an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

N⁵-carboxyaminoimidazole ribonucleotide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

mercuriphenyl acetate

1,6-anhydro-N-acetyl-β-muramate

(R)-mevalonate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

N-acetyl-D-muramate 6-phosphate

2-C-methyl-D-erythritol 4-phosphate

orotidine 5'-phosphate

(S)-dihydroorotate

(lipoyl)adenylate

thiamine diphosphate

thiamine phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

hydrogen peroxide

selenophosphate

dihydroxyacetone

autoinducer 2

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

nicotinate adenine dinucleotide

prenyl diphosphate

O-acetyl-L-serine

salicyl alcohol

L-selenocystathionine

α-D-glucosamine 1-phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

glycerone phosphate

DNA without lesion

4-methyl-2-oxopentanoate

(R)-2-hydroxy-4-methylpentanoate

β-D-ribosylnicotinate

citrate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

carbamoyl phosphate

carboxyphosphate

1,4-dihydroxy-2-naphthoate

N⁴-(β-N-acetyl-D-glucosaminyl)-L-asparagine

N-acetyl-β-glucosaminylamine

β-nicotinate D-ribonucleotide

3-keto-L-gulonate 6-phosphate

CO₂

S-methyl-5'-thioadenosine

5-(methylsulfanyl)-α-D-ribose

S-ribosyl-L-homocysteine

4'-phosphopantetheine

glutathione disulfide

phosphoenolpyruvate

isopentenyl diphosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

glycolate

2-dehydropantoate

ethanolamine

xanthine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

oxaloacetate

acetyl phosphate

H₂O

protoheme

protoporphyrin IX

hydrogen sulfide

Hg⁰

oxygen

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

DNA with lesion

L-homocysteine

preQ₀

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

K⁺

Na⁺

H⁺

ammonium

Mn²⁺

Fe²⁺

Hg²⁺

nitrate

OH^-

superoxide

selenide

hydrogencarbonate

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

2-aminoprop-2-enoate

putrescine

spermidine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

glutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

malonyl-CoA

3'-dephospho-CoA

acetyl-CoA

crotonyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

butanoyl-CoA

propanoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

riboflavin

thiamine

nicotinate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

isoguanine

8-oxo-dGTP

8-oxo-GTP

dGMP

dAMP

ITP

pppGpp

ppGpp

XMP

GMP

IMP

dGTP

dATP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

GTP

adenylo-succinate

dADP

dGDP

GDP

AMP

ATP

ADP

(R)-NADPHX

(S)-NADPHX

xanthosine

guanosine

inosine

adenosine

cytidine

uridine

2'-deoxycytidine

2'-deoxyuridine

thymidine

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dUDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

ADP-α-D-glucose

preQ₁

uracil

thymine

guanine

adenine

UDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

reduced riboflavin

orotate

benzene

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

methylglyoxal

butan-1-al

acetaldehyde

(S)-lactaldehyde

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

butan-1-ol

methanol

glycerol

D-ribitol 5-phosphate

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

raffinose

stachyose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

α-L-fucopyranose

β-L-fucopyranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

methyl β-D-glucoside 6-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

(3E)-2-oxohex-3-enedioate

succinate

fumarate

L-aspartate

3-phenyl-2-oxopropanoate

pyruvate

2-oxoglutarate

acetate

formate

(R)-lactate

butanoate

palmitate

(R)-pantoate

carbamate

L-serine

L-cysteine

L-tyrosine

L-glutamine

L-threonine

glycine

L-glutamate

L-methionine

L-isoleucine

L-leucine

L-tryptophan

L-valine

L-alanine

L-phenylalanine

β-alanine

D-glutamate

D-alanine

L-cystathionine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

seleno-L-homocysteine

L-selenomethionine

S-methyl-L-cysteine

L-aspartate 4-semialdehyde

L-homoserine

O-succinyl-L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a methyl group