an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1-piperideine 6-carboxylate

1,2-dihydro-β-NADP

enol-phenylpyruvate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

aminoacetone

ammonia

shikimate

shikimate 3-phosphate

(4S,5S)-4,5-dihydroxy-2,6-dioxohexanoate

2-dehydro-3-deoxy-D-gluconate

S-ribosyl-L-homocysteine

autoinducer 2

N-succinyl-L,L-2,6-diaminopimelate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

2-C-methyl-D-erythritol 4-phosphate

(R)-4'-phosphopantothenate

selenodiglutathione

glutathioselenol

hydrogen selenide

glutathione disulfide

acetoacetate

(2-hydroxyphenyl)acetate

homogentisate

4-maleyl-acetoacetate

S-formylglutathione

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

2-dehydropantoate

β-D-ribosylnicotinate

CDP-glycerol

(R)-10-Hydroxystearate

N¹-(5-phospho-β-D-ribosyl)glycinamide

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

2-iminoacetate

5-phospho-β-D-ribosylamine

(S)-2-amino-6-oxohexanoate

4-imidazolone-5-propanoate

urocanate

1,6-anhydro-N-acetyl-β-muramate

5-amino-6-(D-ribitylamino)uracil

2-(α-hydroxyethyl)thiamine diphosphate

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

(2S)-2-isopropylmalate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(R)-pantothenate

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

carbon monoxide

L-gulono-1,4-lactone

orotidine 5'-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

α-D-glucosamine 1-phosphate

lipid X

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

carbamoyl phosphate

carboxyphosphate

muconolactone

(+)-muconolactone

cis,cis-muconate

3-dehydroquinate

3-dehydroshikimate

L-selenocystathionine

(S)-dihydroorotate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

glutathionylspermidine

7-carboxy-7-deazaguanine

prephenate

5-enolpyruvoyl-shikimate 3-phosphate

lipid A disaccharide (E. coli)

lipid IV_A

thiamine phosphate

thiamine diphosphate

glycerone phosphate

quinolinate

γ-L-glutamyl 5-phosphate

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

N-acetyl-D-muramate 6-phosphate

xanthine

glycolate

4-amino-4-deoxychorismate

β-nicotinate D-ribonucleotide

3-phosphooxypyruvate

4-phosphooxy-L-threonine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

4-methyl-2-oxopentanoate

(S)-mandelate

(R)-mandelate

N-(5-phosphoribosyl)-anthranilate

anthranilate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

propanoyl phosphate

porphobilinogen

preuroporphyrinogen

coproporphyrinogen III

1-deoxy-L-glycero-tetrulose 4-phosphate

quercitrin

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

carbonic acid

isochorismate

L-canavanine

hydrogen peroxide

DNA without lesion

histidinal

histidinol

urea

isopentenyl diphosphate

prenyl diphosphate

D-gluconate 6-phosphate

phosphoenolpyruvate

citrate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

oxalosuccinate

CO₂

oxaloacetate

H₂O

DNA with lesion

4-methylphenol

L-homocysteine

ethylphosphate

Mg-protoporphyrin

protoheme

protoporphyrinogen IX

uroporphyrinogen-I

coproporphyrinogen I

uroporphyrinogen-III

protoporphyrin IX

hydrogen sulfide

oxygen

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

2-chloroacetate

β-D-mannosyl-(C55 ω-saturated dolichyl phosphate)

sn-glycerol 3-phosphate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ω-saturated C55 dolichol phosphate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

2-octaprenylphenol

(S)-2-hydroxyglutarate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

4-nitrophenol

p-nitrophenyl-α-L-rhamnopyranoside

(S)-NADHX

(R)-NADHX

caldariellaquinol

caldariellaquinone

NADH

NADPH

NAD⁺

NADP⁺

hydroxyl radical

superoxide

Fe³⁺

H⁺

ammonium

Fe²⁺

Mg²⁺

OH^-

selenite

selenate

hydrogencarbonate

sulfate

phosphate

triphosphate

diphosphate

chloride

S-(hydroxymethyl)glutathione

methanethiol

glutathione

S-sulfanylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

L-cysteate

3-sulfopyruvate

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

dehydrospermidine

spermidine

putrescine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

urate

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

kaempferol

quercetin

myricetin

quercetin-3-glucoside

rutin

(+)-taxifolin

(+)-dihydrokaempferol

(+)-dihydromyricetin

hesperidin

naringin

hesperitin-7-O-β-D-glucoside

prunin

salicylate

4-aminobenzoate

preQ₀

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

5,10-methylene-tetrahydromethanopterin

tetrahydromethanopterin

thiamine

nicotinate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

glycocholate

cholate

D-glucono-1,5-lactone

isovaleryl-CoA

(S)-3-hydroxy-3-methylglutaryl-CoA

3'-dephospho-CoA

succinyl-CoA

3-methylcrotonyl-CoA

3-methylglutaconyl-CoA

2-methylacetoacetyl-CoA

malonyl-CoA

acetyl-CoA

(S)-malyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

propanoyl-CoA

lauroyl-CoA

palmitoyl-CoA

stearoyl-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

chorismate

L-aspartate

succinate

fumarate

(S)-malate

cis-aconitate

(2S,3S)-2-methylcitrate

(2R,3S)-2-methylisocitrate

D-threo-isocitrate

pyruvate

acetate

formate

(R)-lactate

laurate

palmitate

stearate

oleate

(R)-pantoate

D-gluconate

orotate

(S)-1-pyrroline-5-carboxylate

4-deoxy-L-erythro-hex-4-enopyranuronate

L-α-amino-ε-keto-pimelate

carbamate

L-serine

β-alanine

L-alanine

L-leucine

L-glutamine

L-proline

glycine

D-glutamate

L-glutamate

L-lysine

L-arginine

L-histidine

L-phenylalanine

L-tryptophan

L-tyrosine

D-alanine

seleno-L-homocysteine

L-aspartyl-4-phosphate

L-2-amino-3-oxobutanoate

3-phospho-L-serine

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L,L-diaminopimelate

L-cystathionine

L-valine

L-isoleucine

L-threonine

L-ornithine

L-methionine

L-cysteine

L-citrulline

L-homoserine

L-aspartate 4-semialdehyde

1-aminocyclopropane-1-carboxylate

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

O-succinyl-L-homoserine

S-adenosyl-L-homocysteine

L-canaline

S-adenosyl-L-methionine

meso-diaminopimelate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

glyoxylate

2-oxobutanoate

2-oxoglutarate

glycerol

ethanol

methanol

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-nonaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

1-(β-D ribofuranosyl)nicotinamide

β-D-fructofuranose

β-L-rhamnopyranose

keto-D-fructose

D-xylulose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

D-glyceraldehyde

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

GDP-α-D-mannose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

D-glyceraldehyde 3-phosphate

α-D-glucopyranose 1-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-fructofuranose 1-phosphate

L-gulonate

diacetyl

methylglyoxal

acetaldehyde

formaldehyde

precorrin-3B

precorrin-4

precorrin-2

precorrin-1

dTDP

dTTP

dCDP

CDP

dUDP

dCMP

uracil

UDP

dUMP

dTMP

dCTP

dUTP

CTP

UTP

CMP

UMP

uridine

cytidine

2'-deoxycytidine

2'-deoxyuridine

thymidine

hypoxanthine

adenine

guanine

isoguanine

preQ₁

xanthosine

guanosine

inosine

adenosine

2'-deoxyinosine

2'-deoxyadenosine

2'-deoxyguanosine

ITP

GTP

ATP

IDP

GDP

ADP

IMP

XMP

GMP

AMP

dITP

dATP

dGTP

dIDP

dGDP

dADP

dAMP

dGMP

6,7-dimethyl-8-(1-D-ribityl)lumazine

7,8-dihydroneopterin 3'-triphosphate

(6R)-6-pyruvoyl-5,6,7,8-tetrahydropterin

6-carboxy-5,6,7,8-tetrahydropterin

8-oxo-GTP

8-oxo-dGTP

1-(5-phospho-β-D-ribosyl)-AMP

adenylo-succinate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

5-hydroxy-CTP

2-hydroxy-dATP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA