an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

acetyl phosphate

quinolinate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

DNA without lesion

3-oxopropanoate

4-aminobutanoate

succinate semialdehyde

ethanolamine

2-dehydropantoate

carbamoyl phosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

α-ribazole

α-ribazole 5'-phosphate

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

D-erythro-imidazole-glycerol-phosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(R)-4'-phosphopantothenoyl-L-cysteine

4'-phosphopantetheine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(S)-3-methyl-2-oxopentanoate

coenzyme B

CoB-CoM heterodisulfide

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-deoxy-α-ribose 1-phosphate

S-Inosyl-L-homocysteine

hexulose 6-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

H₂

hydrogen peroxide

2-phosphoglycolate

imidazole acetol-phosphate

N-acetyl-L-glutamate 5-semialdehyde

histidinal

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

L-histidinol phosphate

histidinol

oxaloacetate

thiamine diphosphate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

coproporphyrinogen III

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

acetoacetate

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

L-β-lysine

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

3-dehydroshikimate

phosphoenolpyruvate

5-enolpyruvoyl-shikimate 3-phosphate

prephenate

3-deoxy-D-arabino-heptulosonate 7-phosphate

3-dehydroquinate

glycerone phosphate

orotidine 5'-phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

glycolate

O-acetyl-L-serine

H₂O

nicotinate adenine dinucleotide

α-D-ribose 1,5-bisphosphate

shikimate

shikimate 3-phosphate

3-methyl-2-oxobutanoate

CO₂

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

S-ribosyl-L-homocysteine

autoinducer 2

oxalate

(R)-mevalonate diphosphate

sulfoethylcysteine

2-(sulfomethyl)thiazolidine-4-carboxylate

5-methylcytosine

N-acetylglutamyl-phosphate

anthranilate

5-amino-6-(D-ribitylamino)uracil

N⁵-carboxyaminoimidazole ribonucleotide

7-carboxy-7-deazaguanine

7,8-didemethyl-8-hydroxy-5-deazariboflavin

coenzyme F₃₉₀-A

N-(5-phosphoribosyl)-anthranilate

methanophenazine

dihydromethanophenazine

3-phosphooxypyruvate

(2S)-lactyl-2-diphospho-5'-guanosine

(R)-mevalonate

(R)-5-phosphomevalonate

5-(methylsulfanyl)-ribulose 1-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

carbon monoxide

(R)-1-amino-2-propanol O-2-phosphate

(S)-dihydroorotate

carboxyphosphate

carbonic acid

(R)-2,3-dihydroxy-3-methylpentanoate

preuroporphyrinogen

5-aminolevulinate

porphobilinogen

(S)-4-amino-5-oxopentanoate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

S-adenosyl 3-(methylsulfanyl)propylamine

isopentenyl diphosphate

4-prenylphlorisobutyrophenone

prenyl diphosphate

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

L-canavanine

DNA with lesion

L-homocysteine

phenylacetate

N₂

Mg-protoporphyrin

cobalt-precorrin-5B

cobalt-precorrin-6A

cobalt-precorrin-4

cobalt-precorrin-5A

cobalt-precorrin-3

adenosylcobalamin

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

cobalt-sirohydrochlorin

cobalt-precorrin-2

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cob(III)yrinate a,c-diamide

adenosylcobyrate

cobalt-factor III

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

uroporphyrinogen-III

siroheme

oxygen

2-iminosuccinate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 3-phosphate

sn-glycerol 1-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ω-saturated C55 dolichol phosphate

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

(S)-citramalate

preQ₀

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

H⁺

ammonium

K⁺

Mg²⁺

Co²⁺

Mo²⁺

Zn²⁺

Fe²⁺

hydrogencarbonate

sulfite

molybdate

nitrate

phosphate

diphosphate

triphosphate

chloride

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

agmatine

cadaverine

dehydrospermidine

spermidine

putrescine

glycine betaine

tyramine

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

sulfoacetaldehyde

coenzyme M

phenylacetyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3'-dephospho-CoA

succinyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

isobutanoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

phytenoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

octanoyl-CoA

lauroyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

methane

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

nicotinate

riboflavin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methenyltetrahydromethanopterin

5-formyl-tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

N⁵-methyltetrahydromethanopterin

tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

FAD

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

adenylo-succinate

cyclic-AMP

dGDP

dIDP

dITP

IDP

ITP

dADP

hypoxanthine

1-(5-phospho-β-D-ribosyl)-AMP

GDP

dATP

dGTP

GTP

5'-deoxyadenosine

XMP

GMP

IMP

AMP

ATP

ADP

1-(5-phospho-β-D-ribosyl)-ATP

5-fluorocytosine

5-fluorouracil

(R)-NADPHX

(S)-NADPHX

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

dUTP

dCTP

dTTP

UTP

CTP

dUMP

dCMP

dTMP

CMP

UMP

dTDP

dUDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

GDP-α-D-mannose

GDP-α-D-mannuronate

cytosine

uracil

thymine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactose

UDP-α-D-glucuronate

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

methyl-CoM

coenzyme A

oxidized coenzyme F₄₂₀-0

oxidized coenzyme F₄₂₀-2

MoO₂-molybdopterin cofactor

guanylyl molybdenum cofactor

precorrin-8x

precorrin-2

precorrin-7

precorrin-6B

precorrin-6A

precorrin-5

precorrin-4

precorrin-3B

precorrin-3A

precorrin-1

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

6-carboxy-5,6,7,8-tetrahydropterin

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

diacetyl

acetone

methylglyoxal

acetaldehyde

formaldehyde

D-glyceraldehyde

methanol

ethanol

glycerol

myo-inositol

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

keto-D-fructose

β-D-fructofuranose

D-ribulose-1,5-bisphosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

D-ribulose 5-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

saturated CDP-archaeol

unsaturated CDP-archaeol

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

saturated archaetidylserine

saturated archaetidylethanolamine

unsaturated archaetidylserine

unsaturated archaetidylethanolamine

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

geranyl diphosphate

phytyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(3E)-2-oxohex-3-enedioate

chorismate

L-aspartate

succinate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

cis-homoaconitate

(2R)-homocitrate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

2-oxobutanoate

pyruvate

2-oxoglutarate

formate

acetate

(R)-lactate

(S)-lactate

octanoate

7-hydroxylaurate

laurate

decanoate

(15Z)-tetracosenoate

oleate

α-linolenate

linoleate

stearate

palmitate

phytenate

(R)-pantoate

carbamate

L-serine

L-threonine

glycine

L-glutamine

L-cysteine

L-tyrosine

L-histidine

L-arginine

L-lysine

L-glutamate

L-valine

L-alanine

L-leucine

L-phenylalanine

L-isoleucine

L-methionine

L-tryptophan

β-alanine

(R)-β-lysine

D-alanine

L-aspartyl-4-phosphate

L,L-diaminopimelate

L-ornithine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

L-threonine 3-O-phosphate

3-phospho-L-serine

N-acetyl-L-glutamate

L-citrulline

L-homoserine

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-canaline

meso-diaminopimelate

D-alanyl-D-alanine