an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

mercuriphenyl acetate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

hydrogen selenide

glutathioselenol

selenodiglutathione

aminoacetone

1,2-dihydro-β-NADP

ammonia

bisorganyltrisulfane

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

H₂O

citrate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

3'-phosphoadenylyl-sulfate

oxaloacetate

urocanate

4-imidazolone-5-propanoate

CO₂

oxalosuccinate

acetyl phosphate

1,4-dihydroxy-2-naphthoyl-CoA

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

phosphoenolpyruvate

histidinol

histidinal

3-methyl-2-oxobutanoate

(S)-3-methyl-2-oxopentanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(2S)-2-isopropylmalate

S-ribosyl-L-homocysteine

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

ectoine

(2S)-4-acetamido-2-aminobutanoate

methylsalicylate

salicyl alcohol

porphobilinogen

5-aminolevulinate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

glycolate

1,4-dihydroxy-2-naphthoate

2,3-dihydroxy-p-cumate

(2R,3S)-2,3-dihydroxy-2,3-dihydro-p-cumate

O-ureido-L-homoserine

carbamoyl phosphate

DNA without lesion

carbon monoxide

2-protocatechuoylphloroglucinolcarboxylate

N-ethylammeline

deethylsimazine

2,5-didehydro-D-gluconate

2-keto-D-gluconate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

urea

hydrogen peroxide

(lipoyl)adenylate

5-carboxymethyl-2-hydroxymuconate

cyanamide

2-succinylbenzoate

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

2-dehydro-3-deoxy-D-gluconate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

isopentenyl diphosphate

prenyl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

N-succinyl-2-amino-6-ketopimelate

(S)-2,3,4,5-tetrahydrodipicolinate

thiamine diphosphate

2-(α-hydroxyethyl)thiamine diphosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(2R,3S)-3-methylmalate

citraconate

carboxyphosphate

propanoyl phosphate

4-aminobutanoate

4-guanidinobutanoate

L-arginino-succinate

N-succinyl-L,L-2,6-diaminopimelate

glutathione disulfide

2-dehydro-3-deoxy-D-gluconate 6-phosphate

L-α-amino-ε-keto-pimelate

carbamate

L-citrulline

L-cysteine

L-methionine

L-aspartate

L-glutamate

L-lysine

L-glutamine

L-tyrosine

glycine

L-histidine

L-asparagine

L-valine

L-proline

L-threonine

L-alanine

L-leucine

L-arginine

L-homoserine

L-aspartate 4-semialdehyde

L-homocysteine

O-succinyl-L-homoserine

L-glutamate-5-semialdehyde

L-ornithine

S-adenosyl-L-homocysteine

O-phospho-L-homoserine

L-canaline

meso-diaminopimelate

L-selenomethionine

seleno-L-homocysteine

L-2-amino-3-oxobutanoate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

L-2,4-diaminobutanoate

L-cystathionine

L,L-diaminopimelate

salicylate

2,3-dihydroxybenzoate

acetate

D-gluconate

D-mannonate

5-chloro-5-deoxy-D-ribonate

(S)-1-pyrroline-5-carboxylate

pristanate

palmitate

stearate

octanoate

laurate

7-hydroxylaurate

decanoate

18-hydroxyoleate

16-hydroxypalmitate

18-hydroxystearate

(15Z)-tetracosenoate

oleate

phytenate

linoleate

α-linolenate

(R)-lactate

pyruvate

formate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

2-oxoglutarate

5-chloro-4-hydroxy-2-oxopentanoate

cis-aconitate

D-threo-isocitrate

chorismate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

all-trans-retinyl palmitate

all-trans-retinol

(2E,6E)-farnesyl diphosphate

trans,octacis-decaprenyl phosphate

geranyl diphosphate

iron(III) dicitrate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

UDP-N-acetyl-α-D-mannosamine

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-mannosaminuronate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-ribose-1-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

β-D-fructofuranose

β-D-galactopyranose

α-D-galactopyranose

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

keto-D-fructose

D-xylulose

glycerol

1-octanol

ethanol

methanol

methylglyoxal

1-octanal

acetaldehyde

formaldehyde

caldariellaquinone

diacetyl

benzene

6-hydroxy-2-cyclohexen-one-carboxylate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

quercetin

caldariellaquinol

demethylmenaquinol-8

guanine

adenine

AMP

GMP

IMP

XMP

ATP

GTP

ADP

GDP

dGDP

dADP

dGTP

dATP

hypoxanthine

guanosine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

uracil

preQ₁

isoguanine

CDP

dCDP

UDP

dUDP

CTP

UTP

dUMP

dTMP

dTTP

dTDP

dUTP

dCTP

UMP

2'-deoxyuridine

thymidine

2'-deoxycytidine

coenzyme A

(R)-lipoate

8-oxo-GTP

8-oxo-dGTP

adenylo-succinate

5-hydroxy-CTP

2-hydroxy-dATP

NADP⁺

NAD⁺

NADPH

NADH

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

glycine betaine

(S)-NADHX

(R)-NADHX

thiamine

(indol-3-yl)acetate

methyl (indol-3-yl)acetate

acetyl-CoA

2-methylacetoacetyl-CoA

succinyl-CoA

(E)-glutaconyl-CoA

α-linolenoyl-CoA

linoleoyl-CoA

3'-dephospho-CoA

malonyl-CoA

isobutanoyl-CoA

oleoyl-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

16-hydroxypalmitoyl-CoA

palmitoyl-CoA

stearoyl-CoA

18-hydroxyoleoyl-CoA

18-hydroxystearoyl-CoA

pristanoyl-CoA

octanoyl-CoA

lauroyl-CoA

7-hydroxylauroyl-CoA

decanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(S)-malyl-CoA

phytenoyl-CoA

crotonyl-CoA

D-glucono-1,5-lactone

S-(hydroxymethyl)glutathione

glutathione

methanethiol

S-sulfanylglutathione

choline

betaine aldehyde

betaine aldehyde hydrate

agmatine

cadaverine

putrescine

2-iminopropanoate

2-aminoprop-2-enoate

superoxide

hydroxyl radical

selenite

hydrogensulfite

sulfate

selenate

sulfite

hydrogencarbonate

OH^-

chloride

phosphonate

phosphate

diphosphate

Fe³⁺

Mo²⁺

Zn²⁺

Hg²⁺

Fe²⁺

ammonium

H⁺

2-chloroacetate

preQ₀

(R)-citramalate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

oxygen

Hg⁰

hydrogen sulfide

DNA with lesion