an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

phosphoenolpyruvate

DNA without lesion

glycolate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

formate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

D-gluconate 6-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

glycerone phosphate

acetyl phosphate

prenyl diphosphate

selenophosphate

CO₂

coproporphyrinogen III

isopentenyl diphosphate

2-C-methyl-D-erythritol 4-phosphate

L-selenocystathionine

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

(R)-4'-phosphopantothenate

(R)-pantothenate

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

hydrogen peroxide

O-D-alanyl-poly(ribitol phosphate)

poly(ribitol phosphate)

nicotinate adenine dinucleotide

thiamine phosphate

ethanolamine

xanthine

phosphocholine

choline

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

4-aminobutanoate

orotidine 5'-phosphate

(S)-dihydroorotate

carbamoyl phosphate

S-ribosyl-L-homocysteine

5-(methylsulfanyl)-α-D-ribose

S-methyl-5'-thioadenosine

α-D-glucosamine 1-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

O-ureido-L-homoserine

carboxyphosphate

oxaloacetate

quinolinate

6-phospho D-glucono-1,5-lactone

autoinducer 2

glutathione disulfide

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

aminoacetone

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

D-alanyl-D-alanine

carbamate

L-citrulline

L-cysteine

L-methionine

L-aspartate

L-leucine

L-alanine

glycine

L-serine

L-glutamate

L-glutamine

L-asparagine

L-tyrosine

L-threonine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-homocysteine

L-aspartate 4-semialdehyde

L-homoserine

L-canaline

L-ornithine

meso-diaminopimelate

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

N-carbamoyl-L-aspartate

L-cystathionine

D-alanine

D-glutamate

2,3-dihydroxybenzoate

acetate

orotate

oleate

(R)-lactate

pyruvate

2-oxoglutarate

chorismate

fumarate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenol

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

D-galactosylononitol

galactinol

5-phospho-α-D-ribose 1-diphosphate

D-ribitol 5-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-glyceraldehyde

glycerol

myo-inositol

D-ononitol

1-dodecanol

butan-1-ol

methylglyoxal

acetaldehyde

butan-1-al

urate

guanine

adenine

AMP

IMP

GMP

XMP

ATP

GTP

ADP

GDP

dADP

dGDP

dATP

dGTP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

thio-molybdenum cofactor

MoO₂-molybdopterin cofactor

uracil

thymine

preQ₁

isoguanine

dUMP

dUTP

CTP

UDP

dCDP

dCMP

CDP

UTP

dUDP

dTMP

dTDP

dCTP

dTTP

CDP-choline

UMP

CMP

uridine

cytidine

2'-deoxyuridine

2'-deoxycytidine

thymidine

coenzyme A

adenylo-succinate

cyclic-AMP

pppGpp

5'-deoxyadenosine

ppGpp

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

thiamine

nicotinate

cholate

glycocholate

acetyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

malonyl-CoA

oleoyl-CoA

hexadecanedioyl-CoA

18-hydroxyoleoyl-CoA

glutathione

(R)-S-lactoylglutathione

dodecyl sulfate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

methanethiol

spermidine

putrescine

2-aminoprop-2-enoate

2-iminopropanoate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

superoxide

hydroxyl radical

sulfate

molybdate

selenide

hydrogencarbonate

OH^-

chloride

phosphonate

phosphate

diphosphate

Fe³⁺

Zn²⁺

Mo²⁺

Co²⁺

Mg²⁺

Fe²⁺

ammonium

H⁺

2-chloroacetate

preQ₀

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

oxygen

hydrogen sulfide

protoporphyrinogen IX

Mg-protoporphyrin

protoporphyrin IX

uroporphyrinogen-III

protoheme

DNA with lesion