ID Name References
C1

an oxidized electron donor

C2

a reduced electron donor

C3

a deaminated amino group acceptor

C4

an aminated amino group acceptor

C5

Charged-LEU-tRNAs

C6

LEU-tRNAs

C7

a 2-oxo acid

C8

an amino acid

C9

an acyl-CoA

C10

a carboxylate

C11

an oxidized ferredoxin [iron-sulfur] cluster

C12

a reduced ferredoxin [iron-sulfur] cluster

C13

NAD(P)H

C14

NAD(P)+

C15

an L-tyrosyl-[tRNAtyr]

C16

a tRNAtyr

C17

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

C18

4α,14α-dimethyl-porifersta-8,25(27)-dienol

C24

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

C26

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

C27

isoshowacene

C29

2-hydroxyhexadecanal

C30

16-sinapoyloxypalmitate

C31

3-methylquinolin-2-ol

C32

(22R)-hydroxycholesterol

C37

N-(2-methylpropyl)hydroxylamine

C38

chloroeremomycin

C39

3-hydroxy-3-methylbutanoate

C40

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C41

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C42

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

C43

rhamnosyl tetracyclic spinosyn pseudoaglycone

C44

rhamnosyl tricyclic spinosyn pseudoaglycone

C45

spinosyn tricyclic macrolactone

C46

11-dehydro-15-oxo spinosyn macrolactone

C47

15-oxo spinosyn macrolactone

C48

spinosyn macrolactone

C51

diethylamine N-oxide

C52

triethylamine N-oxide

C53

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

C55

nitroxyl

C57

trans,octacis-decaprenylphospho-β-D-arabinofuranose

C58

1,3-dihydro-2H-imidazol-2-one

C63

2-phenylethyl β-D-glucopyranoside

C64

formyl hopane

C65

ribosyl hopane

C66

adenosyl hopane

C70

(2Z)-2-hydroxypenta-2,4-dienoate

C72

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

C73

(2Z)-2,4-dihydroxypent-2-enoate

C75

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

C76

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

C77

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

C79

(+)-3'-hydroxylarreatricin

C80

(+)-larreatricin

C81

2-trans,4-trans-xanthoxin

C584

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C582

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

C1010

ammonia

C12274

enol-phenylpyruvate

C583

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C9431

1,2-dihydro-β-NADP

C585

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

C12848

N5-carboxyaminoimidazole ribonucleotide

C2470

sulfoethylcysteine

C14084

2-(sulfomethyl)thiazolidine-4-carboxylate

C13793

(2R,3S)-3-methylmalate

C1491

citraconate

C12351

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C567

2,5-diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one

C12368

(S)-2,3,4,5-tetrahydrodipicolinate

C13879

(R)-mevalonate diphosphate

C1018

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

C1108

acetyl phosphate

C12029

S-ribosyl-L-homocysteine

C12324

autoinducer 2

C13681

5-carboxymethyl-2-hydroxymuconate

C13650

deethylsimazine

C13649

N-ethylammeline

C1038

α-ribazole

C1036

α-ribazole 5'-phosphate

C11857

β-nicotinate D-ribonucleotide

C11715

quinolinate

C11606

thiamine phosphate

C11604

thiamine diphosphate

C11701

α-D-ribose 1,5-bisphosphate

C13811

tetrahydrogeranylgeranyl diphosphate

C13812

dihydrogeranylgeranyl diphosphate

C11964

(R)-mevalonate

C13985

(R)-5-phosphomevalonate

C7865

urea

C15075

4-(β-D-ribofuranosyl)hydroxybenzene 5'-phosphate

C13851

hydrogenobyrinate

C11710

(R)-4'-phosphopantothenoyl-L-cysteine

C12326

1-deoxy-L-glycero-tetrulose 4-phosphate

C11648

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

C12409

creatinine

C1353

3-phosphooxypyruvate

C13751

methanophenazine

C12331

dihydromethanophenazine

C12048

γ-L-glutamyl 5-phosphate

C14218

L-β-lysine

C10260

ADP-D-glycero-β-D-manno-heptose

C10261

ADP-L-glycero-β-D-manno-heptose

C1186

5-oxo-L-proline

C13850

hydrogenobyrinate a,c-diamide

C12364

isopentenyl diphosphate

C14074

prenyl diphosphate

C1020

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

C13729

(2S)-lactyl-2-diphospho-5'-guanosine

C12218

α-D-glucosamine 1-phosphate

C285

coenzyme B

C283

CoB-CoM heterodisulfide

C14202

hexulose 6-phosphate

C13728

7,8-didemethyl-8-hydroxy-5-deazariboflavin

C8938

oxalate

C11483

glycolate

C873

coproporphyrinogen III

C11946

N-(5-phosphoribosyl)-anthranilate

C1002

anthranilate

C9422

nicotinate adenine dinucleotide

C13689

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

C1363

(4,5-dihydro-5-oxofuran-2-yl)-acetate

C3829

5-amino-6-(5-phospho-D-ribitylamino)uracil

C10274

5-amino-6-(5-phospho-D-ribosylamino)uracil

C14436

pimelate

C13950

pimeloyl-CoA

C14924

carboxyphosphate

C6614

O-ureido-L-homoserine

C11802

4'-phosphopantetheine

C927

carbon monoxide

C11688

S-adenosyl 3-(methylsulfanyl)propylamine

C1196

S-methyl-5'-thioadenosine

C13786

(2S)-2-isopropyl-3-oxosuccinate

C506

3-ethylmalate

C3259

2-oxovalerate

C1621

(R)-2,3-dihydroxy-3-methylpentanoate

C12214

(S)-4-amino-5-oxopentanoate

C3850

5-amino-6-(D-ribitylamino)uracil

C12178

histidinal

C12176

histidinol

C1130

8-amino-7-oxononanoate

C3264

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

C12350

7,8-diaminopelargonate

C11760

prephenate

C1429

3-deoxy-D-arabino-heptulosonate 7-phosphate

C12369

3-dehydroquinate

C2191

carbamoyl phosphate

C3262

3-methyl-2-oxobutanoate

C3417

(S)-3-methyl-2-oxopentanoate

C3319

4-methyl-2-oxopentanoate

C14003

N-acetyl-L-glutamate 5-semialdehyde

C11930

N-acetylglutamyl-phosphate

C12139

preuroporphyrinogen

C10349

glycerone phosphate

C12390

D-erythro-imidazole-glycerol-phosphate

C1184

5-phospho-β-D-ribosylamine

C1180

N1-(5-phospho-β-D-ribosyl)glycinamide

C1172

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

C11654

selenophosphate

C12125

imidazole acetol-phosphate

C12044

L-histidinol phosphate

C1438

(2S)-2-isopropylmalate

C13417

2-isopropylmaleate

C1530

(2R,3S)-3-isopropylmalate

C12355

dethiobiotin

C6369

(S)-2-aceto-2-hydroxybutanoate

C6359

(S)-2-acetolactate

C11653

shikimate

C1431

3-dehydroshikimate

C12352

(S)-dihydroorotate

C11479

phosphoenolpyruvate

C11652

shikimate 3-phosphate

C1427

5-enolpyruvoyl-shikimate 3-phosphate

C1231

5-aminolevulinate

C11767

porphobilinogen

C11832

orotidine 5'-phosphate

C928

CO2

C6444

oxaloacetate

C11774

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

C11812

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

C1182

N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide

C1171

2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine

C12164

H2

C12056

L-arginino-succinate

C932

canavaninosuccinate

C933

L-canavanine

C11543

H2O

C7785

hypoxanthine

C7652

cyclic-AMP

C7823

dADP

C7783

dATP

C7817

IDP

C7759

ITP

C7747

dIDP

C7749

dITP

C7807

dGDP

C7751

dGTP

C5485

1-(5-phospho-β-D-ribosyl)-ATP

C7811

XMP

C7827

GMP

C7745

GTP

C7741

IMP

C10288

adenylo-succinate

C7795

GDP

C5552

5'-deoxyadenosine

C5489

1-(5-phospho-β-D-ribosyl)-AMP

C7809

AMP

C7844

ATP

C7757

ADP

C9444

2-sulfanyl-N6-dimethylallyladenosine37 in tRNA

C9443

2-methylsulfanyl-N6-dimethylallyladenosine37 in tRNA

C8760

UTP

C8761

CTP

C2245

CMP

C2241

UMP

C8732

CDP

C8714

UDP

C4243

β-nicotinamide D-ribonucleotide

C8752

dUDP

C8720

dTDP

C8733

dCDP

C8770

dUMP

C8744

dTMP

C8755

dCMP

C8764

dTTP

C8772

dCTP

C8724

dUTP

C14497

NADPH

C14500

NADH

C4018

NADP+

C4020

NAD+

C1009

GDP-α-D-mannose

C9882

ADP ribose 1'',2''-cyclic phosphate

C9888

ADP ribose 1''-phosphate

C9884

ADP-D-ribose

C9454

adenine

C8739

uracil

C10601

thymine

C7780

UDP-α-D-glucose

C8422

CDP-α-D-glucose

C7722

UDP-α-D-glucuronate

C7764

UDP-α-D-galacturonate

C7444

UDP-N-acetyl-α-D-glucosamine

C8433

CDP-4-dehydro-6-deoxy-α-D-glucose

C15088

adenosine

C2523

2'-deoxycytidine

C2527

2'-deoxyuridine

C2519

thymidine

C10612

tetrahydrosarcinapterin

C10617

5-methyl-tetrahydrosarcinapterin

C12629

coenzyme M

C10615

methyl-CoM

C10614

coenzyme A

C2232

oxidized coenzyme F420-0

C6003

guanylyl molybdenum cofactor

C6007

MoO2-molybdopterin cofactor

C6006

adenylyl molybdenum cofactor

C6000

bis(molybdenum cofactor)

C6009

bis(guanylyl molybdopterin) cofactor

C7134

tetrahydropteroyl tri-L-glutamate

C8566

5-methyltetrahydropteroyl tri-L-glutamate

C14627

5-formyl-tetrahydromethanopterin

C14603

tetrahydromethanopterin

C14615

N5-methyltetrahydromethanopterin

C14606

5,10-methenyltetrahydromethanopterin

C14624

5,10-methylene-tetrahydromethanopterin

C11481

orotate

C2323

precorrin-7

C2300

precorrin-5

C9799

cobalt-precorrin-2

C9871

cobalt-precorrin-5A

C2297

precorrin-8x

C2302

precorrin-3A

C9813

cobalt-precorrin-5B

C9818

cobalt-precorrin-6A

C2314

precorrin-3B

C2320

precorrin-4

C2317

precorrin-6B

C2308

precorrin-6A

C2305

precorrin-1

C2311

precorrin-2

C1705

sirohydrochlorin

C9861

cobyrinate

C5221

adenosylcobalamin

C1659

6,7-dimethyl-8-(1-D-ribityl)lumazine

C10053

FAD

C10052

FMN

C10988

riboflavin

C10049

FMNH2

C15044

reduced riboflavin

C12730

7,8-dihydroneopterin 3'-triphosphate

C5590

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

C6934

4-hydroxybenzoate

C8413

indole

C7694

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

C13166

2-amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

C8776

tyramine

C1869

caldariellaquinol

C1680

menaquinol-8

C1863

demethylmenaquinol-8

C10048

caldariellaquinone

C2040

diacetyl

C9494

D-glyceraldehyde

C3500

acetaldehyde

C3483

formaldehyde

C6246

(S)-lactaldehyde

C3450

ethanol

C13573

1D-myo-inositol 3-monophosphate

C2012

keto-D-fructose

C8835

β-D-fructofuranose

C3186

N-acetyl-α-D-glucosamine 1-phosphate

C973

D-ribulose-1,5-bisphosphate

C8811

α-D-glucopyranose 1-phosphate

C5615

D-glyceraldehyde 3-phosphate

C10350

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

C15289

D-sedoheptulose 7-phosphate

C10340

D-erythrose 4-phosphate

C10338

5-phospho-α-D-ribose 1-diphosphate

C10326

β-D-fructose 1,6-bisphosphate

C15303

D-fructose 6-phosphate

C2989

β-D-fructofuranose 6-phosphate

C2123

β-D-glucose 6-phosphate

C8704

D-xylulose 5-phosphate

C10604

D-ribulose 5-phosphate

C6715

aldehydo-D-ribose 5-phosphate

C2056

2-deoxy-α-D-ribose 1-phosphate

C8819

L-fuculose 1-phosphate

C2129

β-D-glucopyranose 1-phosphate

C2082

β-D-fructofuranose 1-phosphate

C8813

α-D-mannose 1-phosphate

C10688

maltotriose

C10689

maltotetraose

C10692

maltoheptaose

C10691

maltohexaose

C10690

maltopentaose

C6266

2,3-bis-O-phytanyl-sn-glycerol 1-phosphate

C6269

2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate

C5904

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

C4334

1-oleoyl-2-palmitoyl-phosphatidylglycerol

C9077

(2E,6E)-farnesyl diphosphate

C11012

phytyl diphosphate

C1993

di-trans,octa-cis-undecaprenol

C8322

di-trans,octa-cis-undecaprenyl phosphate

C5378

geranylgeranyl diphosphate

C1813

di-trans,octa-cis-undecaprenyl diphosphate

C4819

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

C4817

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

C8014

phosphoribulosylformimino-AICAR-phosphate

C8039

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

C8043

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

C8033

5-amino-4-imidazolecarboxyamide

C8025

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

C11517

acetate

C11510

5-chloro-5-deoxy-D-ribonate

C3536

L-α-amino-ε-keto-pimelate

C5032

carbamate

C12303

L-citrulline

C12237

L-canaline

C12239

L-aspartate 4-semialdehyde

C12247

L-homocysteine

C12245

L-homoserine

C12229

O-phospho-L-homoserine

C15292

S-adenosyl-L-methionine

C12203

S-adenosyl-L-homocysteine

C12231

L-ornithine

C5585

meso-diaminopimelate

C5584

L-lysine

C5603

L-isoleucine

C5588

L-leucine

C5571

L-valine

C5583

L-methionine

C5597

L-alanine

C5605

L-histidine

C5579

L-serine

C5577

L-threonine

C2469

L-phenylalanine

C12067

glycine

C5575

L-tryptophan

C5573

L-tyrosine

C5596

L-aspartate

C5609

L-glutamine

C5607

L-glutamate

C5642

L-arginine

C5612

L-cysteine

C11443

creatine

C11435

(R)-β-lysine

C5580

L,L-diaminopimelate

C12073

L-aspartyl-4-phosphate

C13322

N-carbamoyl-L-aspartate

C15000

N-acetyl-L-ornithine

C3402

3-phospho-L-serine

C14976

N-acetyl-L-methionine

C14973

N-acetyl-L-glutamate

C8950

chorismate

C6442

succinate

C6443

fumarate

C2802

(S)-malate

C3288

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

C3315

3-(4-hydroxyphenyl)pyruvate

C3345

3-phenyl-2-oxopropanoate

C3308

pyruvate

C3337

5-chloro-4-hydroxy-2-oxopentanoate

C3257

2-oxobutanoate

C3301

2-oxoglutarate

C3421

formate

C6186

(S)-lactate

C11476

(R)-glycerate

C803

ethylphosphate

C13422

hydrogen cyanide

C9853

adenosyl-cob(III)yrinate a,c-diamide

C9800

adenosylcobyrate

C9830

adenosylcobinamide-GDP

C1218

adenosylcobalamin 5'-phosphate

C9845

cobalt-sirohydrochlorin

C9811

cob(II)yrinate c-monoamide

C9865

Mg-protoporphyrin

C9828

cob(II)yrinate a,c-diamide

C7662

uroporphyrinogen-I

C7676

protoporphyrin IX

C7666

protoporphyrinogen IX

C7658

uroporphyrinogen-III

C7632

siroheme

C7121

oxygen

C6596

2-iminosuccinate

C11281

2-chloroacetate

C6437

3-phospho-D-glyceroyl-phosphate

C6425

2-phospho-D-glycerate

C6438

3-phospho-D-glycerate

C2155

(2S)-2-phospholactate

C2150

(2R)-2,3-dihydroxy-3-methylbutanoate

C6755

(R)-citramalate

C7864

Fe3+

C4328

ammonium

C4320

H+

C11007

Ni2+

C11009

Mg2+

C11006

Co2+

C11023

Fe2+

C11001

Mo2+

C7034

hydrogensulfite

C7024

thiosulfate

C7016

sulfite

C7022

selenide

C7036

hydrogencarbonate

C7030

nitrate

C6097

phosphate

C6094

triphosphate

C6093

diphosphate

C7006

chloride

C10301

agmatine

C3580

dehydrospermidine

C3548

putrescine

C3574

spermidine

C3978

thiocyanate

C12623

sulfoacetaldehyde

C12587

L-cysteate

C12637

3-sulfopyruvate

C2209

(2R)-3-sulfolactate

C7994

(2R)-phospho-3-sulfolactate

C5316

(R)-2-hydroxyglutaryl-CoA

C4927

(E)-glutaconyl-CoA

C5311

(S)-3-hydroxy-3-methylglutaryl-CoA

C4922

isobutanoyl-CoA

C4937

3'-dephospho-CoA

C4901

succinyl-CoA

C5314

2-methylacetoacetyl-CoA

C5298

acetyl-CoA

C1177

propanoyl-CoA

C2008

acetoacetyl-CoA

C2009

3-oxopentanoyl-CoA

C1235

methane

C4210

pyridoxal 5'-phosphate

C5394

(R)-NADHX

C5392

(S)-NADHX