ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C435

bisorganyltrisulfane

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C14152

pyruvic oxime

C13702

1-piperideine 6-carboxylate

C9431

1,2-dihydro-β-NADP

C12274

enol-phenylpyruvate

C1271

4-oxoglutaramate

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C1553

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

C3253

2,5-dioxopentanoate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C12029

S-ribosyl-L-homocysteine

C12324

autoinducer 2

C15156

dialurate

C4690

selenodiglutathione

C4688

glutathioselenol

C13854

hydrogen selenide

C14144

1,3-propanediol

C4674

glutathione disulfide

C15181

(S)-5-amino-3-oxohexanoate

C623

(3S,5S)-3,5-diaminohexanoate

C12492

1,6-anhydro-N-acetyl-β-muramate

C13928

urea-1-carboxylate

C13786

(2S)-2-isopropyl-3-oxosuccinate

C506

3-ethylmalate

C3259

2-oxovalerate

C949

lipid X

C10794

lipid A disaccharide (E. coli)

C6099

lipid IVA

C3684

3-deoxy-α-D-manno-2-octulosonate

C12074

3-deoxy-D-manno-octulosonate 8-phosphate

C13627

DNA without lesion

C527

digallate

C14907

gallate

C1024

aminoacetone

C11604

thiamine diphosphate

C352

2-iminoacetate

C927

carbon monoxide

C12848

N5-carboxyaminoimidazole ribonucleotide

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C1184

5-phospho-β-D-ribosylamine

C8366

(indol-3-yl)acetamide

C1098

acrylamide

C11756

propionamide

C941

butyramide

C12178

histidinal

C12125

imidazole acetol-phosphate

C12390

D-erythro-imidazole-glycerol-phosphate

C12133

3-hydroxypropanal

C996

adenosine 5'-phosphosulfate

C192

adenosine 5'-phosphoselenate

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C12325

1,4-dihydroxy-2-naphthoate

C12409

creatinine

C13197

2-methyl-1,4-benzoquinone

C13196

methyl-1,4-benzoquinol

C12394

6-phospho D-glucono-1,5-lactone

C3656

D-gluconate 6-phosphate

C939

butanoyl phosphate

C12342

diethylphosphate

C12340

diethylthiophosphate

C13552

dimethylthiophosphate

C191

L-selenocystathionine

C12048

γ-L-glutamyl 5-phosphate

C9422

nicotinate adenine dinucleotide

C1002

anthranilate

C11946

N-(5-phosphoribosyl)-anthranilate

C11760

prephenate

C11930

N-acetylglutamyl-phosphate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C12056

L-arginino-succinate

C932

canavaninosuccinate

C12218

α-D-glucosamine 1-phosphate

C12254

ethanolamine

C1321

4-aminobutanoate

C11639

succinate semialdehyde

C933

L-canavanine

C7865

urea

C12392

D-glycero-β-D-manno-heptose 1,7-bisphosphate

C12393

D-glycero-β-D-manno-heptose 1-phosphate

C1285

4-imidazolone-5-propanoate

C11557

urocanate

C14218

L-β-lysine

C11832

orotidine 5'-phosphate

C14924

carboxyphosphate

C12352

(S)-dihydroorotate

C11780

D-phenylhydantoin

C5862

N-carbamoyl-D-phenylglycine

C2191

carbamoyl phosphate

C6614

O-ureido-L-homoserine

C8333

(indol-3-yl)pyruvate

C11693

(indol-3 yl)acetyl-CoA

C12044

L-histidinol phosphate

C12176

histidinol

C11711

(R)-1-amino-2-propanol O-2-phosphate

C3888

7-carboxy-7-deazaguanine

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C11652

shikimate 3-phosphate

C12369

3-dehydroquinate

C232

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

C2346

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

C1112

ManNAc-GlcNAc-PP-undecaprenol

C14053

S-methyl-5-thio-α-D-ribose 1-phosphate

C638

5-(methylsulfanyl)-ribulose 1-phosphate

C13650

deethylsimazine

C13649

N-ethylammeline

C14181

2-maleylacetate

C13851

hydrogenobyrinate

C13850

hydrogenobyrinate a,c-diamide

C1538

2-C-methyl-D-erythritol 4-phosphate

C12158

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

C11737

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C3850

5-amino-6-(D-ribitylamino)uracil

C11802

4'-phosphopantetheine

C1108

acetyl phosphate

C11754

propanoyl phosphate

C12214

(S)-4-amino-5-oxopentanoate

C1231

5-aminolevulinate

C11767

porphobilinogen

C12139

preuroporphyrinogen

C1519

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

C13630

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

C13546

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C11634

tartronate semialdehyde

C11635

L-tartrate

C12230

formamide

C5558

S-methyl-5'-thioinosine

C12031

S-Inosyl-L-homocysteine

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C1528

2-dehydropantoate

C12315

5,6-dimethylbenzimidazole

C1078

(S)-2-amino-6-oxohexanoate

C13257

carboxynorspermidine

C11849

norspermidine

C1265

4-phosphooxy-L-threonine

C1631

3-amino-1-hydroxyacetone 1-phosphate

C1548

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

C14436

pimelate

C13950

pimeloyl-CoA

C12355

dethiobiotin

C1353

3-phosphooxypyruvate

C11653

shikimate

C1431

3-dehydroshikimate

C11800

(R)-pantothenate

C1268

(R)-4'-phosphopantothenate

C11995

(L-seryl)adenylate

C13895

(2,3-dihydroxybenzoyl)adenylate

C12096

isochorismate

C12337

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C1449

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

C1102

O-acetyl-L-serine

C6597

3-ureidopropanoate

C11988

mesaconate

C891

citrate

C13225

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C11606

thiamine phosphate

C6349

3-oxopropanoate

C11836

hydroxypyruvate

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1196

S-methyl-5'-thioadenosine

C1198

5-dehydro-4-deoxy-D-glucarate

C14145

3-deoxy-D-glycero-2,5-hexodiulosonate

C12375

2-deoxygluconate

C12374

3-dehydro-2-deoxy-D-gluconate

C11539

xanthine

C1036

α-ribazole 5'-phosphate

C1038

α-ribazole

C1325

4-amino-4-deoxychorismate

C1010

ammonia

C12146

hydroxylamine

C12494

N-acetyl-D-muramate 6-phosphate

C11932

N-acetyl-D-galactosamine 6-phosphate

C15282

D-galactosamine-6-phosphate

C6359

(S)-2-acetolactate

C6369

(S)-2-aceto-2-hydroxybutanoate

C873

coproporphyrinogen III

C13635

β-D-ribosylnicotinate

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C11483

glycolate

C12164

H2

C1186

5-oxo-L-proline

C12162

hydrogen peroxide

C11857

β-nicotinate D-ribonucleotide

C11715

quinolinate

C8210

5-dehydro-2-deoxy-D-gluconate

C8191

5-dehydro-2-deoxy-D-gluconate 6-phosphate

C3344

2-dehydro-3-deoxy-D-gluconate

C1503

2-dehydro-3-deoxy-D-gluconate 6-phosphate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C1305

4-fumaryl-acetoacetate

C3417

(S)-3-methyl-2-oxopentanoate

C3262

3-methyl-2-oxobutanoate

C3319

4-methyl-2-oxopentanoate

C12016

(lipoyl)adenylate

C10349

glycerone phosphate

C11479

phosphoenolpyruvate

C12192

carbonic acid

C2580

methylsalicylate

C15056

salicyl alcohol

C6361

acetoacetate

C928

CO2

C6444

oxaloacetate

C1438

(2S)-2-isopropylmalate

C13417

2-isopropylmaleate

C11543

H2O

C1530

(2R,3S)-3-isopropylmalate

C1130

8-amino-7-oxononanoate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C12350

7,8-diaminopelargonate

C10799

DNA with lesion

C6043

4-methylphenol

C12247

L-homocysteine

C11480

phenylacetate

C803

ethylphosphate

C3865

phosphonoacetaldehyde

C12116

(2-aminoethyl)phosphonate

C13422

hydrogen cyanide

C2255

N2

C5221

adenosylcobalamin

C9874

cob(I)alamin

C9865

Mg-protoporphyrin

C9845

cobalt-sirohydrochlorin

C9799

cobalt-precorrin-2

C9830

adenosylcobinamide-GDP

C9800

adenosylcobyrate

C9855

adenosyl-cobinamide phosphate

C9847

cobalt-precorrin-4

C9871

cobalt-precorrin-5A

C9813

cobalt-precorrin-5B

C9818

cobalt-precorrin-6A

C9811

cob(II)yrinate c-monoamide

C9828

cob(II)yrinate a,c-diamide

C9861

cobyrinate

C9823

cob(I)yrinate a,c-diamide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9869

cob(I)inamide

C9807

adenosylcobinamide

C1218

adenosylcobalamin 5'-phosphate

C6624

protoheme

C7676

protoporphyrin IX

C7662

uroporphyrinogen-I

C7672

coproporphyrinogen I

C7658

uroporphyrinogen-III

C7666

protoporphyrinogen IX

C7632

siroheme

C7118

hydrogen sulfide

C7121

oxygen

C6596

2-iminosuccinate

C6708

2-iminopropanoate

C6599

2-iminobutanoate

C11281

2-chloroacetate

C8419

sn-glycerol 3-phosphate

C11476

(R)-glycerate

C6437

3-phospho-D-glyceroyl-phosphate

C6438

3-phospho-D-glycerate

C6425

2-phospho-D-glycerate

C2151

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C2017

α-D-glucosamine 6-phosphate

C6744

CMP-N-acetyl-β-neuraminate

C6741

(S)-methylmalonate-semialdehyde

C12545

ethene

C7306

5'-deoxy-5'-fluoroadenosine

C7314

5-fluoro-5-deoxy-D-ribose 1-phosphate

C5546

5'-chloro-5'-deoxyadenosine

C11254

5-chloro-5-deoxyribose 1-phosphate

C11510

5-chloro-5-deoxy-D-ribonate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C12856

parathion

C12858

paraoxon

C12862

4-nitrophenol

C10049

FMNH2

C10052

FMN

C10053

FAD

C5392

(S)-NADHX

C5394

(R)-NADHX

C1869

caldariellaquinol

C5535

ubiquinol-7

C5563

ubiquinol-10

C5551

ubiquinol-9

C5543

ubiquinol-8

C1672

menaquinol-7

C1680

menaquinol-8

C1860

demethylmenaquinol-7

C1863

demethylmenaquinol-8

C1865

3-demethylubiquinol-7

C1866

3-demethylubiquinol-10

C1868

3-demethylubiquinol-9

C1867

3-demethylubiquinol-8

C10048

caldariellaquinone

C14497

NADPH

C14500

NADH

C4018

NADP+

C4020

NAD+

C8965

hydroxyl radical

C8958

superoxide

C9077

(2E,6E)-farnesyl diphosphate

C2774

pristanate

C4960

N-acetyl-β-neuraminate

C7864

Fe3+

C4320

H+

C4328

ammonium

C11009

Mg2+

C11006

Co2+

C11023

Fe2+

C7014

sulfate

C7025

OH-

C7016

sulfite

C7017

selenite

C7020

selenate

C7036

hydrogencarbonate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C7006

chloride

C4606

S-(hydroxymethyl)glutathione

C3998

methanethiol

C4678

glutathione

C4644

S-sulfanylglutathione

C5744

5-(2-hydroxyethyl)-4-methylthiazole

C5753

4-methyl-5-(2-phosphooxyethyl)thiazole

C5750

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

C5759

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

C12587

L-cysteate

C12637

3-sulfopyruvate

C2209

(2R)-3-sulfolactate

C7994

(2R)-phospho-3-sulfolactate

C4580

(R)-S-lactoylglutathione

C6524

2-aminoprop-2-enoate

C6526

(2Z)-2-aminobut-2-enoate

C3576

cadaverine

C3548

putrescine

C3574

spermidine

C2562

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

C2576

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

C1328

L-cysteinylglycine

C1434

D-alanyl-D-alanine

C6530

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C7060

3-hexaprenyl-4-hydroxybenzoate

C6934

4-hydroxybenzoate

C3093

urate

C6908

salicyl-6-hydroxy-2-cyclohexene-on-oyl

C7033

6-hydroxy-2-cyclohexen-one-carboxylate

C3477

amino-parathion

C3475

methyl parathion

C12836

phenol

C12814

4-aminophenol

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C11421

protocatechuate

C11409

2,3-dihydroxybenzoate

C2727

enterobactin

C11429

salicylate

C8974

4-aminobenzoate

C13388

3-cyanopyridine

C13382

acrylonitrile

C13408

propionitrile

C13366

(indole-3-yl)acetonitrile

C13354

preQ0

C13342

n-butyronitrile

C10611

(R)-lipoate

C10614

coenzyme A

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C10597

7,8-dihydrofolate monoglutamate

C14624

5,10-methylene-tetrahydromethanopterin

C14603

tetrahydromethanopterin

C10994

thiamine

C10996

nicotinamide

C10982

nicotinate

C10988

riboflavin

C4200

pyridoxal

C4208

pyridoxine

C4216

pyridoxamine

C4188

pyridoxamine 5'-phosphate

C4214

pyridoxine 5'-phosphate

C4210

pyridoxal 5'-phosphate

C10966

all-trans-retinol

C9098

methyl (indol-3-yl)acetate

C9096

(indol-3-yl)acetate

C10791

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

C10102

cis-dienelactone

C10100

trans-dienelactone

C3727

all-trans-retinyl palmitate

C2242

(S)-3-aminobutanoyl-CoA

C5156

(2E,4E)-tetradeca-2,4-dienoyl-CoA

C5154

(3E)-tetradec-3-enoyl-CoA

C5128

2-trans, 4-trans-undecadienoyl-CoA

C5141

2-trans, 4-cis-undecadienoyl-CoA

C5139

(3E)-undec-3-enoyl-CoA

C4915

α-linolenoyl-CoA

C5056

linoleoyl-CoA

C5014

phenylacetyl-CoA

C4922

isobutanoyl-CoA

C4937

3'-dephospho-CoA

C5302

4-hydroxybutanoyl-CoA

C5316

(R)-2-hydroxyglutaryl-CoA

C4927

(E)-glutaconyl-CoA

C5314

2-methylacetoacetyl-CoA

C4901

succinyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C5298

acetyl-CoA

C4913

malonyl-CoA

C5920

(R)-methylmalonyl-CoA

C5919

(S)-methylmalonyl-CoA

C1337

crotonyl-CoA

C11400

phytenoyl-CoA

C4309

(2E)-dec-2-enoyl-CoA

C4300

trans-Δ2, cis-Δ4-decadienoyl-CoA

C3150

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

C5635

oleoyl-CoA

C11187

7-hydroxylauroyl-CoA

C11195

18-hydroxylinoleoyl-CoA

C491

18-hydroxyoleoyl-CoA

C480

18-hydroxystearoyl-CoA

C6566

16-hydroxypalmitoyl-CoA

C10775

(S)-3-hydroxybutanoyl-CoA

C10774

(3R)-3-hydroxybutanoyl-CoA

C7168

(Z)-15-tetracosenoyl-CoA

C1175

butanoyl-CoA

C1177

propanoyl-CoA

C14697

decanoyl-CoA

C14677

octanoyl-CoA

C14674

lauroyl-CoA

C2873

pristanoyl-CoA

C5885

stearoyl-CoA

C5892

palmitoyl-CoA

C5637

cis-vaccenoyl-CoA

C5890

myristoyl-CoA

C5651

palmitoleoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C8014

phosphoribulosylformimino-AICAR-phosphate

C8033

5-amino-4-imidazolecarboxyamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C3316

(3E)-2-oxohex-3-enedioate

C8950

chorismate

C6442

succinate

C6443

fumarate

C5596

L-aspartate

C2802

(S)-malate

C8923

α,ω-9Z-octadecenedioate

C8919

D-glucarate

C8928

D-galactarate

C5463

3-(carbamoylamino)-2-methylpropanoate

C8536

3-carboxy-cis,cis-muconate

C8549

(1R,2S)-homoisocitrate

C8555

cis-homoaconitate

C8538

(2R)-homocitrate

C6371

3-oxoadipate

C3308

pyruvate

C11517

acetate

C3421

formate

C3420

propanoate

C6185

(R)-lactate

C3418

butanoate

C3412

decanoate

C3415

laurate

C3207

7-hydroxylaurate

C3409

octanoate

C951

4-hydroxybutanoate

C538

18-hydroxyoleate

C550

18-hydroxystearate

C553

16-hydroxypalmitate

C13266

(15Z)-tetracosenoate

C10590

α-linolenate

C6379

linoleate

C3387

stearate

C13210

oleate

C3383

palmitate

C13260

phytenate

C3542

1-palmitoyl-2-cis-vaccenoyl phosphatidate

C3119

1,2-dicis-vaccenoyl-phosphatidate

C3512

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

C3514

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

C3510

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

C11503

5-deoxy-D-glucuronate

C11485

D-gluconate

C11481

orotate

C11482

(R)-pantoate

C11487

D-mannonate

C4985

(S)-1-pyrroline-5-carboxylate

C3743

4-deoxy-L-threo-hex-4-enopyranuronate

C2137

D-tagaturonate

C2021

aldehydo-D-galacturonate

C5032

carbamate

C8795

D-serine

C5579

L-serine

C11443

creatine

C11435

(R)-β-lysine

C11441

β-alanine

C11434

(R)-3-amino-2-methylpropanoate

C5581

L-proline

C12067

glycine

C5597

L-alanine

C5609

L-glutamine

C5588

L-leucine

C8797

D-glutamate

C5607

L-glutamate

C5605

L-histidine

C5642

L-arginine

C5584

L-lysine

C5573

L-tyrosine

C5575

L-tryptophan

C2469

L-phenylalanine

C8799

D-alanine

C8805

D-aspartate

C2449

S-sulfanyl-L-cysteine

C12063

seleno-L-homocysteine

C12073

L-aspartyl-4-phosphate

C12065

L-saccharopine

C12201

L-2-amino-3-oxobutanoate

C3652

L-threonine 3-O-phosphate

C3402

3-phospho-L-serine

C3628

sarcosine

C6532

(2S, 3S)-3-methylaspartate

C13322

N-carbamoyl-L-aspartate

C13320

N-carbamoylglycine

C5476

formyl-L-isoglutamine

C5466

N-formimino-L-glutamate

C15000

N-acetyl-L-ornithine

C14973

N-acetyl-L-glutamate

C10821

trans-4-hydroxy-L-proline

C11955

O-acetyl-L-homoserine

C5583

L-methionine

C5601

L-isoglutamine

C5612

L-cysteine

C5595

L-cystathionine

C5643

L-asparagine

C12231

L-ornithine

C5580

L,L-diaminopimelate

C5577

L-threonine

C5603

L-isoleucine

C5571

L-valine

C12303

L-citrulline

C12227

O-succinyl-L-homoserine

C12255

L-cystine

C12237

L-canaline

C12229

O-phospho-L-homoserine

C12245

L-homoserine

C12239

L-aspartate 4-semialdehyde

C12233

L-glutamate-5-semialdehyde

C12261

hypoglycin A

C12203

S-adenosyl-L-homocysteine

C15292

S-adenosyl-L-methionine

C5585

meso-diaminopimelate

C3345

3-phenyl-2-oxopropanoate

C3086

4-(methylsulfanyl)-2-oxobutanoate

C3351

glyoxylate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C11520

hypoglycin B

C11222

sn-glycero-3-phosphoethanolamine

C11220

glycerophosphoglycerol

C11219

glycerophosphoserine

C3731

glycerol

C6569

D-sorbitol

C6571

L-iditol

C3673

D-mannitol 1-phosphate

C3447

propan-1-ol

C3449

butan-1-ol

C3450

ethanol

C3448

methanol

C11919

ethylene glycol

C2023

(S)-propane-1,2-diol

C2022

(R)-propane-1,2-diol

C10534

1D-chiro-inositol

C10535

scyllo-inositol

C10527

myo-inositol

C10525

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

C10522

scyllo-inosose

C10519

1-keto-D-chiro-inositol

C8321

geranyl diphosphate

C9304

trans,octacis-decaprenyl phosphate

C9075

mono-trans,octa-cis-decaprenyl diphosphate

C8322

di-trans,octa-cis-undecaprenyl phosphate

C5378

geranylgeranyl diphosphate

C5383

all-trans-octaprenyl diphosphate

C15301

all-trans-nonaprenyl diphosphate

C5368

all-trans-hexaprenyl diphosphate

C5364

all-trans-decaprenyl diphosphate

C5382

all-trans-heptaprenyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C4553

3-octaprenyl-4-hydroxybenzoate

C4545

3-nonaprenyl-4-hydroxybenzoate

C4550

3-decaprenyl-4-hydroxybenzoate

C4549

3-heptaprenyl-4-hydroxybenzoate

C10024

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

C6241

1-oleoyl-sn-glycerol 3-phosphate

C6239

1-myristoyl-sn-glycerol 3-phosphate

C6240

1-palmitoyl-sn-glycerol 3-phosphate

C6242

1-cis-vaccenoyl-sn-glycerol-3-phosphate

C3826

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

C3822

1-palmitoyl-2-myristoyl phosphatidate

C3816

1,2-dimyristoyl-sn-glycerol 3-phosphate

C3117

dioleoyl phosphatidate

C10226

α-Kdo-(2→6)-lipid IVA

C4819

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

C4817

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

C4086

1-(β-D ribofuranosyl)nicotinamide

C4068

5-dehydro-4-deoxy-D-glucuronate

C10688

maltotriose

C10689

maltotetraose

C10692

maltoheptaose

C10691

maltohexaose

C10690

maltopentaose

C8835

β-D-fructofuranose

C6134

α-L-rhamnopyranose

C6133

β-L-rhamnopyranose

C5458

keto-L-sorbose

C2012

keto-D-fructose

C2143

D-xylulose

C2144

D-ribulose

C7173

L-ribulose

C2065

aldehydo-D-ribose

C2061

α-D-ribofuranose

C2062

β-D-ribofuranose

C2063

β-D-ribopyranose

C9477

N-acetyl-α-D-muramoyl-L-alanine(1-)

C15288

N-acetylmuramate

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C5286

N-acetyl-β-D-glucosamine

C14474

N-acetyl-α-D-mannosamine

C9494

D-glyceraldehyde

C2858

glycolaldehyde

C7087

α-D-glucopyranose

C7085

β-D-glucopyranose

C2108

β-D-galactopyranose

C2109

α-D-galactopyranose

C2006

β-D-allopyranose

C3691

β-D-allofuranose

C7089

keto-L-rhamnulose

C11619

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

C10362

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

C10372

a peptidoglycan dimer (S. aureus)

C10374

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

C10381

a peptidoglycan dimer (mycobacteria)

C10370

a peptidoglycan dimer (E. faecium, tetrapeptide)

C10379

a peptidoglycan dimer (E. faeciums)

C14595

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

C13226

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

C13222

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

C3124

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

C3135

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

C3131

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C3126

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanyl-D-alanine

C3132

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)5-D-alanyl-D-alanine

C3120

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3130

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

C3127

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

C5529

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

C3137

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C3138

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

C8305

CMP-3-deoxy-β-D-manno-octulosonate

C7780

UDP-α-D-glucose

C10263

ADP-α-D-glucose

C1939

dTDP-α-D-glucose

C8422

CDP-α-D-glucose

C7814

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

C7776

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

C7790

UDP-N-acetyl-α-D-mannosamine

C7824

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

C7808

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

C7822

UDP-N-acetyl-α-D-muramate

C7742

UDP-N-acetyl-α-D-muramoyl-L-alanine

C7734

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

C7722

UDP-α-D-glucuronate

C8666

UDP-α-D-galactose

C7782

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

C5848

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

C5094

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

C5090

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

C5150

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

C7444

UDP-N-acetyl-α-D-glucosamine

C1930

dTDP-β-L-rhamnose

C1896

dTDP-4-dehydro-β-L-rhamnose

C8423

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C8433

CDP-4-dehydro-6-deoxy-α-D-glucose

C10343

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

C1009

GDP-α-D-mannose

C1043

GDP-4-dehydro-α-D-rhamnose

C7189

GDP-β-L-fucose

C5615

D-glyceraldehyde 3-phosphate

C8811

α-D-glucopyranose 1-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C10340

D-erythrose 4-phosphate

C15289

D-sedoheptulose 7-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10324

D-tagatofuranose 1,6-bisphosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C8708

1-deoxy-D-xylulose 5-phosphate

C8704

D-xylulose 5-phosphate

C8699

D-arabinofuranose 5-phosphate

C10604

D-ribulose 5-phosphate

C10607

L-ribulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C6709

β-D-ribose 5-phosphate

C6711

α-D-ribose 5-phosphate

C2057

α-D-ribose-1-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8817

L-rhamnulose 1-phosphate

C8815

α-D-galactose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C3675

D-altronate

C2040

diacetyl

C2028

acetone

C6090

methylglyoxal

C3523

1-propanal

C3485

butan-1-al

C3483

formaldehyde

C3500

acetaldehyde

C6246

(S)-lactaldehyde

C6245

(R)-lactaldehyde

C2302

precorrin-3A

C2308

precorrin-6A

C2317

precorrin-6B

C2323

precorrin-7

C2297

precorrin-8x

C2311

precorrin-2

C2305

precorrin-1

C2314

precorrin-3B

C2320

precorrin-4

C1705

sirohydrochlorin

C2001

hydantoin

C8755

dCMP

C8739

uracil

C8720

dTDP

C8764

dTTP

C8752

dUDP

C8732

CDP

C8733

dCDP

C8770

dUMP

C8744

dTMP

C4012

5,6-dihydrouracil

C7801

5,6-dihydrothymine

C8714

UDP

C8772

dCTP

C8761

CTP

C8724

dUTP

C8760

UTP

C2245

CMP

C2241

UMP

C2702

cytidine

C2706

uridine

C2523

2'-deoxycytidine

C2519

thymidine

C2527

2'-deoxyuridine

C10601

thymine

C9454

adenine

C9455

guanine

C7785

hypoxanthine

C7649

isoguanine

C9540

preQ1

C15094

xanthosine

C15085

guanosine

C15088

adenosine

C15091

inosine

C7848

2'-deoxyguanosine

C7813

2'-deoxyadenosine

C7755

2'-deoxyinosine

C7759

ITP

C7844

ATP

C7745

GTP

C7817

IDP

C7757

ADP

C7795

GDP

C7827

GMP

C7741

IMP

C7811

XMP

C7809

AMP

C7749

dITP

C7783

dATP

C7751

dGTP

C7747

dIDP

C7823

dADP

C7807

dGDP

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C15044

reduced riboflavin

C12730

7,8-dihydroneopterin 3'-triphosphate

C12728

6-(hydroxymethyl)-7,8-dihydropterin

C12680

(7,8-dihydropterin-6-yl)methyl diphosphate

C12726

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

C12676

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

C10609

7,8-dihydropteroate

C5578

6-carboxy-5,6,7,8-tetrahydropterin

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C7655

8-oxo-GTP

C7647

8-oxo-dGTP

C10266

ppGpp

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C10267

pppGpp

C10288

adenylo-succinate

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C5552

5'-deoxyadenosine

C9419

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

C9420

two adjacent thymidines in DNA

C1817

cyclic di-3',5'-guanylate

C10290

5-hydroxy-CTP

C10284

2-hydroxy-dATP

C4243

β-nicotinamide D-ribonucleotide

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA