an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

S-methyl-5-thio-α-D-ribose 1-phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

2-chloro-4-methyl-cis,cis-muconate

4-methylmuconolactone

4-chloro-2-methyl-cis,cis-muconate

carboxyphosphate

urea

S-Inosyl-L-homocysteine

nicotinate adenine dinucleotide

2-iminoacetate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

carbon monoxide

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

thiamine phosphate

hydrogen peroxide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

acetyl phosphate

pimeloyl-CoA

7-carboxy-7-deazaguanine

DNA without lesion

(lipoyl)adenylate

xanthine

2-dehydropantoate

5-aminolevulinate

porphobilinogen

3-dehydroquinate

3-dehydroshikimate

coenzyme B

methanophenazine

CoB-CoM heterodisulfide

dihydromethanophenazine

D-erythro-imidazole-glycerol-phosphate

histidinal

histidinol

5-phospho-β-D-ribosylamine

N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

orotidine 5'-phosphate

coproporphyrinogen III

dethiobiotin

4-imidazolone-5-propanoate

urocanate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(3S,5S)-3,5-diaminohexanoate

(S)-5-amino-3-oxohexanoate

L-β-lysine

acetoacetate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

carbamoyl phosphate

phosphoenolpyruvate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

oxaloacetate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

butanoyl phosphate

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

β-nicotinate D-ribonucleotide

quinolinate

3-methyl-2-oxobutanoate

CO₂

glycerone phosphate

H₂O

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

aminoacetone

4-oxoglutaramate

lipid X

lipid A disaccharide (E. coli)

lipid IV_A

imidazole acetol-phosphate

L-histidinol phosphate

2-amino-3-carboxymuconate-6-semialdehyde

2-maleylacetate

(S)-dihydroorotate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(R)-4'-phosphopantothenate

(R)-pantothenate

formamide

glutathione disulfide

3-phosphooxypyruvate

4-aminobutanoate

5-amino-6-(5-phospho-D-ribitylamino)uracil

5-amino-6-(5-phospho-D-ribosylamino)uracil

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

L-arginino-succinate

canavaninosuccinate

L-canavanine

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

O-ureido-L-homoserine

poly (glycerol phosphate)

CDP-glycerol

S-ribosyl-L-homocysteine

autoinducer 2

(indol-3-yl)pyruvate

(indol-3 yl)acetyl-CoA

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

1,6-anhydro-N-acetyl-β-muramate

thiamine diphosphate

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

Mg-protoporphyrin

adenosylcobinamide

adenosyl-cobinamide phosphate

protoheme

uroporphyrinogen-III

protoporphyrin IX

protoporphyrinogen IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ω-saturated C55 dolichol phosphate

α-D-glucosamine 6-phosphate

CMP-N-acetyl-β-neuraminate

preQ₀

(indole-3-yl)acetonitrile

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

3-chloro-cis,cis-muconate

2,5-dichloro-4-methyl-muconolactone

2-chloro-2-(2-chloro-5-oxofuran-2-yl)acetate

2,3-dichloro-cis,cis-muconate

3,5-dichloro-2-methyl-muconolactone

2,5-dichloro-3-methyl-muconate

3,6-dichloro-3a-methyl-dihydro-3H-furo[3,2-b]furan-2,5-dione

2,5-dichloro-3-methyl-muconolactone

(+)-5-chloromuconolactone

2-(2,4-dichloro-5-oxofuran-2-yl)propanoate

3,5-dichloro-2-methyl-muconate

2-chloro-2-(2-chloro-4-methyl-5-oxofuran-2-yl)acetate

2,3-dichloro-5-methyl-muconate

(+)-2-chloromuconolactone

2-chloro-cis,cis-muconate

5-chloro-2-methyl-dienelactone

5-chloro-2-methyl-maleylacetate

2-chloro-3-methyl-dienelactone

2-chloro-3-methyl-maleylacetate

2-chloro-5-methyl-dienelactone

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

5-chloromaleylacetate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

(1R,2S)-3,4-dichloro-6-methylcyclohexa-3,5-diene-1,2-diol

3,4-dichloro-6-methylcatechol

3,4-dichlorotoluene

5-chloro-3-methylcatechol

3,6-dichloro-4-methylcatechol

(1R,2S)-3,6-dichloro-4-methylcyclohexa-3,5-diene-1,2-diol

2,5-dichlorotoluene

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

4,6-dichloro-3-methylcatechol

4,5-dichlorobenzene-1,2-diol

Fe³⁺

H⁺

ammonium

Mg²⁺

Fe²⁺

hydrogencarbonate

superoxide

OH^-

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

pristanate

2-aminoprop-2-enoate

agmatine

dehydrospermidine

spermidine

putrescine

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

coenzyme M

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

5-chloro-3-methyl-cis-dienelactone

2-chloro-4-methyl-cis-dienelactone

2-(2-chloro-4-methyl-5-oxofuran-2-yl)acetate

cis-dienelactone

2-methyl-trans-dienelactone

2-methyl-cis-dienelactone

5-chloro-trans-dienelactone

linoleoyl-CoA

α-linolenoyl-CoA

(E)-glutaconyl-CoA

CoA-disulfide

(S)-3-aminobutanoyl-CoA

succinyl-CoA

isobutanoyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

4-hydroxybutanoyl-CoA

(R)-2-hydroxyglutaryl-CoA

3'-dephospho-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

butanoyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

5-α-pregnane-3,20-dione

4,5α-dihydrocortisone

cortisone

coprostanone

cholest-4-en-3-one

progesterone

chenodeoxycholate

cholate

7-oxolithocholate

17-β-hydroxy-5-α-androstan-3-one

testosterone

(indol-3-yl)acetate

riboflavin

nicotinate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

pyridoxal

pyridoxal 5'-phosphate

pyridoxine

pyridoxine 5'-phosphate

pyridoxamine

pyridoxamine 5'-phosphate

menadione

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADPH

NADH

NADP⁺

NAD⁺

caldariellaquinone

caldariellaquinol

dGTP

dGDP

dATP

dADP

hypoxanthine

GMP

5'-deoxyadenosine

GTP

GDP

adenylo-succinate

AMP

IMP

XMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ATP

ADP

isoguanine

8-oxo-dGTP

8-oxo-GTP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

pppGpp

ppGpp

xanthosine

guanosine

inosine

adenosine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dUTP

dCTP

UTP

CTP

dUMP

dTMP

UMP

CMP

dCDP

dUDP

dTDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

preQ₁

uracil

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-α-D-galactose

UDP-α-D-glucuronate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-1

precorrin-2

precorrin-3B

precorrin-4

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

(7,8-dihydropterin-6-yl)methyl diphosphate

7,8-dihydropteroate

6-carboxy-5,6,7,8-tetrahydropterin

orotate

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

protocatechuate

menadiol

4-aminobenzoate

methylglyoxal

acetaldehyde

D-glyceraldehyde

ethanol

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

β-D-fructofuranose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^G-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

β-D-glucose 6-phosphate

α-D-glucose 6-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

3-methyl-cis,cis-muconate

succinate

L-aspartate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

3-carboxy-cis,cis-muconate

3-oxoadipate

3-phenyl-2-oxopropanoate

pyruvate

2-oxoglutarate

glyoxylate

2-oxobutanoate

acetate

formate

propanoate

(R)-lactate

butanoate

7-hydroxylaurate

laurate

octanoate

decanoate

4-hydroxybutanoate

(15Z)-tetracosenoate

linoleate

α-linolenate

stearate

palmitate

oleate

phytenate

(R)-pantoate

carbamate

L-serine

L-threonine

L-asparagine

L-glutamine

glycine

L-cysteine

L-tyrosine

L-arginine

L-histidine

L-lysine

L-glutamate

L-leucine

L-alanine

L-phenylalanine

L-tryptophan

L-methionine

(R)-β-lysine

β-alanine

D-glutamate

D-alanine

L-ornithine

L-isoglutamine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-ornithine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-acetyl-L-glutamate

L-citrulline

S-adenosyl-L-homocysteine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

L-canaline

meso-diaminopimelate

D-alanyl-D-alanine