an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

H₂O

oxaloacetate

(R)-4'-phosphopantothenate

(R)-pantothenate

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

8-amino-7-oxononanoate

CO₂

pimeloyl-CoA

L-canavanine

canavaninosuccinate

L-arginino-succinate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

O-ureido-L-homoserine

4-amino-4-deoxychorismate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

quinolinate

β-nicotinate D-ribonucleotide

(S)-dihydroorotate

3-phosphooxypyruvate

urea

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

histidinol

histidinal

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

O-acetyl-L-serine

5-enolpyruvoyl-shikimate 3-phosphate

α-D-glucosamine 1-phosphate

4'-phosphopantetheine

DNA without lesion

acetoacetate

4-fumaryl-acetoacetate

phosphoenolpyruvate

4-imidazolone-5-propanoate

acetyl phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

hydrogen peroxide

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

carbamoyl phosphate

ethanolamine

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

L-selenocystathionine

carbon monoxide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-iminoacetate

(S)-ureidoglycolate

glycolate

shikimate 3-phosphate

shikimate

citrate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

carboxyphosphate

adenosine 5'-phosphosulfate

7-carboxy-7-deazaguanine

β-D-ribosylnicotinate

3-deoxy-D-manno-octulosonate 8-phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

coproporphyrinogen III

2-dehydropantoate

2-protocatechuoylphloroglucinolcarboxylate

prephenate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

isochorismate

1,4-dihydroxy-2-naphthoate

(R)-mandelate

(S)-mandelate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

formamide

3-deoxy-α-D-manno-2-octulosonate

3-dehydroshikimate

xanthine

prenyl diphosphate

(R)-4'-phosphopantothenoyl-L-cysteine

oxalosuccinate

N-acetyl-D-muramate 6-phosphate

urocanate

carbonic acid

glycerone phosphate

3-hydroxyanthranilate

anthranilate

lipid IV_A

lipid A disaccharide (E. coli)

orotidine 5'-phosphate

N-(5-phosphoribosyl)-anthranilate

isopentenyl diphosphate

(4Z)-2-oxohept-4-enedioate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

4-aminobutanoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

lipid X

5-guanidino-2-oxopentanoate

2,5-dioxopentanoate

creatinine

nicotinate adenine dinucleotide

4-oxoglutaramate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

1-piperideine 6-carboxylate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

aminoacetone

1,2-dihydro-β-NADP

enol-phenylpyruvate

ammonia

bisorganyltrisulfane

(R)-5-phosphomevalonate

(R)-mevalonate

(S)-2-amino-6-oxohexanoate

N-Formyl-L-kynurenine

(2-hydroxyphenyl)acetate

homogentisate

4-maleyl-acetoacetate

(R)-mevalonate diphosphate

2-amino-3-carboxymuconate-6-semialdehyde

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

4-phosphooxy-L-threonine

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

porphobilinogen

preuroporphyrinogen

cis,cis-muconate

(+)-muconolactone

muconolactone

glutathione disulfide

hydrogen selenide

glutathioselenol

selenodiglutathione

N-succinyl-L,L-2,6-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-kynurenine

L-α-amino-ε-keto-pimelate

L-citrulline

L-glutamate

L-glutamine

L-aspartate

L-phenylalanine

L-alanine

L-arginine

L-proline

L-lysine

L-threonine

L-histidine

L-serine

glycine

L-asparagine

L-leucine

L-methionine

L-valine

L-tryptophan

L-isoleucine

L-tyrosine

S-adenosyl-L-methionine

L-ornithine

L-canaline

L-homocysteine

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

1-aminocyclopropane-1-carboxylate

O-succinyl-L-homoserine

L-homoserine

meso-diaminopimelate

seleno-L-homocysteine

L-aspartyl-4-phosphate

iminoarginine

L-saccharopine

L-2-amino-3-oxobutanoate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

3-hydroxy-L-kynurenine

cis-4-hydroxy-D-proline

formyl-L-isoglutamine

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-glutamate

sarcosine

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cystathionine

L,L-diaminopimelate

L-isoglutamine

D-alanine

D-arginine

D-glutamate

creatine

β-alanine

protocatechuate

4-aminobenzoate

acetate

5-chloro-5-deoxy-D-ribonate

orotate

(R)-pantoate

(S)-1-pyrroline-5-carboxylate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

4-hydroxybutanoate

(R)-lactate

(R)-glycerate

pyruvate

formate

2-oxoglutarate

5-chloro-4-hydroxy-2-oxopentanoate

2-oxobutanoate

glyoxylate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

3-oxoadipate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

chorismate

fumarate

succinate

(S)-malate

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

α-Kdo-(2→6)-lipid IV_A

trans,octacis-decaprenyl phosphate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(β-D ribofuranosyl)nicotinamide

1-O-acetyl-α-maltose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

GDP-α-D-mannose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-α-D-galacturonate

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

CMP-3-deoxy-β-D-manno-octulosonate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

α-D-galactopyranose

β-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

glycolaldehyde

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-β-neuraminate

glycerol

sucrose

α,α-trehalose

stachyose

raffinose

ethanol

methylglyoxal

acetaldehyde

formaldehyde

caldariellaquinone

diacetyl

urate

4-hydroxybenzoate

myricetin

(+)-taxifolin

quercetin

kaempferol

(+)-dihydromyricetin

(+)-dihydrokaempferol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

demethylmenaquinol-8

menaquinol-8

ubiquinol-8

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

adenine

guanine

AMP

GMP

XMP

IMP

ATP

ITP

GTP

ADP

IDP

GDP

dADP

dIDP

dGDP

dATP

dITP

dGTP

dGMP

dAMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

6-carboxy-5,6,7,8-tetrahydropterin

tetrahydromethanopterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

(6R)-4a-hydroxy-tetrahydrobiopterin

(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin

7,8-dihydroneopterin 3'-triphosphate

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

cytosine

preQ₁

isoguanine

N¹-methyladenine

N3-methylcytosine

N¹-ethyladenine

dTTP

UTP

UDP

dCTP

dCDP

CTP

CDP

dUTP

dUDP

dTDP

dCMP

dUMP

dTMP

CMP

UMP

cytidine

uridine

2'-deoxyuridine

2'-deoxycytidine

thymidine

cob(I)alamin

adenosylcobalamin

sirohydrochlorin

precorrin-1

precorrin-2

coenzyme A

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

8-oxo-GTP

8-oxo-dGTP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

2-hydroxy-dATP

5-hydroxy-CMP

5-hydroxy-CTP

NADP⁺

NAD⁺

NADPH

NADH

5'-deoxy-5'-fluoroadenosine

(S)-NADHX

(R)-NADHX

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

7-oxolithocholate

chenodeoxycholate

cholate

succinyl-CoA

acetyl-CoA

3-methylglutaconyl-CoA

3-methylcrotonyl-CoA

malonyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

2-methylacetoacetyl-CoA

isovaleryl-CoA

3'-dephospho-CoA

4-hydroxybutanoyl-CoA

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

propanoyl-CoA

18-hydroxylinoleoyl-CoA

(S)-malyl-CoA

(R)-methylmalonyl-CoA

S-(hydroxymethyl)glutathione

glutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

thiocyanate

methanethiol

S-sulfanylglutathione

agmatine

spermidine

dehydrospermidine

putrescine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

superoxide

hydroxyl radical

sulfate

hydrogencarbonate

sulfite

thiosulfate

hydrogensulfite

selenate

selenite

OH^-

chloride

phosphonate

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

Cu²⁺

H⁺

ammonium

2-chloroacetate

2-iminobutanoate

2-iminosuccinate

oxygen

hydrogen sulfide

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

siroheme

protoheme

hydrogen cyanide

ethylphosphate

DNA with lesion

preQ₀

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

ω-saturated C55 dolichol phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)