an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

S-ribosyl-L-homocysteine

autoinducer 2

selenodiglutathione

glutathioselenol

hydrogen selenide

(S)-dihydroorotate

presqualene diphosphate

N-acetyl-D-muramate 6-phosphate

6-phospho D-glucono-1,5-lactone

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-dehydroshikimate

glutathione disulfide

2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one

L-histidinol phosphate

D-erythro-imidazole-glycerol-phosphate

imidazole acetol-phosphate

histidinal

histidinol

carboxynorspermidine

norspermidine

(S)-2-amino-6-oxohexanoate

carbonic acid

2-maleylacetate

nicotinate adenine dinucleotide

shikimate

2-dehydro-3-deoxy-D-gluconate

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N-acetylmuramoyl-L-ala-D-glu-(L)-meso-diaminopimelate -(L)-D-ala

N-acetylmuramoyl-L-ala-D-glu

1,4-dihydroxy-2-naphthoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

urea

urea-1-carboxylate

1,6-anhydro-N-acetyl-β-muramate

N-acetylglutamyl-phosphate

(R)-pantothenate

(R)-4'-phosphopantothenate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

N-carbamoylputrescine

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

3-phosphooxypyruvate

porphobilinogen

preuroporphyrinogen

selenophosphate

4,5-dihydroxyphthalate

15-cis-4,4'-diapophytoene

2-iminoacetate

quinolinate

N-acetyl-α-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol

ManNAc-GlcNAc-PP-undecaprenol

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

3-oxopropanoate

3-dehydroquinate

prephenate

N-(5-phosphoribosyl)-anthranilate

deethylsimazine

N-ethylammeline

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

acetyl phosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

citraconate

(2R,3S)-3-methylmalate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

7-carboxy-7-deazaguanine

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

hexulose 6-phosphate

N,N-dimethyl-1,4-phenylenediamine

orotidine 5'-phosphate

hydrogen peroxide

2-C-methyl-D-erythritol 4-phosphate

propanoyl phosphate

β-D-fructose 2,6-bisphosphate

ethanolamine

DNA without lesion

salicyl alcohol

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

L-selenocystathionine

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

glycolate

(lipoyl)adenylate

α-D-glucosamine 1-phosphate

anthranilate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-deoxy-D-glycero-2,5-hexodiulosonate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

L-canavanine

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

xanthine

2-dehydropantoate

γ-L-glutamyl 5-phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

succinate semialdehyde

glycerone phosphate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

D-gluconate 6-phosphate

dihydroxyacetone

carbamoyl phosphate

carboxyphosphate

isopentenyl diphosphate

coproporphyrinogen III

oxalosuccinate

oxaloacetate

citrate

phosphoenolpyruvate

3-deoxy-D-arabino-heptulosonate 7-phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

CO₂

H₂O

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

2-chloroacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

sulfate

selenite

molybdate

OH^-

superoxide

selenide

selenate

hydrogencarbonate

phosphonate

phosphate

triphosphate

diphosphate

chloride

Fe³⁺

H⁺

Na⁺

ammonium

Mg²⁺

Fe²⁺

Mn²⁺

Ni²⁺

Mo²⁺

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

sn-glycero-3-phosphoethanolamine

glycerophosphoglycerol

glycerophosphoserine

1-oleoyl-2-palmitoyl-phosphatidylglycerol

ferrichrome

glycine betaine

aniline

2-iminopropanoate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

S-(hydroxymethyl)glutathione

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

4,4'-diapolycopenedioate glycosyl diester

methylacrylyl-CoA

isobutanoyl-CoA

5-aminolevulinyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3'-dephospho-CoA

malonyl-CoA

succinyl-CoA

acetyl-CoA

phytenoyl-CoA

(S)-malyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

riboflavin

nicotinate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

FMN

FAD

FADH₂

caldariellaquinone

caldariellaquinol

demethylmenaquinol-8

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

adenosine 2',3'-cyclic monophosphate

guanosine 2',3'-cyclic monophosphate

isoguanine

8-oxo-dGTP

8-oxo-GTP

1-(5-phospho-β-D-ribosyl)-AMP

dAMP

dGMP

pppGpp

ppGpp

GMP

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

XMP

2'-deoxyinosine

2'-deoxyguanosine

hypoxanthine

2'-deoxyadenosine

IMP

adenylo-succinate

IDP

ITP

dIDP

dITP

dATP

dADP

dGTP

dGDP

ADP

GTP

GDP

ATP

AMP

guanosine 3'-monophosphate

adenosine 3'-monophosphate

inosine

xanthosine

adenosine

guanosine

cytidine

uridine

thymidine

2'-deoxycytidine

2'-deoxyuridine

uridine 2'3'-cyclic monophosphate

cytidine 2',3'-cyclic monophosphate

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dUDP

dCDP

CDP

UDP

β-nicotinamide D-ribonucleotide

cytidine-3'-monophosphate

uridine 3'-monophosphate

ADP-α-D-glucose

thymine

uracil

adenine

guanine

preQ₁

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-mannosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-4-dehydro-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

CMP-N-acetyl-β-neuraminate

molybdopterin

(R)-lipoate

coenzyme A

MoO₂-molybdopterin cofactor

(S)-1-pyrroline-5-carboxylate

6,7-dimethyl-8-(1-D-ribityl)lumazine

molybdopterin adenine dinucleotide

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

cyclic pyranopterin phosphate

7,8-dihydroneopterin 3'-triphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

6-carboxy-5,6,7,8-tetrahydropterin

orotate

adenosylcobalamin

cob(I)alamin

baicalein

6,7-dehydrobaicalein

urate

hydroquinone

protocatechuate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

4-methylphenol

2,5-piperidinedione

methylglyoxal

diacetyl

D-glyceraldehyde

α-D-ribofuranose

α-D-xylopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

β-D-galactopyranose

α-D-galactopyranose

butan-1-al

formaldehyde

acetaldehyde

(S)-lactaldehyde

1D-chiro-inositol

scyllo-inositol

myo-inositol

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1-keto-D-chiro-inositol

scyllo-inosose

butan-1-ol

ethanol

methanol

glycerol

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

N-acetyl-α-D-glucosamine

N-acetyl-β-neuraminate

D-xylulose

D-ribulose

L-ribulose

keto-D-fructose

β-D-fructofuranose

L-fuculose

keto-L-rhamnulose

β-L-fucopyranose

α-L-fucopyranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

methyl β-D-glucoside 6-phosphate

salicin 6-phosphate

arbutin-6-phosphate

daunorubicin

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

decaprenyl-pyrophosphoryl-(N-acetylglucosamine)-N-acetylmuramyl-(pentapeptide)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

aldehydo-D-galacturonate

unsaturated gellan tetrasaccharide

raffinose

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

stachyose

sucrose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

D-mannonate

D-gluconate

D-altronate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

all-trans-4,4'-diapolycopene

4,4'-diapolycopen-4,4'-dial

all-trans-4,4'-diapophytofluene

all-trans-4,4'-diapo-ζ-carotene

all-trans-4,4'-diaponeurosporene

geranyl diphosphate

(-)-cuparene

(-)-α-cuprenene

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-octaprenyl-4-hydroxybenzoate

iron(III) dicitrate

betanidin

betanidin quinone

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

pyruvate

acetate

formate

(R)-lactate

7-hydroxylaurate

laurate

decanoate

octanoate

(R)-glycerate

(15Z)-tetracosenoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

linoleate

α-linolenate

stearate

palmitate

oleate

8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoate

dinor-12-oxo-phytodienoate

phytenate

(R)-pantoate

5-deoxy-D-glucuronate

D-tagaturonate

carbamate

D-glutamate

D-alanine

L-histidine

L-tyrosine

L-tryptophan

L-phenylalanine

L,L-diaminopimelate

L-isoleucine

L-leucine

L-proline

L-lysine

L-arginine

L-ornithine

L-valine

L-serine

L-asparagine

L-glutamine

L-glutamate

L-alanine

L-aspartate

L-aspartyl-4-phosphate

L-threonine

L-cystathionine

L-methionine

L-cysteine

N-carbamoyl-L-aspartate

L-saccharopine

seleno-L-homocysteine

L-selenomethionine

3-phospho-L-serine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

L-citrulline

L-canaline

S-adenosyl-L-homocysteine

L-homoserine

S-adenosyl-L-methionine

L-homocysteine

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

O-phospho-L-homoserine

O-succinyl-L-homoserine

meso-diaminopimelate

glycine

β-alanine

(S)-3-amino-2-methylpropanoate

4,4'-diapolycopenedioate

chorismate

fumarate

succinate

(S)-malate

α,ω-9Z-octadecenedioate

3-carboxy-cis,cis-muconate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

meso-diaminopimeloyl-alanine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

DNA with lesion

ethylphosphate

Mg-protoporphyrin

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

protoheme

protoporphyrin IX

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

oxygen

2-iminosuccinate

2-iminobutanoate

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

4-dimethylaminophenylazobenzene

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

preQ₀