an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

4-oxoglutaramate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

3-phosphooxypyruvate

glutathione disulfide

(S)-3-methyl-2-oxopentanoate

N-acetyl-D-muramate 6-phosphate

4-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

quinolinate

(R)-pantothenate

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

urea

(lipoyl)adenylate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

xanthine

(R)-mevalonate diphosphate

(R)-mevalonate

(R)-5-phosphomevalonate

2-dehydropantoate

D-gluconate 6-phosphate

carboxyphosphate

carbamoyl phosphate

methylsalicylate

3-keto-L-gulonate 6-phosphate

carbonic acid

O-acetyl-L-serine

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

3-dehydroquinate

3-dehydroshikimate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

S-ribosyl-L-homocysteine

autoinducer 2

acetoacetate

5-dehydro-D-gluconate

3-(4-deoxy-β-D-gluc-4-enuronosyl)-N-acetyl-D-glucosamine

oxaloacetate

1,4-dihydroxy-2-naphthoate

prephenate

(S)-2,3-dihydrodipicolinate

acetyl phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

β-D-ribosylnicotinate

thiamine diphosphate

O-ureido-L-homoserine

3-deoxy-D-arabino-heptulosonate 7-phosphate

salicyl alcohol

glycerone phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

4-amino-4-deoxychorismate

propanoyl phosphate

coproporphyrinogen III

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

CO₂

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

formamide

4-imidazolone-5-propanoate

urocanate

isopentenyl diphosphate

4,4'-dihydroxy-3,3'-dimethoxystilbene

vanillin

2-(α-hydroxyethyl)thiamine diphosphate

α-D-glucosamine 1-phosphate

hydrogen peroxide

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

luteolin 7-O-β-D-diglucuronide

luteolin 7-O-β-D-glucuronide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

orotidine 5'-phosphate

(S)-dihydroorotate

2-dehydro-3-deoxy-D-gluconate

glycolate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate

shikimate 3-phosphate

DNA without lesion

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

4-hydroxy-2-nonenal

prenyl diphosphate

L-selenocystathionine

H₂O

formate

phosphoenolpyruvate

γ-L-glutamyl 5-phosphate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

L-homocysteine

ethylphosphate

hydrogen cyanide

protoheme

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

α-D-glucosamine 6-phosphate

N-acetyl-D-mannosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

preQ₀

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

ammonium

H⁺

Mg²⁺

Cu²⁺

Co²⁺

Zn²⁺

Mn²⁺

Fe²⁺

hydrogensulfite

OH^-

hydrogencarbonate

thiosulfate

sulfite

superoxide

phosphonate

phosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

ferrichrome

2-aminoprop-2-enoate

spermidine

putrescine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

thiocyanate

glutathione

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

all-trans-retinyl palmitate

(S)-3-hydroxy-3-methylglutaryl-CoA

malonyl-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

3'-dephospho-CoA

oleoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

butanoyl-CoA

propanoyl-CoA

18-hydroxylinoleoyl-CoA

18-hydroxyoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

hexadecanedioyl-CoA

crotonyl-CoA

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

riboflavin

nicotinate

thiamine

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

pyridoxamine

pyridoxamine 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

glycine betaine

isoguanine

8-oxo-dGTP

8-oxo-GTP

dATP

dGTP

XMP

hypoxanthine

pppGpp

ppGpp

cyclic-AMP

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 3'-monophosphate

GMP

IMP

5'-deoxyadenosine

adenylo-succinate

dIDP

dITP

IDP

ITP

dADP

dGDP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

GTP

GDP

AMP

ATP

ADP

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

2-hydroxy-dATP

5-hydroxy-CTP

dUTP

dCTP

dTTP

UTP

CTP

dUMP

dTMP

dCMP

UMP

CMP

dTDP

dCDP

dUDP

CDP

UDP

β-nicotinamide D-ribonucleotide

uridine 3'-monophosphate

cytidine-3'-monophosphate

ADP-α-D-glucose

preQ₁

thymine

uracil

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

(R)-lipoate

coenzyme A

(S)-1-pyrroline-5-carboxylate

reduced riboflavin

7,8-dihydroneopterin 3'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydroneopterin

7,8-dihydromonapterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropteroate

dipicolinate

orotate

luteolin

urate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

hydroquinone

salicylate

4-aminobenzoate

methylglyoxal

glycolaldehyde

acetaldehyde

(S)-lactaldehyde

D-glyceraldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

β-D-ribopyranose

ethanol

methanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

aldehydo-D-galacturonate

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

keto-L-tagatose 6-phosphate

D-fructose 6-phosphate

L-ascorbate 6-phosphate

D-tagatofuranose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-rhamnulose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-altronate

L-idonate

D-gluconate

D-mannonate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(3E)-2-oxohex-3-enedioate

chorismate

succinate

L-aspartate

fumarate

3-phenyl-2-oxopropanoate

2-oxoglutarate

pyruvate

butanoate

(R)-3-hydroxybutanoate

(S)-lactate

(R)-lactate

palmitate

(R)-pantoate

acetate

D-tagaturonate

β-D-glucuronate

carbamate

L-serine

L-cysteine

L-tyrosine

L-asparagine

L-glutamine

glycine

L-arginine

L-histidine

L-glutamate

L-methionine

L-leucine

L-valine

L-proline

L-isoleucine

L-alanine

L-phenylalanine

β-alanine

D-glutamate

D-alanine

L-isoglutamine

L-ornithine

L,L-diaminopimelate

L-cystathionine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

seleno-L-homocysteine

3-phospho-L-serine

S-methyl-L-cysteine

trans-4-hydroxy-L-proline

L-citrulline

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

L-canaline

S-adenosyl-L-methionine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine