehydro-3-deoxy-D-gluconate

methylamine

(3S,5S)-3,5-diaminohexanoate

L-β-lysine

hydroxylamine

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

dethiobiotin

7,8-diaminopelargonate

formamide

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-oxopropanoyl-CoA

3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoyl-CoA

nigerose

4-pyridoxolactone

4-amino-4-deoxychorismate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

L-canavanine

thiamine diphosphate

citrate

mesaconate

DNA without lesion

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

tartronate semialdehyde

(2S,3S)-2,3-dihydroxy-5-oxohexanedioate

5-dehydro-4-deoxy-D-glucarate

benzoylsuccinyl-CoA

2-carboxymethyl-3-hydroxyphenylpropanoyl-CoA

(S)-5-amino-3-oxohexanoate

chloroacetaldehyde

3-deoxy-D-manno-octulosonate 8-phosphate

xanthine

urea

(indol-3-yl)acetamide

4-guanidinobutanoate

4-guanidinobutyramide

propionamide

acrylate

acrylamide

2-C-methyl-D-erythritol 4-phosphate

pyrazine-2-carboxylate

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

(S)-4-amino-5-oxopentanoate

preuroporphyrinogen

porphobilinogen

5-aminolevulinate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

(S)-2-amino-6-oxohexanoate

(E)-glutaconate

glutathione disulfide

α-D-glucosamine 1-phosphate

arsenite

β-D-ribosylnicotinate

(5R)-5-benzyl-hydantoin

(5S)-5-benzyl-hydantoin

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

histamine

chloramphenicol

3-deoxy-α-D-manno-2-octulosonate

oxalosuccinate

(R)-2-hydroxyglutarate

5,10-methenyltetrahydrofolate mono-L-glutamate

monodehydroascorbate radical

(S)-citramalate

CMP-N-acetyl-β-neuraminate

1-oleoyl-2-lyso-glycerone phosphate

N-acetyl-β-neuraminate 9-phosphate

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-chloroacetate

oxygen

hydrogen sulfide

uroporphyrinogen-III

uroporphyrinogen-I

protoporphyrinogen IX

Mg-protoporphyrin

protoporphyrin IX

siroheme

hemin

protoheme

cobalt-precorrin-5A

cobalt-precorrin-4

cobalt-precorrin-6A

cobalt-precorrin-5B

cobalt-precorrin-6B

cobalt-precorrin-8

cobalt-precorrin-7

cobalt-precorrin-3

cobalt-factor III

cobalt-sirohydrochlorin

cobalt-precorrin-2

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosylcobalamin

adenosyl-cobinamide phosphate

adenosylcobinamide

cob(I)alamin

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cobyrinate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

adenosylcobyrate

phosphonoacetaldehyde

(2-aminoethyl)phosphonate

ethylphosphate

DNA with lesion

4-methylphenol

L-homocysteine

hypoglycin B

L-glutamine

glycine

L-alanine

L-proline

L-serine

L-leucine

L-lysine

L-histidine

L-arginine

L-glutamate

D-glutamate

β-alanine

(R)-3-amino-2-methylpropanoate

D-serine

L-citrulline

L-isoleucine

L-valine

L-methionine

L-aspartate

L-asparagine

L-threonine

L-phenylalanine

L-tyrosine

L-tryptophan

L-cysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

hypoglycin A

L-canaline

L-ornithine

meso-diaminopimelate

L-selenocysteine

L-isoglutamine

L-aspartyl-4-phosphate

L-cystathionine

L,L-diaminopimelate

formyl-L-isoglutamine

N-acetyl-L-aspartate

N-formyl-L-methionine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

2-hydroxy-5-oxoproline

seleno-L-homocysteine

3-phospho-L-serine

O-acetyl-L-homoserine

sarcosine

N-carbamoylglycine

(2S, 3S)-3-methylaspartate

D-alanine

D-aspartate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

GTP

5'-deoxyadenosine

ADP

ATP

ppGpp

GDP

pppGpp

AMP

dADP

dATP

dGDP

dGTP

hypoxanthine

GMP

adenylo-succinate

IMP

guanosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

adenosine 2',3'-cyclic monophosphate

XMP

2'-deoxyguanosine

2'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

2'-deoxyinosine

5'-deoxy-5'-fluoroadenosine

two adjacent thymidines in DNA

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

NADPH

NADH

NADP⁺

NAD⁺

preQ₁

adenine

guanine

thymine

uracil

cytidine-3'-monophosphate

uridine 3'-monophosphate

cyclic di-3',5'-guanylate

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

dCDP

dUDP

dTDP

dTTP

dUTP

dCTP

dUMP

dTMP

dCMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

CMP

UMP

UDP

CDP

CTP

UTP

5,6-dihydrothymine

5,6-dihydrouracil

UDP-α-D-glucose

GDP-α-D-glucose

dTDP-α-D-glucose

ADP-α-D-glucose

CDP-α-D-glucose

UDP-N-acetyl-α-D-fucosamine

UDP-N-acetyl-α-D-quinovosamine

UDP-α-D-galactofuranose

UDP-α-D-galacturonate

UDP-α-D-glucuronate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-2-acetamido-2,6-dideoxy-β-L-arabino-hex-4-ulose

UDP-2-acetamido-2,6-dideoxy-α-D-xylo-hex-4-ulose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-galactosamine

GDP-α-D-mannuronate

GDP-α-D-mannose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CDP-4-dehydro-6-deoxy-α-D-glucose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CMP-3-deoxy-β-D-manno-octulosonate

adenosine

guanosine

xanthosine

inosine

thymidine

2'-deoxyuridine

2'-deoxycytidine

uridine

cytidine

orotate

sirohydrochlorin

precorrin-1

precorrin-2

precorrin-6A

precorrin-6B

precorrin-4

precorrin-3B

precorrin-5

precorrin-3A

precorrin-8x

precorrin-7

(S)-1-pyrroline-5-carboxylate

hydantoin

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropterin-6-ylmethyl-4-(β-D-ribofuranosyl)aminobenzene 5'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

5,6,7,8-tetrahydrofolate

tetrahydropteroyl tri-L-glutamate

(6S)-5-formyl-tetrahydrofolate mono-L-glutamate

5,10-methylenetetrahydropteroyl mono-L-glutamate

10-formyl-tetrahydrofolate mono-L-glutamate

5-methyltetrahydropteroyl mono-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

6,7-dimethyl-8-(1-D-ribityl)lumazine

FMNH₂

reduced riboflavin

FMN

FAD

riboflavin

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

chloramphenicol 3-acetate

cyanuric acid

4-tyrosol

urate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

phenol

4-aminobenzoate

indole

phenylacetaldehyde

(4-hydroxyphenyl)acetaldehyde

3-methoxy-4-hydroxyphenylglycol

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

6-trans-3-oxo-tridecenoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

mono-trans,octa-cis-decaprenyl diphosphate

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

(3S)-linalool

(3R)-linalool

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-oleoyl-sn-glycerol 3-phosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

dioleoyl phosphatidate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

α-Kdo-(2→6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

ferrichrome

L-galactono-1,4-lactone

D-glucono-1,5-lactone

4-hydroxybutanoyl-CoA

acetyl-CoA

vinylacetyl-CoA

malonyl-CoA

3'-dephospho-CoA

isobutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

(3S)-hydroxyadipyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

(3R,11Z,14Z,17Z)-3-hydroxyicosatrienoyl-CoA

(11Z,14Z,17Z)-3-oxoicosatrienoyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

trans-feruloyl-CoA

trans-caffeoyl-CoA

(S)-3-aminobutanoyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

succinyl-CoA

phytenoyl-CoA

oleoyl-CoA

octanoyl-CoA

decanoyl-CoA

pristanoyl-CoA

palmitoyl-CoA

propanoyl-CoA

butanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(S)-3-hydroxyhexanoyl-CoA

(S)-3-hydroxyhexadecanoyl-CoA

(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxohexanoyl-CoA

3-oxo-palmitoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

(2E)-dec-2-enoyl-CoA

crotonyl-CoA

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-cysteinylglycine

N-acetyl-L-glutaminyl-L-glutamine amide

N-acetyl-L-glutaminyl-L-glutamine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

aldehydo-L-galactonate

L-gulonate

D-galactonate

D-altronate

D-gluconate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

maltotriose

sucrose

maltotetraose

maltopentaose

maltohexaose

maltoheptaose

aldehydo-D-ribose

β-D-ribopyranose

α-D-ribofuranose

β-D-ribofuranose

β-D-glucopyranose

α-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

D-glyceraldehyde

glycolaldehyde

D-xylulose

keto-D-fructose

β-D-fructofuranose

β-L-fucopyranose

α-L-fucopyranose

L-fuculose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-neuraminate

N-acetyl-β-D-glucosamine

N-acetyl-α-D-mannosamine

N-acetyl-β-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

glycerol

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

4-phospho-D-erythronate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

L-fuculose 1-phosphate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan with L,D cross-links (mycobacteria)

a peptidoglycan with D,D cross-links (mycobacteria)

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

sucrose 6^F-phosphate

aldehydo-D-galacturonate

a methyl group

(S)-lactaldehyde

(R)-lactaldehyde

butan-1-al

1-propanal

isobutanal

acetaldehyde

formaldehyde

phytenal

methylglyoxal

2-oxoglutarate

pyruvate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

octanoate

decanoate

formate

acetate

propanoate

butanoate

(R)-lactate

(S)-lactate

4-hydroxybutanoate

3-(carbamoylamino)-2-methylpropanoate

chorismate

succinate

fumarate

(S)-malate

L-carnitine

(R)-pantoate

D-tagaturonate

aldehydo-D-glucuronate

pristanate

oleate

palmitate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

α-linolenate

linoleate

(15Z)-tetracosenoate

phytenate

cis-aconitate

D-threo-isocitrate

nicotinamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

pyrazinamide

acetamide

(indol-3-yl)acetate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3,24-dioxocholest-4-en-26-oyl-CoA

24-hydroxy-3-oxocholest-4-en-26-oyl-CoA

isocholate

3-dehydrocholate

cholate

glycocholate

androsta-1,4-diene-3,17-dione

androst-4-ene-3,17-dione

9α-hydroxyandrosta-1,4-diene-3,17-dione

3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione

ethylene glycol

(S)-propane-1,2-diol

(R)-propane-1,2-diol

1-amino-1-deoxy-scyllo-inositol

scyllo-inosose

butan-1-ol

phytol

propan-1-ol

ethanol

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycine betaine

choline

agmatine

spermidine

putrescine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

dimethyl sulfide

glutathione

methanethiol

S-sulfanylglutathione

(2R)-phospho-3-sulfolactate

coenzyme M

3-sulfopyruvate

L-cysteate

(2R)-3-sulfolactate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

(R)-S-lactoylglutathione

Fe³⁺

ammonium

H⁺

K⁺

Na⁺

Fe²⁺

Co²⁺

Mg²⁺

Cd²⁺

trimethyl sulfonium

hydrogensulfite

molybdate

hydrogencarbonate

sulfite

sulfate

selenide

nitrite

phosphate

diphosphate

triphosphate

L-ascorbate

nicotinate

thiamine

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxamine

pyridoxal

pyridoxal 5'-phosphate

(R)-NADHX

(S)-NADHX

coenzyme A

preQ₀

(indole-3-yl)acetonitrile