an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

autoinducer 2

quinolinate

urea

L-canavanine

canavaninosuccinate

L-arginino-succinate

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

L-selenocystathionine

(S)-mandelate

(R)-mandelate

O-ureido-L-homoserine

1,4-dihydroxy-2-naphthoate

(S)-dihydroorotate

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

histamine

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-phosphooxypyruvate

2-dehydropantoate

acetoacetate

dihydroxyacetone

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

orotidine 5'-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N-succinyl-L,L-2,6-diaminopimelate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

β-D-fructose 2,6-bisphosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

xanthine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

D-gluconate 6-phosphate

CDP-glycerol

nicotinate adenine dinucleotide

glycerone phosphate

α-D-glucosamine 1-phosphate

glutathione disulfide

selenophosphate

acetyl phosphate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

S-ribosyl-L-homocysteine

4'-phosphopantetheine

DNA without lesion

hydrogen peroxide

oxaloacetate

citrate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

phosphoenolpyruvate

carbamoyl phosphate

carboxyphosphate

formate

(R)-mevalonate

CO₂

(R)-5-phosphomevalonate

(R)-mevalonate diphosphate

propanoyl phosphate

thiamine diphosphate

isopentenyl diphosphate

prenyl diphosphate

glycolate

5-methylcytosine

H₂O

oxygen

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

Fe³⁺

H⁺

ammonium

Co²⁺

Fe²⁺

Ca²⁺

OH^-

superoxide

selenide

hydrogencarbonate

phosphonate

phosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

2-aminoprop-2-enoate

spermidine

putrescine

S-(hydroxymethyl)glutathione

glutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

(R)-S-lactoylglutathione

malonyl-CoA

succinyl-CoA

acetyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

propanoyl-CoA

lauroyl-CoA

stearoyl-CoA

palmitoyl-CoA

acetoacetyl-CoA

glycocholate

cholate

riboflavin

nicotinate

thiamine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

glycine betaine

isoguanine

8-oxo-dGTP

8-oxo-GTP

adenosine 2',3'-cyclic monophosphate

adenosine 3'-monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenylo-succinate

hypoxanthine

dGMP

dAMP

XMP

IMP

pppGpp

ppGpp

dIDP

dITP

IDP

ITP

dGTP

dATP

GMP

GTP

dADP

dGDP

GDP

AMP

ATP

ADP

5-fluorocytosine

5-fluorouracil

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dUTP

dCTP

dTTP

UTP

CTP

dCMP

dUMP

dTMP

UMP

CMP

dTDP

dUDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

uridine 3'-monophosphate

cytidine-3'-monophosphate

cytosine

uracil

thymine

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactofuranose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

coenzyme A

(S)-1-pyrroline-5-carboxylate

reduced riboflavin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

orotate

2,3-dihydroxybenzoate

protocatechuate

4-aminobenzoate

acetone

methylglyoxal

acetaldehyde

formaldehyde

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

methanol

ethanol

glycerol

1-(β-D ribofuranosyl)nicotinamide

octyl α-D-glucopyranoside

octyl β-1,6-D-galactofuranosyl-α-D-glucopyranoside

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

D-xylulose

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-galactose 1-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-gluconate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

fumarate

succinate

L-aspartate

(S)-malate

3-carboxy-cis,cis-muconate

3-oxoadipate

2-oxoglutarate

pyruvate

laurate

(R)-lactate

stearate

palmitate

(R)-pantoate

acetate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-cysteine

L-tyrosine

L-glutamine

L-threonine

glycine

L-histidine

L-lysine

L-arginine

L-glutamate

L-selenocysteine

L-proline

L-alanine

L-leucine

L-methionine

β-alanine

D-glutamate

D-alanine

D-aspartate

L-cystathionine

L-ornithine

L,L-diaminopimelate

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

seleno-L-homocysteine

3-phospho-L-serine

trans-4-hydroxy-L-proline

L-citrulline

L-glutamate-5-semialdehyde

L-homocysteine

L-canaline

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

DNA with lesion

ethylphosphate