an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

quinolinate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N-succinyl-L,L-2,6-diaminopimelate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

urea

1,4-dihydroxy-2-naphthoyl-CoA

1,4-dihydroxy-2-naphthoate

propanoyl phosphate

N-(5-phosphoribosyl)-anthranilate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

xanthine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

5'-phosphoguanylyl(3'→5')guanosine

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

hydrogen peroxide

γ-L-glutamyl 5-phosphate

4-amino-4-deoxychorismate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

glycerone phosphate

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

thiamine phosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

(R)-mevalonate

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

formate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

orotidine 5'-phosphate

carboxyphosphate

(S)-dihydroorotate

carbamoyl phosphate

2-dehydropantoate

L-canavanine

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

4'-phosphopantetheine

autoinducer 2

L-selenocystathionine

CDP-glycerol

3-phosphooxypyruvate

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

histidinal

histidinol

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

L-histidinol phosphate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-dehydroshikimate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

oxaloacetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

CO₂

(4,5-dihydro-5-oxofuran-2-yl)-acetate

salicyl alcohol

ethanolamine

isopentenyl diphosphate

prenyl diphosphate

α-D-glucosamine 1-phosphate

acetyl phosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

thiamine diphosphate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

phosphoenolpyruvate

glycolate

D-gluconate 6-phosphate

selenophosphate

glutathione disulfide

anthranilate

S-ribosyl-L-homocysteine

H₂O

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

L-homocysteine

oxygen

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

α-D-glucosamine 6-phosphate

preQ₀

Fe³⁺

K⁺

Na⁺

H⁺

ammonium

Mn²⁺

Co²⁺

Fe²⁺

OH^-

superoxide

hydrogencarbonate

selenide

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

2-aminoprop-2-enoate

N¹-acetylspermidine

N-acetylputrescine

N¹-acetylspermine

spermidine

putrescine

spermine

cadaverine

glutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

succinyl-CoA

acetyl-CoA

propanoyl-CoA

lauroyl-CoA

palmitoyl-CoA

stearoyl-CoA

acetoacetyl-CoA

riboflavin

nicotinate

thiamine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

FMN

FAD

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

glycine betaine

isoguanine

8-oxo-dGTP

8-oxo-GTP

dGMP

dAMP

ITP

ppGpp

adenylo-succinate

hypoxanthine

pppGpp

XTP

XMP

IMP

GMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

dGTP

dGDP

dATP

dADP

GTP

GDP

ADP

ATP

AMP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

guanosine

xanthosine

cytidine

uridine

2'-deoxycytidine

thymidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dTMP

dUMP

CMP

UMP

dUDP

dTDP

dCDP

CDP

UDP

preQ₁

uracil

guanine

adenine

UDP-α-D-glucose

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-glucosamine 3'-phosphate

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

coenzyme A

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

protocatechuate

4-aminobenzoate

diacetyl

(S)-acetoin

(R)-acetoin

methylglyoxal

butan-1-al

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

butan-1-ol

methanol

glycerol

octyl α-D-glucopyranoside

octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside

sucrose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

β-D-fructofuranose

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-gluconate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

L-aspartate

3-carboxy-cis,cis-muconate

3-oxoadipate

3-phenyl-2-oxopropanoate

2-oxobutanoate

2-oxoglutarate

pyruvate

laurate

(R)-lactate

palmitate

stearate

acetate

(R)-pantoate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

L-tyrosine

L-asparagine

glycine

L-threonine

L-glutamine

L-histidine

L-lysine

L-arginine

L-glutamate

L-methionine

L-tryptophan

L-proline

L-phenylalanine

L-isoleucine

L-leucine

L-valine

L-alanine

β-alanine

D-glutamate

D-alanine

L,L-diaminopimelate

L-ornithine

L-cystathionine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

seleno-L-homocysteine

3-phospho-L-serine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

L-citrulline

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine