an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

pyrazine-2-carboxylate

2-cyano-4-nitrophenol

(E)-3-(methoxycarbonyl)pent-2-enedioate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

5-(hydroxymethyl)-2-methylphenol

D-glycero-β-D-manno-heptose 1,7-bisphosphate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(2,3-dihydroxybenzoyl)adenylate

3-maleylpyruvate

pregn-5-ene-3,20-dione-17-ol

4-amino-4-deoxy-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

succinate semialdehyde

3-phosphonopyruvate

salicyl alcohol

propynoate

hydroxylamine

3-hydroxy-4-methylbenzaldehyde

(salicyl)adenylate

meso-tartrate

6-aminohexanoate linear dimer

acetoacetate

(R)-4'-phosphopantothenoyl-L-cysteine

(3R)-sophorol

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

4-methylgentisate

(2E)-3-methyl-4,6-dioxohept-2-enedioate

(2E)-2-methyl-4,6-dioxohept-2-enedioate

N-ethylmaleimide

N-ethylsuccinimide

(L-aspartyl)adenylate

4-aminobutanoate

1,4-dihydroxy-2-naphthoate

(S)-5-hydroxyisourate

β-D-galactosyl-(1→4)-N-acetyl-D-glucosamine

5-nitro benzisoxazole

2-hydroxy-3-oxosuccinate

(4Z)-2-oxohept-4-enedioate

(4S)-4-hydroxy-2-oxoheptanedioate

5-carboxymethyl-2-hydroxymuconate

3-hydroxy-5-oxohexanoate

3-hydroxy-5- oxohexanoyl-CoA

(S)-5-amino-3-oxohexanoate

carbon monoxide

2-phosphoglycolate

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-dehydro-3-deoxy-D-galactonate

L-gulono-1,4-lactone

glycolate

5-androstene-3,17-dione

pregn-5-ene-3,20-dione

N-acetyl-β-D-mannosaminuronyl-(1→4)-N-acetyl-α-D-glucosaminyl-diphospho-ditrans,octacis-undecaprenol

coenzyme F₃₉₀-A

D-glycero-β-D-manno-heptose 1-phosphate

2-C-methyl-D-erythritol 4-phosphate

ammonia

citraconate

(2R,3S)-3-methylmalate

formamide

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

propanoyl phosphate

5-guanidino-2-oxopentanoate

N-(5-phosphoribosyl)-anthranilate

3-hydroxypropanoate

3-oxopropanoate

urea-1-carboxylate

2-hydroxyformononetin

2'-hydroxypseudobaptigenin

hydroxypyruvate

tartronate semialdehyde

5-(methylsulfanyl)-ribulose 1-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

arsenite

4-acetamidobutanal

4-acetamidobutanoate

(2E)-hexadecenal

3,4-dihydroxyphenylacetaldehyde

D-glucurono-6,3-lactone

imidazole acetaldehyde

4-imidazoleacetate

dimethylsulfoniopropanoate

palmitaldehyde

prop-2-ynal

3-methoxy-4-hydroxyphenylglycolaldehyde

5-hydroxyindole acetaldehyde

5-hydroxyindole acetate

methylsalicylate

4-amino-2-methyl-5-pyrimidinemethanol

UDP-4-deoxy-4-formamido-β-L-arabinopyranose

4-deoxy-4-formamido-α-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate

2-deoxy-D-glucose 6-phosphate

2-deoxy-D-glucose

(R)-3-(phenyl)lactoyl-CoA

2-dehydro-3-deoxy-D-gluconate 6-phosphate

2-keto-L-gulonate

5-dehydro-D-gluconate

hexulose 6-phosphate

4-hydroxy-2-nonenal

D-erythro-imidazole-glycerol-phosphate

3-mercaptopyruvate

DNA without lesion

pimeloyl-CoA

6-phospho D-glucono-1,5-lactone

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

(lipoyl)adenylate

(R)-4'-phosphopantothenate

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

L-canavanine

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

aminoacetone

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

orotidine 5'-phosphate

isopentenyl diphosphate

carboxyphosphate

L-selenocystathionine

4'-phosphopantetheine

5-amino-6-(5-phospho-D-ribosylamino)uracil

thiamine diphosphate

2-dehydropantoate

xanthine

γ-L-glutamyl 5-phosphate

autoinducer 2

prephenate

N¹-(5-phospho-β-D-ribosyl)glycinamide

thiamine phosphate

N-succinyl-L,L-2,6-diaminopimelate

glutathione disulfide

2-dehydro-3-deoxy-D-galactonate 6-phosphate

shikimate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

preuroporphyrinogen

prenyl diphosphate

α-D-glucosamine 1-phosphate

carbamoyl phosphate

5-methylcytosine

H₂

ethanolamine

3-dehydroquinate

3-dehydroshikimate

3-deoxy-α-D-manno-2-octulosonate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

lipid X

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

carbonic acid

(R)-pantothenate

S-ribosyl-L-homocysteine

β-D-ribosylnicotinate

urea

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

3-methyl-2-oxobutanoate

(2S)-2-isopropylmalate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

quinolinate

dihydrolipoamide

S-acetyldihydrolipoamide

adenosine 3',5'-bisphosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

coproporphyrinogen III

hydrogen selenide

O-acetyl-L-serine

3-(4-hydroxyphenyl)-3-oxo-propanoyl-CoA

4-imidazolone-5-propanoate

urocanate

5-phospho-β-D-ribosylamine

acetyl phosphate

isochorismate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

1,4-dihydroxy-2-naphthoyl-CoA

2-succinylbenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

oxalosuccinate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

glycerone phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

4-amino-4-deoxychorismate

selenophosphate

anthranilate

5-aminolevulinate

porphobilinogen

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

glutathionylspermidine

5-(methylsulfanyl)-α-D-ribose

S-methyl-5-thio-α-D-ribose 1-phosphate

S-formylglutathione

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoyl-CoA

3-deoxy-D-manno-octulosonate 8-phosphate

(S)-4-amino-5-oxopentanoate

hydrogen peroxide

5-amino-6-(D-ribitylamino)uracil

2'-(5''-triphospho-α-D-ribosyl)-3'-dephospho-CoA

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(S)-dihydroorotate

lipid A disaccharide (E. coli)

lipid IV_A

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

histidinal

L-histidinol phosphate

histidinol

2-dehydro-3-deoxy-D-gluconate

D-gluconate 6-phosphate

dethiobiotin

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

CO₂

oxaloacetate

citrate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

H₂O

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

4-oxoglutaramate

octadecanal

2-amino-3-carboxymuconate-6-semialdehyde

selenodiglutathione

glutathioselenol

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

imidazole acetol-phosphate

S-methyl-5'-thioadenosine

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

pyruvic oxime

3-methylgentisate

(enterobacterial common antigen)-undecaprenyl diphosphate

5-amino-6-(5-phospho-D-ribitylamino)uracil

2-hydroxy-5-carboxymethylmuconate semialdehyde

5-α-androstan-3β,17β-diol

N-acetyl-D-muramate 6-phosphate

6-aminohexanoate cyclic dimer

(S)-ureidoglycolate

N-carbamoyl-2-oxoglycine

oxamate

(L-seryl)adenylate

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2,3-didehydroadipyl-CoA

N⁵-carboxyaminoimidazole ribonucleotide

L-tartrate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

ethylphosphate

2-chloroacetate

dTDP-4-amino-4,6-dideoxy-α-D-galactose

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-citramalate

phosphonoacetaldehyde

(glutathion-S-yl)-4-hydroxy-2-nonenal

phenylacetate

hydrogen cyanide

cob(I)alamin

adenosylcobalamin

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobinamide

protoheme

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

siroheme

hydrogen sulfide

oxygen

2-iminopropanoate

2-iminosuccinate

2-iminobutanoate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(R)-3-(phenyl)lactate

(S)-methylmalonate-semialdehyde

3-(all-trans-octaprenyl)benzene-1,2-diol

2-nonaprenylphenol

2-decaprenylphenol

2-heptaprenylphenol

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

preQ₀

(indole-3-yl)acetonitrile

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

fluoroacetaldehyde

fluoroacetate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxyribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5'-chloro-5'-deoxyadenosine

Cr³⁺

Fe³⁺

Cr⁶⁺

ammonium

K⁺

H⁺

Fe²⁺

Cd²⁺

tetrathionate

nitrite

nitrate

sulfite

selenate

thiosulfate

hydrogencarbonate

selenide

molybdate

sulfate

hydrogensulfite

selenite

OH^-

superoxide

chloride

phosphate

triphosphate

diphosphate

nitric oxide

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

sn-glycero-3-phosphoethanolamine

glycerophosphoserine

glycerophosphoglycerol

1-oleoyl-2-palmitoyl-phosphatidylglycerol

glycine betaine

betaine aldehyde hydrate

betaine aldehyde

choline

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

N¹-acetylspermidine

N¹-acetylspermine

N-acetylputrescine

spermine

cadaverine

putrescine

spermidine

3-dimethylsulfoniopropionaldehyde

S-(hydroxymethyl)glutathione

thiocyanate

methanethiol

glutathione

S-sulfanylglutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

(R)-S-lactoylglutathione

3-sulfino-L-alanine

all-trans-retinyl palmitate

D-glucono-1,5-lactone

gentisyl-CoA

salicyl-CoA

2-methylacetoacetyl-CoA

(S)-3-aminobutanoyl-CoA

phenylacetyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

dihomo γ-linolenoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-hexanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxooctanoyl)-CoA

5-cis, 7-trans-3-oxo-tetradecadienoyl-CoA

(3Z,5E)-dodeca-3,5-dienoyl-CoA

4-trans-3-oxo-undecenoyl-CoA

2-trans-nonenoyl-CoA

6-cis, 3-oxo-tridecenoyl-CoA

4-cis-undecenoyl-CoA

4-hydroxybenzoyl-CoA

(5E)-3-oxo-dodec-5-enoyl-CoA

(3E)-dec-3-enoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-butanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxohexanoyl)-CoA

6-trans-3-oxo-tridecenoyl-CoA

4-trans-undecenoyl-CoA

(+)-7-epi-jasmonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3-oxobutanoyl)-CoA

malonyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3'-dephospho-CoA

succinyl-CoA

acetyl-CoA

(3S)-hydroxyadipyl-CoA

phytenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-dodec-2-enoyl-CoA

(E)-cinnamoyl-CoA

(3Z)-dodec-3-enoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxylinoleoyl-CoA

18-hydroxyoleoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxystearoyl-CoA

(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(Z)-15-tetracosenoyl-CoA

pentanoyl-CoA

propanoyl-CoA

butanoyl-CoA

hexanoyl-CoA

decanoyl-CoA

octanoyl-CoA

lauroyl-CoA

palmitoleoyl-CoA

cis-vaccenoyl-CoA

myristoyl-CoA

palmitoyl-CoA

stearoyl-CoA

pristanoyl-CoA

hexadecanedioyl-CoA

(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA

3-oxoadipyl-CoA

3-oxohexanoyl-CoA

3-oxodecanoyl-CoA

3-oxooctanoyl-CoA

3-oxododecanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(6Z,9Z,12Z,15Z,18Z)-3-oxotetracosapentaenoyl-CoA

(6Z,9Z,12Z,15Z,18Z,21Z)-3-oxotetracosahexaenoyl-CoA

3-oxo-myristoyl-CoA

3-oxo-(5Z)-tetradecenoyl-CoA

3-oxo-palmitoyl-CoA

ethene

heptadecane

cholest-4-en-3-one

3-oxo-4-pregnene-20-carboxyl-CoA

3,22-dioxochol-4-en-24-oyl-CoA

progesterone

glycocholate

cholate

cholest-5-en-3-one

17-α-hydroxyprogesterone

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3β-ol

androst-4-ene-3,17-dione

campesterol

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

thiamine

nicotinamide

riboflavin

nicotinate

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxal

pyridoxine

pyridoxamine

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

pyridoxal 5'-phosphate

menadione

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinone

caldariellaquinol

ubiquinol-7

ubiquinol-10

ubiquinol-9

ubiquinol-8

menaquinol-6

menaquinol-9

menaquinol-10

menaquinol-7

menaquinol-12

menaquinol-8

menaquinol-13

menaquinol-11

demethylmenaquinol-8

demethylmenaquinol-13

demethylmenaquinol-10

demethylmenaquinol-9

demethylmenaquinol-6

demethylmenaquinol-7

demethylmenaquinol-12

demethylmenaquinol-11

3-demethylubiquinol-7

3-demethylubiquinol-9

3-demethylubiquinol-8

3-demethylubiquinol-10

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

hypoxanthine

dIMP

XTP

dITP

IDP

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-AMP

adenosine 3'-monophosphate

guanosine 3'-monophosphate

2'-deoxyguanosine

ppGpp

pppGpp

ITP

dAMP

dGMP

adenylo-succinate

IMP

XMP

GMP

2'-deoxyadenosine

2'-deoxyinosine

dATP

dGTP

1-(5-phospho-β-D-ribosyl)-ATP

GTP

AMP

ATP

5'-deoxyadenosine

dADP

ADP

dGDP

GDP

isoguanine

8-oxo-dGTP

8-oxo-GTP

dIDP

5-fluorocytosine

5-fluorouracil

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

guanosine

xanthosine

adenosine

inosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

CTP

UTP

dUMP

dTMP

dCMP

UMP

CMP

dTDP

dUDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

cytidine-3'-monophosphate

uridine 3'-monophosphate

ADP-α-D-glucose

preQ₁

thymine

cytosine

uracil

guanine

adenine

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-β-L-threo-pentapyranos-4-ulose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-4-amino-4-deoxy-β-L-arabinopyranose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-dehydro-β-L-rhamnose

dTDP-4-acetamido-4,6-dideoxy-α-D-galactose

dTDP-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

oxidized coenzyme F₄₂₀-2

guanylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-2

precorrin-1

sirohydrochlorin

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydromonapterin triphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydromonapterin

7,8-dihydroneopterin

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydroneopterin 3'-phosphate

7,8-dihydropteroate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

5,6,7,8-tetrahydromonapterin

orotate

(3R)-vestitone

urate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

vanillyl mandelate

phenylacetaldehyde

benzaldehyde

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,5-xylenol

3-(hydroxymethyl)-5-methylphenol

3,5-xylenol

3-hydroxy-5-methylbenzaldehyde

3,4-dihydroxyphenylacetate

protocatechuate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxymandelate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

salicylate

trans-cinnamate

3-hydroxy-4-methyl-benzoate

3-hydroxy-5-methyl-benzoate

4-aminobenzoate

benzoate

diacetyl

3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone

6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone

methylglyoxal

glycolaldehyde

formaldehyde

1-octanal

acetaldehyde

(S)-lactaldehyde

dodecanal

decanal

phytenal

D-glyceraldehyde

α-D-ribofuranose

α-D-glucopyranose

β-D-glucopyranose

α-D-galactopyranose

β-D-galactopyranose

methanol

ethanol

glycerol

D-arabinitol

D-ribitol

D-mannitol 1-phosphate

myo-inositol

1D-chiro-inositol

scyllo-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1-keto-D-chiro-inositol

scyllo-inosose

D-ononitol

D-galactosylononitol

D-myo-inositol (1,4,5)-trisphosphate

D-myo-inositol (1,3,4)-trisphosphate

D-myo-inositol (1,3,4,5)-tetrakisphosphate

D-myo-inositol (1,4)-bisphosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 3-monophosphate

1D-myo-inositol 4-monophosphate

galactinol

1-(β-D ribofuranosyl)nicotinamide

aldehydo-D-galacturonate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A

4'-α-L-Ara4N-α-Kdo-(2→4)-α-Kdo-(2→6)-[P4'-α-L-ara4N]-lipid A

heptosyl-Kdo₂-lipid A

maltotriose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

L-xylulose

D-xylulose

D-ribulose

L-ribulose

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

D-ribulose-1,5-bisphosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

keto-L-tagatose 6-phosphate

D-fructose 6-phosphate

D-tagatofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

D-galactonate

L-gulonate

D-gluconate

D-mannonate

(3E,5Z)-tetradeca-3,5-dienoyl-CoA

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

1-linoleoyl-sn-glycero-3-phosphocholine

1-palmitoyl-sn-glycero-3-phosphocholine

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1,2-dipalmitoyl-sn-glycero-3-phosphocholine

1-palmitoyl-2-linoleoyl-phosphatidylcholine

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-18:1-2-18:1-phosphatidylethanolamine

geranyl diphosphate

trans,octacis-decaprenyl phosphate

3-oxo-24-ethyl-cholest-5-ene

3-oxo-24-ethyl-cholest-4-ene

di-trans,octa-cis-undecaprenyl phosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

allantoate

(S)-(+)-allantoin

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

pyrazinamide

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

chorismate

L-aspartate

succinate

fumarate

(S)-malate

D-glucarate

α,ω-9Z-octadecenedioate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

trans-aconitate

cis-2-methylaconitate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

pyruvate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

2-oxoglutarate

acetate

formate

propanoate

(R)-lactate

(S)-lactate

butanoate

pentanoate

decanoate

octanoate

laurate

7-hydroxylaurate

gentisate

(15Z)-tetracosenoate

(5Z,8Z,11Z,14Z,17Z)-icosapentaenoate

(3E,5Z)-tetradecadienoate

oleate

palmitate

stearate

α-linolenate

linoleate

(2E)-hexadecenoate

di-homo-γ-linolenate

phytenate

(R)-pantoate

5-deoxy-D-glucuronate

D-tagaturonate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-cysteine

glycine

L-threonine

L-tyrosine

L-asparagine

L-glutamine

L-lysine

L-arginine

L-histidine

L-glutamate

L-methionine

L-isoleucine

L-valine

L-tryptophan

L-selenocysteine

L-alanine

L-proline

L-phenylalanine

L-leucine

β-alanine

D-glutamate

D-ornithine

D-arginine

D-aspartate

D-cysteine

D-alanine

D-lysine

D-proline

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-cystathionine

L-ornithine

L-isoglutamine

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

iminoarginine

L-2-amino-3-oxobutanoate

seleno-L-homocysteine

L-selenomethionine

3-phospho-L-serine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-canaline

O-succinyl-L-homoserine

L-aspartate 4-semialdehyde

L-homoserine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

L-homocysteine

S-sulfo-L-cysteine

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysine

N-acetyl-D-glucosaminyl-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

(S)-ureidoglycine

a mismatched DNA base pair

a properly matched DNA base pair

DNA with lesion