an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

1,4-dihydroxy-2-naphthoate

1,4-dihydroxy-2-naphthoyl-CoA

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

2-amino-3-carboxymuconate-6-semialdehyde

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

ammonia

(2E)-2-hydroxypenta-2,4-dienoate

4-oxalocrotonate

5-hydroxyindole thiazolidine carboxylate

(3E)-2-oxopent-3-enoate

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

H₂O

D-galactosamine-6-phosphate

N-acetyl-D-galactosamine 6-phosphate

thiamine diphosphate

oxaloacetate

citrate

dihydroxyacetone

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

5-(methylsulfanyl)-ribulose 1-phosphate

S-methyl-5-thio-α-D-ribose 1-phosphate

glycerone phosphate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

O-acetyl-L-serine

hydrogen selenide

urea

L-canavanine

4-imidazolone-5-propanoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

xanthine

hydrogen peroxide

phosphoenolpyruvate

5-amino-6-(D-ribitylamino)uracil

1-deoxy-L-glycero-tetrulose 4-phosphate

formate

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

5-amino-6-(5-phospho-D-ribosylamino)uracil

5-amino-6-(5-phospho-D-ribitylamino)uracil

S-adenosyl 3-(methylsulfanyl)propylamine

CO₂

S-methyl-5'-thioadenosine

L-selenocystathionine

(2E,4Z)-2-hydroxymuconate

(2Z,4E)-2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate

(2E,4Z)-2-hydroxy-6-oxohepta-2,4-dienoate

2-hydroxy-6-oxohepta-2,4-dienoate

(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate

nicotinate adenine dinucleotide

3-dehydroshikimate

shikimate

4'-phosphopantetheine

acetyl phosphate

N-acetyl-D-muramate 6-phosphate

coproporphyrinogen III

carbon monoxide

carbamoyl phosphate

(R)-4'-phosphopantothenate

(R)-pantothenate

4-amino-4-deoxychorismate

anthranilate

hydroxypyruvate

succinate semialdehyde

α-ribazole

α-ribazole 5'-phosphate

2-amino-2-deoxy-D-gluconate 6-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N⁵-carboxyaminoimidazole ribonucleotide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

2-methylbutanal

2-methylbutanol

isobutanol

3-methoxy-4-hydroxyphenylglycolaldehyde

3-methylbutanal

3-methylbutanol

5-hydroxyindole acetaldehyde

5-hydroxytryptophol

2-phenylethanol

indole-3-glycol aldehyde

indole-3-glycol

3-phosphooxypyruvate

2,5-diaminohexanoate

L-β-lysine

(S)-5-amino-3-oxohexanoate

(3S,5S)-3,5-diaminohexanoate

orotidine 5'-phosphate

(S)-dihydroorotate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

isopentenyl diphosphate

prephenate

selenophosphate

5-enolpyruvoyl-shikimate 3-phosphate

acetoacetate

3-dehydrocarnitine

2-dehydropantoate

biuret

2-oleoylglycerol

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-pyrimidinemethanol

2-oxoadipate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

2-succinylbenzoate

salicyl alcohol

α-D-glucosamine 1-phosphate

3-ureidopropanoate

histidinol

histidinal

methylsalicylate

2-C-methyl-D-erythritol 4-phosphate

6-phospho D-glucono-1,5-lactone

(E)-4-coumaroyl-CoA

N-(5-phosphoribosyl)-anthranilate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

UDP-N-acetyl-α-D-glucosaminouronate

(S)-4-hydroxy-2-oxohexanoate

(2Z,4Z)-2-hydroxyhexa-2,4-dienoate

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

(S)-ureidoglycolate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

urocanate

4-guanidinobutanoate

4-guanidinobutyramide

acrylate

acrylamide

(indol-3-yl)acetamide

propionamide

6-hydroxynicotinate

(R)-4'-phosphopantothenoyl-L-cysteine

L-histidinol phosphate

carboxyphosphate

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

H₂

(S)-2,3,4,5-tetrahydrodipicolinate

N-acetyl-L,L-2,6-diaminopimelate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

shikimate 3-phosphate

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

4-methyl-2-oxopentanoate

S-acetyldihydrolipoamide

dihydrolipoamide

2-(α-hydroxyethyl)thiamine diphosphate

1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

5-(methylsulfanyl)-α-D-ribose

8-amino-7-oxononanoate

pimeloyl-CoA

2,5-hexanedione

(2S,5S)-hexanediol

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(2S)-2-{[1-(R)-carboxyethyl]amino}pentanoate

butanoyl phosphate

(R)-mevalonate diphosphate

(R)-5-phosphomevalonate

oxalosuccinate

5,6-dimethylbenzimidazole

γ-L-glutamyl 5-phosphate

S-methyl-5'-thioinosine

S-Inosyl-L-homocysteine

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

quinolinate

D-gluconate 6-phosphate

N-succinyl-L,L-2,6-diaminopimelate

(indol-3 yl)acetyl-CoA

(indol-3-yl)pyruvate

imidazole acetol-phosphate

S-ribosyl-L-homocysteine

preuroporphyrinogen

porphobilinogen

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate

3-mercaptopyruvate

(S)-2,3-dihydrodipicolinate

propanoyl phosphate

formamide

creatinine

dimethylthiophosphate

diethylphosphate

diethylthiophosphate

(lipoyl)adenylate

D-erythro-imidazole-glycerol-phosphate

phloretin

pinocembrin chalcone

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

2-dehydro-3-deoxy-D-gluconate

DNA without lesion

crotonate

(S)-2-amino-6-oxohexanoate

aminoacetone

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

glycolate

hydrogenobyrinate a,c-diamide

hydrogenobyrinate

2-methylpropanoyl phosphate

isobutanoate

(R)-mevalonate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

ManNAc-GlcNAc-PP-undecaprenol

glutathionylspermidine

(2Z,2E)-2-hydroxy-6-oxo-6-(2,3-dihydroxyphenyl)-hexa-2,4-dienoate

(2Z,2E)-2-hydroxy-6-oxo-6-(2-hydroxyphenyl)-hexa-2,4-dienoate

2,6-dioxo-6-phenylhexa-3-enoate

2,2',3-trihydroxybiphenyl

2,2',3,3'-tetrahydroxybiphenyl

pyrogallol

CDP-glycerol

(2R)-2-amino-4-oxopentanoate

(2R,4S)-2, 4-diaminopentanoate

5-aminopentanoate

2-oxoglutaramate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

glutathione disulfide

autoinducer 2

propan-2-ol

thiamine

riboflavin

nicotinate

nicotinamide

all-trans-retinol

L-carnitine

adenosylcobalamin

cob(I)alamin

menadione

pyridoxal 5'-phosphate

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

ethene

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

(+)-7-epi-jasmonate

acetyl-CoA

(3S)-citryl-CoA

(S)-3-aminobutanoyl-CoA

3'-dephospho-CoA

succinyl-CoA

(E)-glutaconyl-CoA

(3R)-hydroxy-5-trans-dodecenoyl-CoA

(2E,5E)-dodeca-2,5-dienoyl-CoA

(3R)-hydroxy, 6-cis-tridecenoyl-CoA

2-trans,6-cis-tridecadienoyl-CoA

(3R)-hydroxy, 4-trans-undecenoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3R)-hydroxy-undecanoyl-CoA

(3E)-undec-2-enoyl-CoA

(3R)-hydroxy-nonanoyl-CoA

2-trans-nonenoyl-CoA

(3R)-hydroxy- 5-cis, 7-trans-tetradecadienoyl-CoA

2-trans, 5-cis, 7-trans-tetradecatrienoyl-CoA

(3R)-hydroxy, 6-trans-tridecenoyl-CoA

2-trans-6-trans-tridecadienoyl-CoA

malonyl-CoA

sulfoacetyl-CoA

3-methylcrotonyl-CoA

isovaleryl-CoA

isobutanoyl-CoA

3-methylglutaconyl-CoA

acryloyl-CoA

3-hydroxypropanoyl-CoA

CoA-disulfide

2-methylacetoacetyl-CoA

(R)-2-hydroxyglutaryl-CoA

dihydro-4-coumaroyl-CoA

(2R)-ethylmalonyl-CoA

(2S)-ethylmalonyl-CoA

(+)-7-epi-jasmonoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(E)-cinnamoyl-CoA

crotonyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

oleoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

hexadecanedioyl-CoA

palmitoleoyl-CoA

stearoyl-CoA

cis-vaccenoyl-CoA

palmitoyl-CoA

myristoyl-CoA

18-hydroxyoleoyl-CoA

lauroyl-CoA

propanoyl-CoA

butanoyl-CoA

pentanoyl-CoA

cerotoyl-CoA

18-hydroxylinoleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

2-carboxy-cerotoyl-CoA

all-trans-retinyl palmitate

1-oleoyl-sn-glycerol

S-(hydroxymethyl)glutathione

3-(methylsulfanyl)propanal

methionol

glutathione

3-sulfocatechol

(2R)-phospho-3-sulfolactate

sulfoacetaldehyde

3-sulfopyruvate

L-cysteate

sulfoacetate

5-(2-hydroxyethyl)-4-methylthiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

3-(methylsulfanyl)propanoate

thiocyanate

S-sulfanylglutathione

1-oleoyl-2-palmitoyl-phosphatidylglycerol

(2E,6E)-farnesyl diphosphate

hydroxyl radical

superoxide

OH^-

hydrogensulfite

thiosulfate

sulfite

nitrite

hydrogencarbonate

selenide

molybdate

phosphonate

phosphate

diphosphate

triphosphate

chloride

Fe³⁺

Ca²⁺

Cd²⁺

Fe²⁺

Zn²⁺

ammonium

H⁺

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

2-chloroacetate

5-fluoro-5-deoxy-D-ribose 1-phosphate

5'-deoxy-5'-fluoroadenosine

4-nitrophenol

paraoxon

parathion

agmatine

putrescine

spermidine

cadaverine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

preQ₀

hydrogen cyanide

(indole-3-yl)acetonitrile

2-octaprenylphenol

(S)-ureidoglycine

N-acetyl-D-mannosamine 6-phosphate

α-D-glucosamine 6-phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

hydrogen sulfide

oxygen

uroporphyrinogen-I

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-III

protoheme

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

adenosyl-cobinamide phosphate

cobyrinate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

cobalt-precorrin-5A

cobalt-precorrin-4

N₂

L-homocysteine

DNA with lesion

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

L-alanyl-L-glutamate

L-alanyl-D-glutamate

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

carbamate

2-hydroxy-5-oxoproline

seleno-L-homocysteine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

L-saccharopine

O-acetyl-L-homoserine

S-(2E,6E)-farnesyl-L-cysteine

trans-4-hydroxy-L-proline

(2S, 3S)-3-methylaspartate

sarcosine

3-phospho-L-serine

N-carbamoylglycine

N-acetyl-L-glutamate

N-acetyl-L-ornithine

N-acetyl-L-citrulline

L-2-acetamido-6-oxoheptanedioate

N-formimino-L-glutamate

N-carbamoyl-L-aspartate

L-cysteine

L-methionine

L-glutamate

L-glutamine

L-lysine

L-selenocysteine

L-tryptophan

L-ornithine

L-arginine

L-proline

L-threonine

L-cystathionine

L-serine

L-aspartate

L-alanine

L-phenylalanine

L,L-diaminopimelate

L-isoleucine

L-asparagine

L-histidine

L-valine

L-tyrosine

L-leucine

L-norvaline

D-alanine

D-glutamate

D-lysine

D-ornithine

D-proline

glycine

N-carbamoylsarcosine

creatine

β-alanine

(R)-3-amino-2-methylpropanoate

L-citrulline

S-adenosyl-L-homocysteine

S-adenosyl-L-methionine

S-sulfo-L-cysteine

L-canaline

L-aspartate 4-semialdehyde

hypoglycin A

L-homoserine

1-aminocyclopropane-1-carboxylate

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

L-allo-threonine

meso-diaminopimelate

Gro-P-ManNAc-GlcNAc-PP-undecaprenol

UDP-N-acetyl-α-D-galactosaminouronate

laurate

stearate

palmitate

butanoate

pentanoate

13-[O(2')-β-D-glucopyranosyl-β-D-glucopyranosyloxy]docosanoate O(6'')-acetate

13-sophorosyloxydocosanoate 6',6''-diacetate

sophorosyloxydocosanoate

oleate

leukotriene-D4

leukotriene-E4

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1,2-dicis-vaccenoyl-phosphatidate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

(R)-3-hydroxybutanoate

(R)-lactate

(S)-lactate

propanoate

2-oxobutanoate

2-oxoglutarate

pyruvate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

cis-homoaconitate

(2R)-homocitrate

cis-aconitate

D-threo-isocitrate

3-(carbamoylamino)-2-methylpropanoate

chorismate

(3E)-2-oxohex-3-enedioate

fumarate

succinate

(S)-malate

salicylate

2,3-dihydroxybenzoate

4-aminobenzoate

benzoate

5-deoxy-D-glucuronate

acetate

orotate

(R)-pantoate

allantoate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-galacturonate

acetamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-4-imidazolecarboxyamide

(S)-(+)-allantoin

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1-oleoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

3-octaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

all-trans-heptaprenyl diphosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

mono-trans,octa-cis-decaprenyl diphosphate

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

iron(III) dicitrate

ferric-enterobactin complex

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

coumarin

D-altronate

1-(β-D ribofuranosyl)nicotinamide

a (1→4)-β-D-mannooligosaccharide

sucrose

β-D-mannosyl-(1→4)-D-glucose

β-D-mannopyranosyl-(1→4)-β-D-mannopyranose

α,α-trehalose

stachyose

raffinose

glycerol

D-sorbitol

L-iditol

β-D-fructofuranose

α-L-rhamnopyranose

β-L-rhamnopyranose

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-β-D-glucosamine

N-acetyl-β-D-mannosamine

N-acetyl-α-D-glucosamine 1-phosphate

keto-L-sorbose

keto-D-fructose

β-D-ribopyranose

β-D-galactopyranose

α-D-galactopyranose

β-D-glucopyranose

α-D-glucopyranose

D-glyceraldehyde

α-D-ribofuranose

glycolaldehyde

keto-L-rhamnulose

D-xylulose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

salicin 6-phosphate

methyl β-D-glucoside 6-phosphate

arbutin-6-phosphate

UDP-α-D-galactose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

L-rhamnulose 1-phosphate

L-fuculose 1-phosphate

α-D-glucopyranose 1-phosphate

α-D-galactose 1-phosphate

α-D-mannose 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-galactose 6-phosphate

α-D-galactose 6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

D-tagatofuranose 1,6-bisphosphate

D-tagatofuranose 6-phosphate

6-deoxy-5-ketofructose 1-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

β-D-mannopyranose 6-phosphate

α-D-mannopyranose 6-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

D-ribulose-1,5-bisphosphate

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a mature peptidoglycan with L,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)

a mature peptidoglycan_(n) (meso-DAP containing)

a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide

a mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer (mycobacteria)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

a mature peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-links (meso-diaminopimelate containing)

a peptidoglycan dimer (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan with D,D cross-link (S. aureus)

a peptidoglycan tetramer with a D,D cross-link (Enterococcus faecium)

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-α-D-perosamine

hydroquinone

4-methylcatechol

3-methylcatechol

catechol

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylglycol

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

scyllo-inosose

phytol

ethanol

propan-1-ol

butan-1-ol

methanol

(2E,6E)-farnesal

hydroxypyruvaldehyde phosphate

(4-hydroxyphenyl)acetaldehyde

phenylacetaldehyde

(S)-lactaldehyde

acetaldehyde

isobutanal

1-propanal

formaldehyde

butan-1-al

phytenal

methylglyoxal

diacetyl

acetone

2',4,4',6'-tetrahydroxychalcone

isoliquiritigenin

caldariellaquinone

4-tyrosol

cyanuric acid

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

4-hydroxybenzoate

urate

2,2'-dihydroxybiphenyl

phenol

4-aminophenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

methyl parathion

amino-parathion

3-methoxy-4-hydroxyphenylglycol

6-isobutyl-4-hydroxy-2-pyrone

coumarinate

menadiol

caldariellaquinol

adenine

guanine

GDP

ADP

IDP

AMP

XMP

GMP

IMP

ATP

GTP

ITP

dGDP

dADP

dIDP

dAMP

dGMP

dGTP

dATP

dITP

hypoxanthine

xanthosine

guanosine

inosine

adenosine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

FADH₂

FMNH₂

reduced riboflavin

FAD

FMN

7,8-dihydroneopterin 3'-phosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin

7,8-dihydromonapterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

7,8-dihydropterin

molybdopterin adenine dinucleotide

molybdopterin

adenylyl molybdenum cofactor

MoO₂-molybdopterin cofactor

bis(guanylyl molybdopterin) cofactor

bis(molybdenum cofactor)

guanylyl molybdenum cofactor

7,8-dihydropteroate

hydantoin

precorrin-2

precorrin-1

precorrin-8x

precorrin-7

precorrin-6B

preQ₁

isoguanine

uracil

thymine

dUMP

dCMP

dTDP

dTMP

UDP

UTP

dCDP

CDP

dTTP

dCTP

dUTP

CTP

5,6-dihydrouracil

5,6-dihydrothymine

dUDP

dipicolinate

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

UMP

CMP

coenzyme A

(R)-lipoate

8-oxo-GTP

8-oxo-dGTP

5'-deoxyadenosine

pppGpp

ppGpp

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

cyclic-AMP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

5-hydroxy-CMP

5-hydroxy-CTP

2-hydroxy-dATP

cyclic di-3',5'-guanylate

cyclic di-3',5'-adenylate

NAD⁺

NADP⁺

NADH

NADPH

(S)-NADPHX

(R)-NADPHX

(S)-NADHX

(R)-NADHX