an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

choline

H₂O

CO₂

coproporphyrinogen III

glycolate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

carbamoyl phosphate

urea-1-carboxylate

dethiobiotin

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

phosphoenolpyruvate

shikimate

3-dehydroshikimate

4-amino-4-deoxychorismate

(R)-pantothenate

β-nicotinate D-ribonucleotide

hydrogen peroxide

oxaloacetate

formamide

3-methyl-2-oxobutanoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

isopentenyl diphosphate

(S)-dihydroorotate

L-arginino-succinate

canavaninosuccinate

O-ureido-L-homoserine

L-canavanine

2-dehydro-3-deoxy-D-gluconate 6-phosphate

D-gluconate 6-phosphate

glycerone phosphate

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

acetoacetate

(E)-glutaconate

quinolinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

acetyl phosphate

formate

carboxyphosphate

thiamine diphosphate

4'-phosphopantetheine

3-phosphooxypyruvate

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

urocanate

4-imidazolone-5-propanoate

DNA without lesion

(R)-4'-phosphopantothenate

nicotinate adenine dinucleotide

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

citrate

γ-L-glutamyl 5-phosphate

N-ethylammeline

deethylsimazine

7,8-diaminopelargonate

prenyl diphosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

α-D-ribose-1-methylphosphonate 5-phosphate

chloramphenicol

O-acetyl-L-serine

lanthionine

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

xanthine

orotidine 5'-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

6-phospho D-glucono-1,5-lactone

urea

2-amino-3-carboxymuconate-6-semialdehyde

2-dehydropantoate

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

carbamate

L-citrulline

L-cysteine

L-methionine

L-aspartate

L-glutamate

L-glutamine

L-alanine

L-histidine

L-arginine

glycine

L-threonine

L-serine

L-tyrosine

L-proline

L-phenylalanine

L-leucine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

hypoglycin A

O-succinyl-L-homoserine

L-homoserine

L-glutamate-5-semialdehyde

L-homocysteine

L-ornithine

meso-diaminopimelate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

formyl-L-isoglutamine

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

(2S, 3S)-3-methylaspartate

3-phospho-L-serine

L-cystathionine

L-isoglutamine

D-glutamate

D-alanine

β-alanine

2,3-dihydroxybenzoate

4-aminobenzoate

(R)-pantoate

acetate

orotate

(S)-1-pyrroline-5-carboxylate

butanoate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

arachidonate

4-hydroxybutanoate

(R)-lactate

(R)-2-hydroxyglutarate

2-oxobutanoate

pyruvate

2-oxoglutarate

3-phenyl-2-oxopropanoate

chorismate

fumarate

succinate

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

(2E,6E)-farnesyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (mycobacteria)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

D-glyceraldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

glycerol

β-D-cellobiose

cellotetraose

butan-1-ol

ethanol

methylglyoxal

butan-1-al

acetaldehyde

adenine

guanine

GMP

AMP

XMP

IMP

ATP

GTP

ADP

GDP

dGDP

dADP

dGTP

dATP

hypoxanthine

inosine

adenosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

7,8-dihydroneopterin 3'-triphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

thymine

preQ₁

CTP

UTP

dUMP

dTMP

dCTP

dUTP

UDP

dUDP

CDP

dCDP

dTDP

dCMP

dTTP

UMP

CMP

uridine

cytidine

2'-deoxyuridine

thymidine

2'-deoxycytidine

sirohydrochlorin

precorrin-1

precorrin-2

coenzyme A

5'-deoxyadenosine

cyclic-AMP

pppGpp

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

adenylo-succinate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cyclic di-3',5'-guanylate

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

glycine betaine

(S)-NADHX

(R)-NADHX

nicotinate

thiamine

cholate

glycocholate

methane

acetyl-CoA

2-methylacetoacetyl-CoA

isobutanoyl-CoA

4-hydroxybutanoyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

(R)-2-hydroxyglutaryl-CoA

3'-dephospho-CoA

malonyl-CoA

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

propanoyl-CoA

butanoyl-CoA

18-hydroxylinoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

crotonyl-CoA

glutathione

(R)-S-lactoylglutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

methanethiol

spermidine

putrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

nitrate

hydrogencarbonate

chloride

phosphonate

phosphate

diphosphate

triphosphate

Zn²⁺

Co²⁺

Fe²⁺

ammonium

H⁺

K⁺

Na⁺

2-chloroacetate

chloramphenicol 3-acetate

preQ₀

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

oxygen

hydrogen sulfide

protoporphyrinogen IX

uroporphyrinogen-III

protoporphyrin IX

siroheme

protoheme

ethylphosphate

DNA with lesion