an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(3E)-2-oxopent-3-enoate

(2E)-2-hydroxypenta-2,4-dienoate

5,6-dihydroxyindole

ammonia

enol-phenylpyruvate

S-(hydroxymethyl)mycothiol

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

4-oxoglutaramate

isopropylamine

selenodiglutathione

glutathioselenol

1-pyrroline

S-ribosyl-L-homocysteine

autoinducer 2

L-dopachrome

3-maleylpyruvate

(salicyl)adenylate

formamide

glutathione disulfide

5-aminopentanoate

(2R,4S)-2, 4-diaminopentanoate

(2R)-2-amino-4-oxopentanoate

1-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

1-(2-amino-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol

(2E,4Z)-4-hydroxy-6-oxohexa-2,4-dienoate

2-amino-3-carboxymuconate-6-semialdehyde

hydrogen selenide

12α-hydroxy-3-oxochol-4-en-24-oyl-CoA

12α-hydroxy-3-oxochol-4,6-dien-24-oyl-CoA

7α,12α-dihydroxy-3-oxochol-4-en-24-oyl-CoA

3-oxo-5,6-didehydrosuberyl-CoA semialdehyde

3-oxo-5,6-didehydrosuberyl-CoA

2-oxepin-2(3H)-ylideneacetyl-CoA

2-oxopent-4-enoate

3-phenylpropanoate

3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate

(2E)-3-(5,6-dihydroxycyclohexa-1,3-dien-1-yl)prop-2-enoate

tetrahydrogeranylgeranyl diphosphate

dihydrogeranylgeranyl diphosphate

dethiobiotin

benzoylsuccinyl-CoA

urea-1-carboxylate

(R)-4'-phosphopantothenoyl-L-cysteine

carboxyphosphate

shikimate

N-acetylglutamyl-phosphate

(2S)-4-acetamido-2-aminobutanoate

ectoine

(S)-2,3,4,5-tetrahydrodipicolinate

6-phospho D-glucono-1,5-lactone

D-gluconate 6-phosphate

DNA without lesion

3-oxocholoyl-CoA

allopregnanolone

deoxycholoyl-CoA

12α-hydroxy-3-oxocholan-24-oyl-CoA

D-erythro-imidazole-glycerol-phosphate

histidinal

methylamine

N-ethylglycine

2-iminoacetate

L-selenocystathionine

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

2-dehydropantoate

(24E)-3α,7α-dihydroxy-5β-cholest-24-enoyl-CoA

(24R,25R)-3α,7α,24-trihydroxy-5β-cholestanoyl CoA

γ-L-glutamyl 5-phosphate

5-amino-5-deoxy-3-dehydroshikimate

3-amino-5-hydroxybenzoate

2-phosphoglycolate

3-deoxy-D-arabino-heptulosonate 7-phosphate

methylsalicylate

5-dehydro-2-deoxy-D-gluconate

4-guanidinobutanoate

(2-hydroxyphenyl)acetate

(2S)-lactyl-2-diphospho-5'-guanosine

(4-hydroxyphenyl)acetate

5-amino-6-(D-ribitylamino)uracil

7,8-didemethyl-8-hydroxy-5-deazariboflavin

oxalate

pimelate

pimeloyl-CoA

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

carbonic acid

N-acetyl-D-muramate 6-phosphate

4-hydroxy-2-nonenal

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

1-O-(2-acetamido-2-deoxy-α-D-glucopyranosyl)-1D-myo-inositol 3-phosphate

β-D-ribosylnicotinate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N¹-(5-phospho-β-D-ribosyl)glycinamide

ethanolamine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

carbon monoxide

2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

2-(α-hydroxyethyl)thiamine diphosphate

orotidine 5'-phosphate

N-Formyl-L-kynurenine

β-nicotinate D-ribonucleotide

quinolinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

porphobilinogen

β-D-fructose 2,6-bisphosphate

5-methylcytosine

4-fumaryl-acetoacetate

prephenate

glutathionylspermidine

1,6-anhydro-N-acetyl-β-muramate

xanthine

5-oxo-L-proline

histidinol

S-adenosyl 3-(methylsulfanyl)propylamine

acetyl phosphate

3-phosphooxypyruvate

N-carbamoylputrescine

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

citraconate

(2R,3S)-3-methylmalate

thiamine phosphate

thiamine diphosphate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-oxopropanoate

shikimate 3-phosphate

5-enolpyruvoyl-shikimate 3-phosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoate

3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-succinylbenzoate

coproporphyrinogen III

3'-phosphoadenylyl-sulfate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(S)-5-hydroxyisourate

2-C-methyl-D-erythritol 4-phosphate

(S)-ureidoglycolate

4-methyl-3-oxoadipate-enol-lactone

4-methyl-3-oxoadipate

D-phenylhydantoin

N-carbamoyl-D-phenylglycine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

(indol-3-yl)acetamide

4-prenylphlorisobutyrophenone

3-(O-geranylgeranyl)-sn-glycerol 1-phosphate

salicyl alcohol

dimethylamine

(S)-2-amino-6-oxohexanoate

squalene

hop-22(29)-ene

acrylate

3-hydroxypropanoate

2-maleylacetate

S-Inosyl-L-homocysteine

hydrogen peroxide

L-canavanine

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

nicotinate adenine dinucleotide

2-hydroxy-cyclohexane-1-carbonyl-CoA

2-ketocyclohexane-1-carbonyl-CoA

glycolate

prenyl diphosphate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

aminoacetone

urea

8-amino-7-oxononanoate

S-adenosyl-4-methylsulfanyl-2-oxobutanoate

7,8-diaminopelargonate

acetoacetate

1-deoxy-L-glycero-tetrulose 4-phosphate

(S)-dihydroorotate

3-dehydroquinate

3-dehydroshikimate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

N-acetyl-L-glutamate 5-semialdehyde

poly(ribitol phosphate)

O-D-alanyl-poly(ribitol phosphate)

homogentisate

4-maleyl-acetoacetate

anthranilate

N-(5-phosphoribosyl)-anthranilate

imidazole acetol-phosphate

L-histidinol phosphate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

isopentenyl diphosphate

preuroporphyrinogen

4-imidazolone-5-propanoate

urocanate

α-D-glucosamine 1-phosphate

(E)-3-(methoxycarbonyl)pent-2-enedioate

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-phospho-β-D-ribosylamine

4-amino-4-deoxychorismate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(R)-pantothenate

(R)-4'-phosphopantothenate

oxalosuccinate

oxaloacetate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

succinate semialdehyde

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

4-methyl-2-oxopentanoate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

glycerone phosphate

4'-phosphopantetheine

4-aminobutanoate

carbamoyl phosphate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

citrate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

CO₂

tartronate semialdehyde

hydroxyatrazine

N-isopropylammelide

ethylamine

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

phosphoenolpyruvate

H₂O

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

4-methylphenol

L-homocysteine

phenylacetate

ethylphosphate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

Mg-protoporphyrin

cob(II)yrinate c-monoamide

cobyrinate

adenosyl-cobinamide phosphate

cobalt-precorrin-6B

cobalt-precorrin-5B

cobalt-precorrin-6A

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

adenosylcobinamide

cob(II)yrinate a,c-diamide

protoheme

protoporphyrinogen IX

protoporphyrin IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

oxygen

hydrogen sulfide

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

2-O-(α-D-glucopyranosyl)-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

CMP-N-acetyl-β-neuraminate

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-3-hydroxy-isobutanoate

(S)-2-hydroxyglutarate

acrylonitrile

3-chloro-4-(3-chloro-2-nitrosophenyl)-1H-pyrrole

N-[2-chloro-6-(4-chloro-1H-pyrrol-3-yl)phenyl]hydroxylamine

pyrrolnitrin

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

bromochloromethane

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

aminopyrrolnitrin

7-chloro-L-tryptophan

monodechloroaminopyrrolnitrin

Fe³⁺

ammonium

K⁺

H⁺

Mg²⁺

Fe²⁺

Co²⁺

sulfate

hydrogensulfite

selenite

OH^-

hydrogencarbonate

superoxide

thiosulfate

sulfite

selenate

phosphate

triphosphate

diphosphate

bromide

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

pristanate

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

glycine betaine

betaine aldehyde

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

4-aminobutanal

spermidine

cadaverine

putrescine

S-(hydroxymethyl)glutathione

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

S-methyl-L-methionine

deacetylmycothiol

mycothiol

thiocyanate

glutathione

S-sulfanylglutathione

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

3-sulfino-L-alanine

trans,octacis-decaprenylphospho-β-D-ribofuranose 5-phosphate

ergosteryl oleate

lanosteryl oleate

all-trans-retinyl palmitate

cis-dienelactone

trans-dienelactone

2-methylbutanoyl-CoA

acryloyl-CoA

benzoyl-CoA

choloyl-CoA

(24R,25R)-3α,7α,12α,24-tetrahydroxy-5β-cholestanoyl CoA

(24E)-3α,7α,12α-trihydroxy-5β-cholest-24-enoyl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

(+)-7-epi-jasmonoyl-CoA

malonyl-CoA

phenylacetyl-CoA

isobutanoyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

salicyl-CoA

gentisyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

3-hydroxypropanoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

(3E)-undec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-tetradec-3-enoyl-CoA

3'-dephospho-CoA

succinyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

2-methylacetoacetyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

phytenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

18-hydroxylinoleoyl-CoA

7-hydroxylauroyl-CoA

18-hydroxystearoyl-CoA

16-hydroxypalmitoyl-CoA

18-hydroxyoleoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(Z)-15-tetracosenoyl-CoA

propanoyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

cis-vaccenoyl-CoA

myristoyl-CoA

palmitoleoyl-CoA

stearoyl-CoA

palmitoyl-CoA

pristanoyl-CoA

3-oxoadipyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

5-α-pregnane-3,20-dione

cholest-4-en-3-one

(25S)-3-oxocholest-4-en-26-oate

(25S)-3-oxocholest-4-en-26-oyl-CoA

lanosterol

deoxycholate

cholate

3-dehydrocholate

brassicasterol 3-O-β-D-glucoside

β-sitosterol 3-O-β-D-glucoside

cholesteryl-β-D-glucoside

ergosterol 3-O-β-D-glucoside

solasodine 3-O-β-D-glucoside

stigmasterol 3-O-β-D-glucoside

androsterone

5β-cholestane-3α,7α,12α-triol

5β-cholestane-3α,7α-diol

5-α-androstan-3α,17β-diol

solasodine

cholesterol

cholest-5-en-3-one

ergosterol

17-β-hydroxy-5-α-androstan-3-one

campest-4-en-3β-ol

7α,12α-dihydroxy-5β-cholestan-3-one

7α-hydroxy-5β-cholestan-3-one

androst-4-ene-3,17-dione

campest-4-en-3-one

5α-androstane-3,17-dione

testosterone

(+)-7-epi-jasmonate

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

nicotinate

riboflavin

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

menadione

δ-tocotrienol

β-tocotrienol

γ-tocotrienol

α-tocotrienol

γ-tocopherol

α-tocopherol

δ-tocopherol

β-tocopherol

FADH₂

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

menaquinol-8

demethylmenaquinol-8

isoguanine

8-oxo-GTP

8-oxo-GMP

pppGpp

dIDP

dITP

ppGpp

dAMP

cyclic-GMP

8-oxo-dGTP

8-oxo-dGMP

hypoxanthine

cyclic-AMP

2'-deoxyguanosine

dGMP

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

2'-deoxyadenosine

2'-deoxyinosine

5'-deoxyadenosine

adenylo-succinate

IMP

XMP

GMP

ITP

IDP

dATP

dGTP

GTP

dADP

dGDP

GDP

ADP

ATP

AMP

5-fluorocytosine

5-fluorouracil

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

5-hydroxy-CMP

dCTP

dUTP

dTTP

CTP

UTP

dCMP

dUMP

dTMP

UMP

CMP

dTDP

dUDP

dCDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-α-D-glucose

GDP-α-D-mannuronate

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

ADP-α-D-glucose

N¹-ethyladenine

N3-methylcytosine

N¹-methyladenine

uracil

thymine

cytosine

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

CDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-glucuronate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-4-O-demethyl-β-L-noviose

dTDP-4-dehydro-5-methyl-β-L-rhamnose

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

coenzyme A

oxidized coenzyme F₄₂₀-0

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-6A

precorrin-3A

precorrin-1

precorrin-2

precorrin-3B

precorrin-4

precorrin-5

precorrin-6B

precorrin-7

precorrin-8x

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

7,8-dihydropteroate

orotate

cyanuric acid

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

4-hydroxyacetophenone

futalosine

dehypoxanthine futalosine

urate

atrazine

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

hydroquinone

2,3-dihydroxybenzoate

protocatechuate

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

L-dopa

dimeric urushiol peroxide

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

menadiol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

3-hydroxy-trans-cinnamate

2,3-dihydroxy-trans-cinnamate

trans-cinnamate

salicylate

4-aminobenzoate

diacetyl

acetone

dopaquinone

methylglyoxal

formaldehyde

acetaldehyde

D-glyceraldehyde

α-D-ribofuranose

α-D-glucopyranose

β-D-glucopyranose

β-D-galactopyranose

α-D-galactopyranose

methanol

ethanol

glycerol

myo-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1D-myo-inositol 4-monophosphate

1D-myo-inositol 2-monophosphate

1D-myo-inositol 6-monophosphate

1D-myo-inositol 5-monophosphate

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

maltotriose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

α,α-trehalose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-α-D-mannosamine

N-acetyl-β-D-mannosamine

N-acetyl-β-D-glucosamine

D-xylulose

D-ribulose

L-ribulose

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

N,N'-diacetylchitobiose 6'-phosphate

N-monoacetylchitobiose 6'-phosphate

α,α-trehalose 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

salicin 6-phosphate

arbutin-6-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

α-D-glucose 6-phosphate

β-D-glucose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

α-D-galactose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

methyl β-D-glucoside 6-phosphate

D-gluconate

6-O-trans-methoxy-mycolyl-trehalose 6-phosphate

trehalose-trans-methoxy-mono-mycolate

6-O-cis-methoxy-mycolyl-trehalose 6-phosphate

trehalose-cis-methoxy-mono-mycolate

6-O-trans-keto-mycolyl-trehalose 6-phosphate

trehalose-trans-keto-mono-mycolate

6-O-α-mycolyl-trehalose 6-phosphate

α, α'-trehalose 6-α-mycolate

6-O-cis-keto-mycolyl-trehalose 6-phosphate

trehalose-cis-keto-mono-mycolate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-oleoyl-sn-glycerol 3-phosphate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-myristoyl-sn-glycerol 3-phosphate

1-palmitoyl-sn-glycerol 3-phosphate

1-cis-vaccenoyl-sn-glycerol-3-phosphate

1-[18-hydroxyoeoyl]-2-[18-hydroxy-lioleoyl]-sn-glycerol 3-phosphate

1,2-dimyristoyl-sn-glycerol 3-phosphate

1-palmitoyl-2-myristoyl phosphatidate

dioleoyl phosphatidate

1,2-dicis-vaccenoyl-phosphatidate

1-cis-vaccenoyl-2-palmitoleoyl-sn-glycerol-3-phosphate

1-palmitoyl-2-cis-vaccenoyl phosphatidate

1-palmitoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

1-myristoyl-2-palmitoleoyl-sn-glycerol 3-phosphate

(-)-geosmin

(1E,4S,5E,7R)-germacra-1(10),5-dien-11-ol

(8S,9S,10S)-8,10-dimethyl-1-octalin

geranyl diphosphate

trans,octacis-decaprenyl phosphate

brassicasterol

sitosterol

stigmasterol

phytyl diphosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

phlorisovalerophenone

deoxyhumulone

deoxycohumulone

4-prenylphlorisovalerophenone

leucodopachrome

4-amino-2-(methanethioyl)-5-oxo-3-sulfanylpyrrolidine-2-carboxylate

(5E)-3-amino-4-sulfanyl-5-(sulfanylmethylidene)pyrrolidin-2-one

6-aminopenicillanate

isopenicillin N

penicillin G

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(cysteinyl)- 6-(hydroxymethyl)-diketopiperazine

allantoate

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

(2Z,4E,7E)-2-hydroxy-6-oxonona-2,4,7-triene-1,9-dioate

chorismate

L-aspartate

succinate

fumarate

(S)-malate

α,ω-9Z-octadecenedioate

3-carboxy-cis,cis-muconate

trans-aconitate

cis-aconitate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

acetate

formate

propanoate

(S)-lactate

(R)-lactate

7-hydroxylaurate

laurate

octanoate

decanoate

gentisate

(R)-3-hydroxybutanoate

(15Z)-tetracosenoate

leukotriene-E4

leukotriene-D4

linoleate

α-linolenate

stearate

palmitate

oleate

phytenate

5-deoxy-D-glucuronate

(R)-pantoate

L-α-amino-ε-keto-pimelate

L-2-aminoadipate

carbamate

L-serine

L-cysteine

L-tyrosine

L-glutamine

L-threonine

glycine

L-histidine

L-arginine

L-lysine

L-glutamate

L-methionine

L-phenylalanine

L-proline

L-tryptophan

L-alanine

L-valine

L-isoleucine

L-leucine

β-alanine

(S)-3-amino-2-methylpropanoate

D-glutamate

D-ornithine

D-proline

D-alanine

L-isoglutamine

L-aspartyl-4-phosphate

L-2,4-diaminobutanoate

L-cystathionine

L,L-diaminopimelate

L-ornithine

N-carbamoyl-L-aspartate

N⁶,N⁶-dimethyl-L-arginine

formyl-L-isoglutamine

N-formyl-L-glutamate

N-formimino-L-glutamate

N-acetyl-L-ornithine

seleno-L-homocysteine

L-saccharopine

L-2-amino-3-oxobutanoate

S-sulfanyl-L-cysteine

3-phospho-L-serine

S-methyl-L-cysteine

sarcosine

N-acetyl-L-glutamate

N-acetyl-L-methionine

N⁶-hydroxy-L-lysine

trans-4-hydroxy-L-proline

L-citrulline

1-aminocyclopropane-1-carboxylate

L-glutamate-5-semialdehyde

hypoglycin A

L-canaline

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

L-cystine

L-homoserine

O-phospho-L-homoserine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine