an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

CO₂

succinate semialdehyde

anthranilate

(S)-dihydroorotate

H₂O

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

4-imidazolone-5-propanoate

urocanate

creatinine

4-methyl-3-oxoadipate

4-methyl-3-oxoadipate-enol-lactone

(4,5-dihydro-5-oxofuran-2-yl)-acetate

4-methylsalicylate

5-methylsalicylate

coenzyme F₃₉₀-A

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

glycerone phosphate

phosphoenolpyruvate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

2-dehydro-3-deoxy-D-gluconate

6-chloro-2-hydroxy-4-carboxymuconate-6-semialdehyde

4-carboxy-2-hydroxymuconate-6-semialdehyde

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

6-chlorohydroxyquinol

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

3-(2,3-dihydroxyphenyl)propanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

3-phenylpropanoate

(E)-3-(methoxycarbonyl)pent-2-enedioate

hydrogen peroxide

β-D-fructose 2,6-bisphosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

(S)-2-amino-6-oxohexanoate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

nicotinate adenine dinucleotide

β-nicotinate D-ribonucleotide

γ-L-glutamyl 5-phosphate

histidinol

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

histidinal

quinolinate

dethiobiotin

7,8-diaminopelargonate

N-(5-phosphoribosyl)-anthranilate

2-C-methyl-D-erythritol 4-phosphate

α-ribazole 5'-phosphate

5,6-dimethylbenzimidazole

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

8-amino-7-oxononanoate

pimeloyl-CoA

mycothione

acetoacetate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

4'-phosphopantetheine

urea

L-canavanine

oxaloacetate

thiamine phosphate

(2S)-lactyl-2-diphospho-5'-guanosine

(2R,3S)-3-methylmalate

citraconate

2-isopropylmaleate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

glycolate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-phosphooxypyruvate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-acetolactate

α-ribazole

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

prenyl diphosphate

4-prenylphlorisobutyrophenone

isopentenyl diphosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

3-fumarylpyruvate

3-maleylpyruvate

4-methylgentisate

3-methylgentisate

2-dehydropantoate

N-succinyl-L,L-2,6-diaminopimelate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

urea-1-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-oxo-L-proline

xanthine

oxalosuccinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

prephenate

2-maleylacetate

α-D-glucosamine 1-phosphate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

1,4-dihydroxy-2-naphthoate

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

porphobilinogen

preuroporphyrinogen

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

1-O-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol 3-phosphate

methyl-1,4-benzoquinol

2-methyl-1,4-benzoquinone

glutathionylspermidine

(R)-4'-phosphopantothenate

(R)-pantothenate

4-amino-4-deoxychorismate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

ethanolamine

orotidine 5'-phosphate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

4-(3-methylbut-2-enyl)-L-tryptophan

carboxyphosphate

carbamoyl phosphate

carbonic acid

5-enolpyruvoyl-shikimate 3-phosphate

ectoine

(2S)-4-acetamido-2-aminobutanoate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-iminoacetate

ethylamine

N-ethylglycine

methylamine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

citrate

D-erythritol 4-phosphate

(2-hydroxyphenyl)acetate

homogentisate

hexulose 6-phosphate

4-aminobutanoate

3-oxopropanoate

2-hydroxy-3-oxosuccinate

meso-tartrate

L-tartrate

4-hydroxy-2-nonenal

(4-hydroxyphenyl)acetate

D-gluconate 6-phosphate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

DNA without lesion

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

L-arginino-succinate

canavaninosuccinate

shikimate 3-phosphate

2-succinylbenzoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

methylsalicylate

salicyl alcohol

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

coproporphyrinogen III

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-guanidino-2-oxopentanoate

hop-22(29)-ene

squalene

acetyl phosphate

L-gulono-1,4-lactone

L-β-lysine

(2,3-dihydroxybenzoyl)adenylate

(L-seryl)adenylate

2,3,5,6-tetracholorophenol

formamide

5-methylcytosine

mercuriphenyl acetate

4-fumaryl-acetoacetate

4-maleyl-acetoacetate

(E)-4-coumaroyl-CoA

phloretin

pinocembrin chalcone

(R)-mevalonate

selenophosphate

6-phospho D-glucono-1,5-lactone

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

(R)-4-phosphopantoate

3-dehydroshikimate

shikimate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

glutathione disulfide

(R)-1-amino-2-propanol O-2-phosphate

dialurate

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

1-(2-amino-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

1-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

oxalate

autoinducer 2

S-ribosyl-L-homocysteine

hydrogen selenide

glutathioselenol

selenodiglutathione

2-oxopent-4-enoate

protoanemonin

(S)-ureidoglycolate

4-oxoglutaramate

1-piperideine 6-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2-pyrone-4,6-dicarboxylate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

S-(hydroxymethyl)mycothiol

enol-phenylpyruvate

ammonia

2-hydroxy-4-carboxymuconate semialdehyde hemiacetal

(2E)-2-hydroxypenta-2,4-dienoate

(3E)-2-oxopent-3-enoate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

glycine betaine

FMN

FMNH₂

FAD

FADH₂

caldariellaquinol

3-demethylubiquinol-8

3-demethylubiquinol-10

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

ubiquinol-10

caldariellaquinone

NAD⁺

NADP⁺

NADH

NADPH

(S)-NADHX

(R)-NADHX

riboflavin

nicotinate

thiamine

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

all-trans-retinol

phenylacetate

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

cholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oyl-CoA

(25S)-3-oxocholest-4-en-26-oate

cholest-5-en-3-one

cholesterol

acetyl-CoA

2-methylacetoacetyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

succinyl-CoA

malonyl-CoA

3'-dephospho-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

isobutanoyl-CoA

5-aminolevulinyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

4-trans-undecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

5-cis, 7-trans-tetradecadienoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

(2E,5Z)-tetradecenoyl-CoA

(5Z)-tetradecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

6-cis-tridecenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

4-cis-undecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

6-trans-tridecenoyl-CoA

phenylacetyl-CoA

isovaleryl-CoA

dihydro-4-coumaroyl-CoA

4-hydroxybenzoyl-CoA

(E)-2-methylcrotonoyl-CoA

2-methylbutanoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

16-hydroxypalmitoyl-CoA

palmitoleoyl-CoA

palmitoyl-CoA

stearoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

2-hydroxyphytanoyl-CoA

phytanoyl-CoA

decanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

octanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA

18-hydroxylinoleoyl-CoA

phytenoyl-CoA

(E)-cinnamoyl-CoA

(2E)-oct-2-enoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

trans-dienelactone

cis-dienelactone

D-glucono-1,5-lactone

all-trans-retinyl palmitate

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

S-trans-1-propenyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-(hydroxymethyl)glutathione

3-sulfino-L-alanine

glutathione

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

mycothiol

thiocyanate

deacetylmycothiol

S-sulfanylglutathione

betaine aldehyde

3-amino-4-hydroxybenzaldehyde

3-amino-4-hydroxybenzoate

3-acetylamino-4-hydroxybenzaldehyde

3-acetylamino-4-hydroxybenzoate

agmatine

spermidine

putrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

(2E,6E)-farnesyl diphosphate

pristanate

superoxide

hydroxyl radical

sulfate

sulfite

selenate

hydrogencarbonate

thiosulfate

molybdate

selenide

nitrate

OH^-

selenite

hydrogensulfite

phosphate

diphosphate

triphosphate

chloride

Fe³⁺

Zn²⁺

Mo²⁺

Mn²⁺

Fe²⁺

Mg²⁺

Hg²⁺

Co²⁺

ammonium

K⁺

Na⁺

H⁺

2-chloromaleylacetate

2-chloroacetate

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

3-chloro-cis,cis-muconate

4-chlorocatechol

5-chlorosalicylate

4-chlorosalicylate

pentachlorophenol

3-chlorobenzoate

2,4,6-trichlorophenol

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

N-acetyl-β-neuraminate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

hydrogen cyanide

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-citramalate

CMP-N-acetyl-β-neuraminate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

(2S)-2-phospholactate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

2-O-(α-D-glucopyranosyl)-D-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

2-iminobutanoate

2-iminosuccinate

oxygen

hydrogen sulfide

Hg⁰

uroporphyrinogen-III

coproporphyrinogen I

uroporphyrinogen-I

protoporphyrin IX

protoporphyrinogen IX

Mg-protoporphyrin

protoheme

cob(I)alamin

adenosylcobalamin

adenosyl-cobinamide phosphate

adenosylcobinamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cobyrinate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

cobalt-precorrin-6A

cobalt-precorrin-6B

adenosylcobyrate

(S)-ureidoglycine

carboxyphosphinopyruvate

1-carboxyvinyl carboxyphosphonate

3-(hydroxyphosphinoyl)pyruvate

ethylphosphate

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

L-homocysteine

4-methylphenol

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

carbamate

L-α-amino-ε-keto-pimelate

L-aspartyl-4-phosphate

L-saccharopine

iminoarginine

S-sulfanyl-L-cysteine

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

N-formyl-L-glutamate

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

sarcosine

S-methyl-L-cysteine

3-phospho-L-serine

L-cysteine

L-methionine

L-glutamate

L-glutamine

L-aspartate

L-threonine

L-histidine

L-serine

L-valine

L-leucine

L-isoleucine

L-proline

L-alanine

L-ornithine

L-arginine

L,L-diaminopimelate

L-phenylalanine

L-asparagine

L-tryptophan

L-lysine

L-cystathionine

L-tyrosine

L-2,4-diaminobutanoate

L-isoglutamine

D-alanine

D-glutamate

D-arginine

glycine

creatine

β-alanine

(R)-β-lysine

L-citrulline

hypoglycin A

L-aspartate 4-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-homoserine

L-canaline

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

L-cystine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

palmitate

stearate

decanoate

laurate

7-hydroxylaurate

octanoate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

oleate

phytenate

(15Z)-tetracosenoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

linoleate

α-linolenate

gentisate

(R)-lactate

(S)-lactate

(R)-3-hydroxybutanoate

acetate

pyruvate

formate

propanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxoglutarate

2-oxobutanoate

glyoxylate

3-oxoadipate

trans-aconitate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

chorismate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

α,ω-9Z-octadecenedioate

fumarate

succinate

maleate

(S)-malate

salicylate

2,3-dihydroxybenzoate

5-chloroprotocatechuate

protocatechuate

trans-cinnamate

3-hydroxy-4-methyl-benzoate

3-hydroxy-5-methyl-benzoate

3-hydroxybenzoate

4-aminobenzoate

allantoate

D-mannonate

orotate

(R)-pantoate

D-gluconate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-galacturonate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(S)-(+)-allantoin

phlorisovalerophenone

geranyl diphosphate

trans,octacis-decaprenyl phosphate

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

dimeric urushiol peroxide

enterobactin

4-prenylphlorisovalerophenone

deoxycohumulone

deoxyhumulone

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-octaprenyl diphosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

trehalose-cis-keto-mono-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

L-gulonate

α,α-trehalose

maltopentaose

maltohexaose

maltotriose

maltotetraose

maltoheptaose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

UDP-α-D-galactose

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine 3'-phosphate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

GDP-α-D-glucose

GDP-α-D-mannose

glycerol

D-mannitol

erythritol

β-D-fructofuranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

N-acetyl-α-D-mannosamine

keto-D-fructose

β-D-galactopyranose

α-D-galactopyranose

D-glyceraldehyde

α-L-arabinopyranose

α-D-ribofuranose

glycolaldehyde

L-glyceraldehyde

D-xylulose

hydroquinone

4-methylcatechol

catechol

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 4-monophosphate

ethanol

1-octanol

butan-1-ol

phytol

methanol

sphingosine

sphingosine 1-phosphate

acetaldehyde

formaldehyde

butan-1-al

1-octanal

phytenal

methylglyoxal

diacetyl

4-hydroxyacetophenone

acetone

isoliquiritigenin

2',4,4',6'-tetrahydroxychalcone

(R)-acetoin

(S)-acetoin

2,5-piperidinedione

4-hydroxybenzoate

urate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

benzene

2,3,5,6-tetrachlorohydroquinone

2,3,6-trichlorohydroquinone

2,6-dichlorohydroquinone

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-isobutyl-4-hydroxy-2-pyrone

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxy-trans-cinnamate

3-hydroxy-trans-cinnamate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

molybdopterin adenine dinucleotide

cyclic pyranopterin phosphate

molybdopterin

7,8-dihydropteroate

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

adenine

guanine

adenosine

inosine

guanosine

xanthosine

2'-deoxyguanosine

2'-deoxyinosine

2'-deoxyadenosine

AMP

GMP

XMP

IMP

ATP

GTP

ITP

GDP

ADP

IDP

dADP

dIDP

dGDP

dGTP

dATP

dITP

dAMP

dGMP

hypoxanthine

precorrin-2

precorrin-1

precorrin-8x

precorrin-7

precorrin-6B

precorrin-5

precorrin-4

precorrin-3B

precorrin-6A

precorrin-3A

uracil

thymine

cytosine

isoguanine

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

UDP

dCDP

dCMP

CDP

UTP

dCTP

CTP

dUTP

dUDP

dTTP

dTDP

dTMP

dUMP

UMP

CMP

uridine

cytidine

2'-deoxyuridine

2'-deoxycytidine

thymidine

5-fluorouracil

coenzyme A

oxidized coenzyme F₄₂₀-2

oxidized coenzyme F₄₂₀-0

ppGpp

pppGpp

adenylo-succinate

cyclic-AMP

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

8-oxo-GTP

8-oxo-dGTP

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5-fluorocytosine

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA