an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(lipoyl)adenylate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

canavaninosuccinate

L-arginino-succinate

O-ureido-L-homoserine

α-D-galactosyl-diphosphoundecaprenol

(R)-pantothenate

(R)-4'-phosphopantothenate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

xanthine

acetyl phosphate

coproporphyrinogen III

(S)-dihydroorotate

O-acetyl-L-serine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

isopentenyl diphosphate

3-dehydroquinate

shikimate 3-phosphate

glycolate

(2R)-2-amino-4-oxopentanoate

nicotinate adenine dinucleotide

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine diphosphate

formate

prenyl diphosphate

prephenate

5-(methylsulfanyl)-ribulose 1-phosphate

shikimate

4'-phosphopantetheine

3-dehydroshikimate

α-ribazole

L-canavanine

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

aminoacetone

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

4-oxoglutaramate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

formamide

glutathione disulfide

D-erythro-imidazole-glycerol-phosphate

histidinal

autoinducer 2

2-amino-3-carboxymuconate-6-semialdehyde

carboxyphosphate

urea

(S)-ureidoglycolate

5-enolpyruvoyl-shikimate 3-phosphate

phosphoenolpyruvate

hydrogen peroxide

CO₂

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

5-phospho-β-D-ribosylamine

imidazole acetol-phosphate

L-histidinol phosphate

H₂O

N-succinyl-L,L-2,6-diaminopimelate

(3S,5S)-3,5-diaminohexanoate

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

α-D-glucosamine 1-phosphate

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

butanoyl phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

propanoyl phosphate

1,4-dihydroxy-2-naphthoate

2-dehydropantoate

glycerone phosphate

quinolinate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

H₂

isochorismate

S-ribosyl-L-homocysteine

3-deoxy-D-arabino-heptulosonate 7-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

N¹-(5-phospho-β-D-ribosyl)glycinamide

carbamoyl phosphate

orotidine 5'-phosphate

N,N-dimethyl-1,4-phenylenediamine

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol 4-phosphate

thiamine phosphate

DNA without lesion

histidinol

2-iminoacetate

(S)-5-amino-3-oxohexanoate

L-β-lysine

4-methyl-2-oxopentanoate

acetoacetate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

4-imidazolone-5-propanoate

mesaconate

citrate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

selenophosphate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

preuroporphyrinogen

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

β-nicotinate D-ribonucleotide

porphobilinogen

oxaloacetate

(R)-4'-phosphopantothenoyl-L-cysteine

S-Inosyl-L-homocysteine

(indol-3-yl)acetamide

urocanate

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

cobalt-precorrin-2

cobalt-precorrin-4

cobalt-factor III

cobalt-precorrin-7

cobalt-precorrin-8

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(I)alamin

Mg-protoporphyrin

adenosyl-cobinamide phosphate

adenosylcobinamide

adenosylcobalamin 5'-phosphate

adenosylcobalamin

adenosylcobyrate

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosyl-cob(III)yrinate a,c-diamide

cobalt-sirohydrochlorin

cobalt-precorrin-3

cobalt-precorrin-5A

protoheme

protoporphyrinogen IX

uroporphyrinogen-I

protoporphyrin IX

uroporphyrinogen-III

siroheme

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

3-phospho-D-glycerate

2-phospho-D-glycerate

4-dimethylaminophenylazobenzene

α-D-glucosamine 6-phosphate

preQ₀

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

Fe³⁺

ammonium

H⁺

K⁺

Mg²⁺

Zn²⁺

Cd²⁺

Hg²⁺

Co²⁺

Pb²⁺

Fe²⁺

hydrogencarbonate

OH^-

superoxide

nitrate

selenide

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

ferrichrome

aniline

2-aminoprop-2-enoate

putrescine

spermidine

cadaverine

glutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

3-sulfopyruvate

L-cysteate

(2R)-3-sulfolactate

(2R)-phospho-3-sulfolactate

succinyl-CoA

3'-dephospho-CoA

acetyl-CoA

CoA-disulfide

malonyl-CoA

2-methylacetoacetyl-CoA

(S)-3-aminobutanoyl-CoA

(R)-2-hydroxyglutaryl-CoA

(E)-glutaconyl-CoA

crotonyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(S)-3-hydroxybutanoyl-CoA

propanoyl-CoA

butanoyl-CoA

cis-vaccenoyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

riboflavin

nicotinate

thiamine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

FMN

FMNH₂

FAD

(S)-NADHX

(R)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

demethylmenaquinol-8

IMP

GMP

2'-deoxyguanosine

2'-deoxyadenosine

2'-deoxyinosine

5'-deoxyadenosine

pppGpp

dAMP

hypoxanthine

XMP

isoguanine

8-oxo-dGTP

8-oxo-GTP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

dGDP

dGTP

dIDP

dITP

IDP

ITP

dADP

dATP

AMP

ADP

ATP

GTP

GDP

cyclic-AMP

adenylo-succinate

dGMP

ppGpp

two adjacent thymidines in DNA

(5R)-5,6-dihydro-5-(thymidin-7-yl)thymidine (in DNA)

(R)-NADPHX

(S)-NADPHX

guanosine

inosine

adenosine

xanthosine

uridine

cytidine

2'-deoxyuridine

thymidine

2'-deoxycytidine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dUTP

dCTP

CTP

UTP

dUMP

dTMP

dCMP

UMP

CMP

dTDP

dUDP

dCDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

ADP-α-D-glucose

preQ₁

uracil

thymine

guanine

adenine

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-6B

precorrin-8x

precorrin-7

precorrin-1

precorrin-2

sirohydrochlorin

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

6-(hydroxymethyl)-7,8-dihydropterin

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

orotate

urate

protocatechuate

2,3-dihydroxybenzoate

enterobactin

4-aminobenzoate

acetaldehyde

D-glyceraldehyde

α-D-xylopyranose

β-D-galactopyranose

α-D-galactopyranose

ethanol

glycerol

maltotriose

raffinose

selaginose

stachyose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

α,α-trehalose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine

D-xylulose

β-D-fructofuranose

4-deoxy-L-erythro-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

sucrose 6^F-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-galactose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

geranyl diphosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

iron(III) dicitrate

allantoate

(S)-(+)-allantoin

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

chorismate

fumarate

L-aspartate

succinate

(S)-malate

3-carboxy-cis,cis-muconate

3-oxoadipate

3-phenyl-2-oxopropanoate

glyoxylate

pyruvate

2-oxoglutarate

butanoate

(R)-lactate

(R)-pantoate

acetate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

D-serine

glycine

L-cysteine

L-threonine

L-glutamine

L-asparagine

L-tyrosine

L-arginine

L-lysine

L-histidine

L-glutamate

L-proline

L-leucine

L-alanine

L-tryptophan

L-methionine

L-isoleucine

L-valine

L-phenylalanine

β-alanine

(R)-β-lysine

D-glutamate

D-alanine

L-isoglutamine

L-ornithine

L-aspartyl-4-phosphate

L,L-diaminopimelate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

L-2-amino-3-oxobutanoate

(2S, 3S)-3-methylaspartate

trans-4-hydroxy-L-proline

L-citrulline

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

L-homoserine

O-phospho-L-homoserine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-canaline

meso-diaminopimelate

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine