an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

CO₂

orotidine 5'-phosphate

H₂O

5-methylcytosine

isopentenyl diphosphate

3-phosphooxypyruvate

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

(S)-2-amino-6-oxohexanoate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

glutathione disulfide

acetyl phosphate

β-D-fructose 2,6-bisphosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-dehydro-3-deoxy-D-gluconate

hydrogen peroxide

hexulose 6-phosphate

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

citrate

oxaloacetate

carboxyphosphate

carbamoyl phosphate

(R)-5-phosphomevalonate

(R)-mevalonate

(R)-mevalonate diphosphate

prenyl diphosphate

glycerone phosphate

glycolate

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

phosphoenolpyruvate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

oxythiamine

4-amino-2-methyl-5-pyrimidinemethanol

pyrithiamine

propanoyl phosphate

xanthine

N-succinyl-L,L-2,6-diaminopimelate

thiamine diphosphate

4'-phosphopantetheine

(R)-4'-phosphopantothenoyl-L-cysteine

nicotinate adenine dinucleotide

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

O-ureido-L-homoserine

(R)-4'-phosphopantothenate

(R)-pantothenate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

DNA without lesion

α-D-glucosamine 1-phosphate

6-phospho D-glucono-1,5-lactone

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

canavaninosuccinate

L-arginino-succinate

L-canavanine

15-cis-4,4'-diapophytoene

S-ribosyl-L-homocysteine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(S)-dihydroorotate

D-gluconate 6-phosphate

quinolinate

autoinducer 2

urea

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

1-piperideine 6-carboxylate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

hydrogencarbonate

selenide

superoxide

OH^-

chloride

phosphate

diphosphate

Fe³⁺

Ca²⁺

Fe²⁺

ammonium

H⁺

2-chloroacetate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

oxygen

ethylphosphate

L-homocysteine

DNA with lesion

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

carbamate

L-α-amino-ε-keto-pimelate

L-saccharopine

L-aspartyl-4-phosphate

trans-4-hydroxy-L-proline

N-acetyl-L-citrulline

N-acetyl-L-ornithine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cysteine

L-methionine

L-glutamate

L-tyrosine

L-glutamine

L-lysine

L-alanine

L-selenocysteine

L-serine

L-proline

L,L-diaminopimelate

L-phenylalanine

L-arginine

L-aspartate

L-ornithine

L-asparagine

L-leucine

D-glutamate

D-alanine

D-aspartate

glycine

β-alanine

L-citrulline

L-glutamate-5-semialdehyde

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

L-aspartate 4-semialdehyde

L-canaline

L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

laurate

acetate

pyruvate

formate

(R)-lactate

2-oxoglutarate

3-phenyl-2-oxopropanoate

chorismate

succinate

fumarate

(S)-malate

2,3-dihydroxybenzoate

4-aminobenzoate

orotate

D-gluconate

(S)-1-pyrroline-5-carboxylate

stearate

palmitate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

all-trans-4,4'-diaponeurosporene

all-trans-4,4'-diapo-ζ-carotene

all-trans-4,4'-diapophytofluene

all-trans-4,4'-diapolycopene

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

geranylgeranyl diphosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(β-D ribofuranosyl)nicotinamide

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

glycerol

β-D-fructofuranose

α-D-galactopyranose

β-D-galactopyranose

α-D-glucopyranose

β-D-glucopyranose

D-glyceraldehyde

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

D-xylulose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

ethanol

methanol

formaldehyde

acetaldehyde

methylglyoxal

urate

guanine

adenine

AMP

GMP

IMP

XMP

ATP

GTP

ITP

ADP

GDP

IDP

dADP

dIDP

dGDP

dATP

dGTP

dITP

dAMP

dGMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyadenosine

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

FADH₂

FAD

2-(2-methylpyridin-3-yl)ethanol

isoguanine

uracil

cytosine

thymine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

dTMP

dUMP

CTP

cytidine-3'-monophosphate

uridine 3'-monophosphate

UTP

dUTP

dCMP

dCTP

dTTP

5-(hydroxymethyl)-2-methyl-4(1H)-pyrimidinone

aminomethylpyrimidine

UDP

dTDP

dCDP

CDP

dUDP

formylaminopyrimidine

5-fluorouracil

UMP

CMP

cytidine

uridine

thymidine

2'-deoxyuridine

2'-deoxycytidine

coenzyme A

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

guanosine 3'-monophosphate

adenosine 3'-monophosphate

adenylo-succinate

ppGpp

pppGpp

8-oxo-GTP

8-oxo-dGTP

5-fluorocytosine

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

NADP⁺

NAD⁺

NADPH

NADH

(S)-NADHX

(R)-NADHX

thiamine

nicotinate

D-glucono-1,5-lactone

malonyl-CoA

acetyl-CoA

3'-dephospho-CoA

succinyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

oleoyl-CoA

acetoacetyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

palmitoyl-CoA

cis-vaccenoyl-CoA

stearoyl-CoA

lauroyl-CoA

propanoyl-CoA

18-hydroxylinoleoyl-CoA

S-(hydroxymethyl)glutathione

3-sulfopyruvate

L-cysteate

4-methyl-5-(2-phosphooxyethyl)thiazole

5-(2-hydroxyethyl)-4-methylthiazole

glutathione

spermine

putrescine

spermidine

N¹-acetylspermine

N-acetylputrescine

N¹-acetylspermidine

hydroxyl radical