an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

ammonia

enol-phenylpyruvate

1,2-dihydro-β-NADP

1-piperideine 6-carboxylate

4-oxoglutaramate

1,4-dihydroxy-2-naphthoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

α-D-glucosamine 1-phosphate

1,6-anhydro-N-acetyl-β-muramate

glutathione disulfide

(S)-dihydroorotate

formamide

5-phospho-β-D-ribosylamine

imidazole acetol-phosphate

β-nicotinate D-ribonucleotide

nicotinate adenine dinucleotide

L-histidinol phosphate

2-isopropylmaleate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

L-β-lysine

5-amino-6-(D-ribitylamino)uracil

4-imidazolone-5-propanoate

urocanate

carboxyphosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

carbonic acid

orotidine 5'-phosphate

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

2-maleylacetate

L-gulono-1,4-lactone

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

N¹-(5-phospho-β-D-ribosyl)glycinamide

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

shikimate

3-dehydroshikimate

carboxynorspermidine

norspermidine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

D-erythro-imidazole-glycerol-phosphate

histidinal

histidinol

6-phospho D-glucono-1,5-lactone

carbamoyl phosphate

(S)-2-amino-6-oxohexanoate

N-acetyl-D-muramate 6-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

3-phosphooxypyruvate

pimeloyl-CoA

8-amino-7-oxononanoate

acetyl phosphate

xanthine

thiamine phosphate

glycolate

coproporphyrinogen III

quinolinate

4-methyl-2-oxopentanoate

(S)-2,3,4,5-tetrahydrodipicolinate

2-dehydro-3-deoxy-D-gluconate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

prephenate

quercitrin

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate

2-chloro-4-methyl-cis,cis-muconate

4-methylmuconolactone

4-chloro-2-methyl-cis,cis-muconate

2-succinylbenzoate

DNA without lesion

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

aminoacetone

hydrogen peroxide

glycerone phosphate

3-methyl-2-oxobutanoate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

5-dehydro-D-gluconate

3-deoxy-D-glycero-2,5-hexodiulosonate

D-gluconate 6-phosphate

oxaloacetate

phosphoenolpyruvate

(R)-pantothenate

(R)-4'-phosphopantothenate

oxalosuccinate

CO₂

citrate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

H₂O

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

DNA with lesion

L-homocysteine

ethylphosphate

Mg-protoporphyrin

protoheme

uroporphyrinogen-III

protoporphyrinogen IX

protoporphyrin IX

oxygen

hydrogen sulfide

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ω-saturated C55 dolichol phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

preQ₀

4-nitrophenol

p-nitrophenyl-α-L-rhamnopyranoside

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-2-methyl-dienelactone

5-chloro-2-methyl-maleylacetate

2-chloro-3-methyl-dienelactone

2-chloro-3-methyl-maleylacetate

2-chloro-5-methyl-dienelactone

2-chloro-5-methyl-maleylacetate

3-chloro-2-methyl-dienelactone

3-chloro-2-methyl-maleylacetate

5-chloromaleylacetate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

3-chloro-cis,cis-muconate

2,5-dichloro-4-methyl-muconolactone

2-chloro-2-(2-chloro-5-oxofuran-2-yl)acetate

2,3-dichloro-cis,cis-muconate

3,5-dichloro-2-methyl-muconolactone

2,5-dichloro-3-methyl-muconate

3,6-dichloro-3a-methyl-dihydro-3H-furo[3,2-b]furan-2,5-dione

2,5-dichloro-3-methyl-muconolactone

(+)-5-chloromuconolactone

2-(2,4-dichloro-5-oxofuran-2-yl)propanoate

3,5-dichloro-2-methyl-muconate

2-chloro-2-(2-chloro-4-methyl-5-oxofuran-2-yl)acetate

2,3-dichloro-5-methyl-muconate

(+)-2-chloromuconolactone

2-chloro-cis,cis-muconate

(1R,2S)-3,4-dichloro-6-methylcyclohexa-3,5-diene-1,2-diol

3,4-dichloro-6-methylcatechol

3,4-dichlorotoluene

5-chloro-3-methylcatechol

3,6-dichloro-4-methylcatechol

(1R,2S)-3,6-dichloro-4-methylcyclohexa-3,5-diene-1,2-diol

2,5-dichlorotoluene

2,4-dichlorotoluene

(1R,2S)-4,6-dichloro-3-methylcyclohexa-3,5-diene-1,2-diol

4,6-dichloro-3-methylcatechol

4,5-dichlorobenzene-1,2-diol

Fe³⁺

Na⁺

H⁺

ammonium

Fe²⁺

Mg²⁺

OH^-

superoxide

hydrogencarbonate

phosphonate

phosphate

diphosphate

chloride

hydroxyl radical

pristanate

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

cadaverine

S-(hydroxymethyl)glutathione

glutathione

methanethiol

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

(R)-S-lactoylglutathione

2-methyl-trans-dienelactone

2-methyl-cis-dienelactone

5-chloro-trans-dienelactone

cis-dienelactone

trans-dienelactone

5-chloro-3-methyl-cis-dienelactone

2-chloro-4-methyl-cis-dienelactone

2-(2-chloro-4-methyl-5-oxofuran-2-yl)acetate

D-glucono-1,5-lactone

linoleoyl-CoA

α-linolenoyl-CoA

3'-dephospho-CoA

(E)-glutaconyl-CoA

malonyl-CoA

acetyl-CoA

succinyl-CoA

isobutanoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(S)-malyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

decanoyl-CoA

lauroyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

glycocholate

cholate

riboflavin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

isoguanine

8-oxo-dGTP

8-oxo-GTP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

dIDP

dITP

IDP

ITP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

5'-deoxyadenosine

GMP

dGTP

dATP

dADP

dGDP

adenylo-succinate

IMP

XMP

AMP

GTP

GDP

ATP

ADP

xanthosine

guanosine

inosine

adenosine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dTMP

dUMP

CMP

UMP

dTDP

dUDP

dCDP

CDP

UDP

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

preQ₁

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-6B

precorrin-6A

precorrin-3B

precorrin-4

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-triphosphate

orotate

hesperidin

naringin

prunin

hesperitin-7-O-β-D-glucoside

quercetin

quercetin-3-glucoside

rutin

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

phenol

2,3-dihydroxybenzoate

diacetyl

methylglyoxal

formaldehyde

acetaldehyde

(S)-lactaldehyde

D-glyceraldehyde

α-L-rhamnopyranose

β-L-rhamnopyranose

α-D-galactopyranose

ethanol

methanol

D-sorbitol 6-phosphate

5-dehydro-4-deoxy-D-glucuronate

aldehydo-D-galacturonate

unsaturated gellan tetrasaccharide

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

D-ribulose

L-ribulose

β-D-fructofuranose

L-fuculose

keto-L-rhamnulose

β-L-fucopyranose

α-L-fucopyranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

sucrose 6^G-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

L-fuculose 1-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

keto-L-sorbose 1-phosphate

β-D-fructofuranose 1-phosphate

L-idonate

D-altronate

L-gulonate

D-gluconate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

3-methyl-cis,cis-muconate

succinate

fumarate

L-aspartate

(S)-malate

α,ω-9Z-octadecenedioate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-phenyl-2-oxopropanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

acetate

formate

(R)-lactate

decanoate

7-hydroxylaurate

laurate

octanoate

(15Z)-tetracosenoate

linoleate

α-linolenate

stearate

palmitate

oleate

phytenate

D-tagaturonate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

L-tyrosine

L-asparagine

glycine

L-threonine

L-glutamine

L-histidine

L-lysine

L-glutamate

L-alanine

L-isoleucine

L-valine

L-leucine

L-phenylalanine

L-tryptophan

L-methionine

(R)-β-lysine

D-glutamate

D-alanine

L-isoglutamine

L-ornithine

L,L-diaminopimelate

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

formyl-L-isoglutamine

N-formimino-L-glutamate

L-saccharopine

L-2-amino-3-oxobutanoate

3-phospho-L-serine

O-acetyl-L-homoserine

L-homoserine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-aspartate 4-semialdehyde

meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine