an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

5-oxo-L-proline

H₂O

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

CO₂

phosphoenolpyruvate

oxaloacetate

glycerone phosphate

3-methyl-2-oxobutanoate

S-methyl-5-thio-α-D-ribose 1-phosphate

S-methyl-5'-thioadenosine

5-deoxy-α-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

carbamoyl phosphate

anthranilate

1-deoxy-L-glycero-tetrulose 4-phosphate

formate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

quinolinate

β-nicotinate D-ribonucleotide

hydrogen peroxide

5-phospho-β-D-ribosylamine

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

α-D-glucosamine 1-phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

aminoacetone

(R)-5-phosphomevalonate

(R)-mevalonate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

urea

L-canavanine

3-dehydro-2-deoxy-D-gluconate

2-deoxygluconate

2-dehydropantoate

glycolate

ethanolamine

(R)-4-phosphopantoate

7-carboxy-7-deazaguanine

S-adenosyl 3-(methylsulfanyl)propylamine

coproporphyrinogen III

nicotinate adenine dinucleotide

urea-1-carboxylate

β-D-ribosylnicotinate

O-ureido-L-homoserine

α-ribazole 5'-phosphate

α-ribazole

(R)-1-aminopropan-2-ol

H₂

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

pyrazine-2-carboxylate

L-selenocystathionine

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

5-enolpyruvoyl-shikimate 3-phosphate

shikimate 3-phosphate

N-(5-phosphoribosyl)-anthranilate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

4'-phosphopantetheine

2-phosphoglycolate

(lipoyl)adenylate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropylmalate

N-ethylammeline

deethylsimazine

carbon monoxide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5-amino-6-(D-ribitylamino)uracil

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N⁵-carboxyaminoimidazole ribonucleotide

xanthine

(S)-2-amino-6-oxohexanoate

orotidine 5'-phosphate

(S)-dihydroorotate

thiamine phosphate

(R)-4'-phosphopantothenoyl-L-cysteine

thiamine diphosphate

isopentenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

prenyl diphosphate

4-prenylphlorisobutyrophenone

N-acetylglutamyl-phosphate

coenzyme F₃₉₀-A

N-acetyl-L-glutamate 5-semialdehyde

L-arginino-succinate

carboxyphosphate

(R)-mevalonate diphosphate

(R)-4'-phosphopantothenate

dialurate

5,6-dimethylbenzimidazole

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

3-dehydroshikimate

shikimate

(R)-1-amino-2-propanol O-2-phosphate

3-phosphooxypyruvate

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

carbamate

L-citrulline

L-glutamate

L-asparagine

glycine

L-aspartate

L-glutamine

L-threonine

L-tryptophan

L-serine

L-leucine

L-tyrosine

L-arginine

L-proline

L-phenylalanine

L-alanine

L-methionine

S-adenosyl-L-methionine

L-ornithine

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-canaline

L-homocysteine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

seleno-L-homocysteine

L-saccharopine

D-nopaline

N-acetyl-L-ornithine

N-acetyl-L-citrulline

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cystathionine

D-alanine

D-aspartate

D-proline

β-alanine

acetate

(R)-pantoate

orotate

oleate

leukotriene-E4

leukotriene-D4

(R)-lactate

(R)-glycerate

propanoate

2-oxoglutarate

pyruvate

2-oxobutanoate

glyoxylate

3-phenyl-2-oxopropanoate

chorismate

(3E)-2-oxohex-3-enedioate

fumarate

succinate

maleate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

pyrazinamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phlorisovalerophenone

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

(2E,6E)-farnesyl diphosphate

geranyl diphosphate

deoxyhumulone

4-prenylphlorisovalerophenone

deoxycohumulone

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

all-trans-heptaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-nonaprenyl diphosphate

geranylgeranyl diphosphate

unsaturated CDP-archaeol

saturated CDP-archaeol

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

unsaturated archaetidylethanolamine

unsaturated archaetidylserine

saturated archaetidylethanolamine

saturated archaetidylserine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-(β-D ribofuranosyl)nicotinamide

ADP-D-ribose

ADP ribose 1''-phosphate

ADP ribose 1'',2''-cyclic phosphate

GDP-α-D-mannose

dTDP-α-D-glucose

UDP-α-D-glucose

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

L-fuculose 1-phosphate

α-D-mannose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

D-ribulose-1,5-bisphosphate

β-D-fructofuranose

α-D-galactopyranose

D-glyceraldehyde

keto-D-fructose

glycerol

maltopentaose

maltohexaose

maltotriose

maltoheptaose

maltotetraose

myo-inositol

1D-myo-inositol 3-monophosphate

ethanol

methylglyoxal

(S)-lactaldehyde

acetaldehyde

4-hydroxybenzoate

tyramine

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

adenine

guanine

AMP

IMP

GMP

XMP

ATP

GTP

ITP

GDP

ADP

IDP

dGDP

dADP

dIDP

dATP

dGTP

dITP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

6-carboxy-5,6,7,8-tetrahydropterin

tetrahydromethanopterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

molybdopterin adenine dinucleotide

molybdopterin

7,8-dihydroneopterin 3'-triphosphate

cyclic pyranopterin phosphate

5,10-methylene-tetrahydromethanopterin

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

reduced riboflavin

FMNH₂

FMN

riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

thymine

CTP

UTP

dUTP

dCTP

dCDP

dCMP

UDP

CDP

dTTP

dUDP

dTMP

dUMP

dTDP

UMP

CMP

cytidine

uridine

2'-deoxyuridine

thymidine

2'-deoxycytidine

adenosylcobalamin

coenzyme A

(R)-lipoate

oxidized coenzyme F₄₂₀-2

adenylo-succinate

5'-deoxyadenosine

cyclic-AMP

β-nicotinamide D-ribonucleotide

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

(S)-NADHX

(R)-NADHX

nicotinate

cob(I)alamin

acetyl-CoA

2-methylacetoacetyl-CoA

isobutanoyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

malonyl-CoA

(2R)-ethylmalonyl-CoA

(2S)-ethylmalonyl-CoA

3'-dephospho-CoA

CoA-disulfide

(S)-3-hydroxy-3-methylglutaryl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

propanoyl-CoA

crotonyl-CoA

(R)-methylmalonyl-CoA

(S)-methylmalonyl-CoA

3-sulfopyruvate

L-cysteate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

agmatine

spermidine

dehydrospermidine

putrescine

2-aminoprop-2-enoate

2-iminopropanoate

glycerophosphoserine

glycerophosphoglycerol

sn-glycero-3-phosphoethanolamine

hydrogencarbonate

molybdate

chloride

phosphate

diphosphate

triphosphate

H⁺

ammonium

2-chloroacetate

preQ₀

ω-saturated C55 dolichol phosphate

3-phospho-D-glyceroyl-phosphate

2,3-diphospho-D-glycerate

2-O-(α-D-mannosyl)-3-phospho-D-glycerate

2-O-(α-D-mannosyl)-D-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

2-iminosuccinate

oxygen

hydrogen sulfide

S⁰

protoporphyrinogen IX

protoporphyrin IX

adenosylcobyrate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

adenosylcobinamide

cob(I)inamide

cob(II)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

ethylphosphate