an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(2R,3S)-3-methylmalate

citraconate

urea

6-phospho D-glucono-1,5-lactone

hydrogen peroxide

quinolinate

(2S)-2-isopropyl-3-oxosuccinate

(S)-2-acetolactate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

N-succinyl-L,L-2,6-diaminopimelate

orotidine 5'-phosphate

(S)-dihydroorotate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

5-enolpyruvoyl-shikimate 3-phosphate

N-carbamoylputrescine

H₂O

phosphoenolpyruvate

α-D-glucosamine 1-phosphate

formate

CO₂

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

L-canavanine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-methylcytosine

5-phospho-β-D-ribosylamine

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

succinate semialdehyde

4-aminobutanoate

3-oxopropanoate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

carbamoyl phosphate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

2-succinylbenzoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-dehydropantoate

citrate

oxaloacetate

L-selenocystathionine

DNA without lesion

glycerone phosphate

acetyl phosphate

glycolate

D-gluconate 6-phosphate

xanthine

isochorismate

(lipoyl)adenylate

carboxyphosphate

urea-1-carboxylate

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

3-methyl-2-oxobutanoate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

autoinducer 2

S-ribosyl-L-homocysteine

1-deoxy-L-glycero-tetrulose 4-phosphate

(R)-4'-phosphopantothenate

(R)-pantothenate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

2,5-didehydro-D-gluconate

2-keto-D-gluconate

3-hydroxypropanal

1,3-propanediol

(4,5-dihydro-5-oxofuran-2-yl)-acetate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

N¹-(5-phospho-β-D-ribosyl)glycinamide

coproporphyrinogen III

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

D-alanyl-D-alanine

L-α-amino-ε-keto-pimelate

carbamate

L-citrulline

L-cysteine

L-methionine

L-aspartate

glycine

L-arginine

L-asparagine

L-glutamate

L-valine

L-isoleucine

L-lysine

L-glutamine

L-tyrosine

L-alanine

L-proline

L-leucine

L-canaline

L-homoserine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

S-adenosyl-L-methionine

L-homocysteine

L-ornithine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

meso-diaminopimelate

L-selenomethionine

seleno-L-homocysteine

L-aspartyl-4-phosphate

trans-4-hydroxy-L-proline

N-carbamoyl-L-aspartate

L,L-diaminopimelate

L-cystathionine

D-glutamate

D-alanine

D-aspartate

β-alanine

protocatechuate

2,3-dihydroxybenzoate

orotate

acetate

(R)-pantoate

D-gluconate

(S)-1-pyrroline-5-carboxylate

butanoate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

(S)-lactate

(R)-lactate

propanoate

pyruvate

2-oxoglutarate

3-oxoadipate

3-carboxy-cis,cis-muconate

chorismate

(3E)-2-oxohex-3-enedioate

succinate

fumarate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

acetamide

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

1-palmitoyl-2-myristoyl phosphatidate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-β-L-rhamnose

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

5-fluoro-5-deoxy-D-ribose 1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

β-D-fructofuranose

β-D-galactopyranose

α-D-galactopyranose

β-D-ribopyranose

aldehydo-D-ribose

α-D-ribofuranose

β-D-ribofuranose

glycolaldehyde

keto-D-fructose

D-xylulose

L-ribulose

glycerol

sucrose

stachyose

raffinose

ethanol

methylglyoxal

acetaldehyde

(S)-acetoin

diacetyl

adenine

guanine

AMP

GMP

IMP

XMP

ITP

GTP

ATP

GDP

ADP

dGDP

dADP

dGTP

dATP

dAMP

dGMP

hypoxanthine

adenosine

inosine

guanosine

xanthosine

2'-deoxyinosine

2'-deoxyguanosine

2'-deoxyadenosine

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydromonapterin

7,8-dihydroneopterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

reduced riboflavin

FMNH₂

riboflavin

FMN

uracil

cytosine

thymine

dTDP

UDP

dTMP

dUMP

CTP

UTP

CDP

dCDP

dUDP

dTTP

dCMP

dCTP

dUTP

UMP

CMP

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

5-fluorouracil

coenzyme A

(R)-lipoate

adenylo-succinate

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

ppGpp

pppGpp

5'-deoxyadenosine

5-hydroxy-CMP

5-hydroxy-CTP

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

5'-deoxy-5'-fluoroadenosine

5-fluorocytosine

(S)-NADHX

(R)-NADHX

nicotinate

(indol-3-yl)acetate

malonyl-CoA

acetyl-CoA

3'-dephospho-CoA

succinyl-CoA

isobutanoyl-CoA

2-methylacetoacetyl-CoA

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

palmitoleoyl-CoA

myristoyl-CoA

cis-vaccenoyl-CoA

butanoyl-CoA

propanoyl-CoA

18-hydroxylinoleoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

crotonyl-CoA

agmatine

spermidine

putrescine

2-aminoprop-2-enoate

2-iminopropanoate

hydrogencarbonate

chloride

phosphonate

phosphate

diphosphate

Fe²⁺

Co²⁺

ammonium

H⁺

2-chloroacetate

2-octaprenylphenol

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-citramalate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminosuccinate

oxygen

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

protoheme

ethylphosphate

DNA with lesion