an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

selenodiglutathione

N-carbamoyl-2-oxoglycine

(2Z)-2-(acetamidomethylene)succinate

3-hydroxy-2-methylpyridine-5-carboxylate

5-formyl-3-hydroxy-2-methylpyridine-4-carboxylate

3-hydroxy-2-methylpyridine-4,5-dicarboxylate

5-carboxymethyl-2-hydroxymuconate

homogentisate

4-aminobutanoate

7-epicholate

oxamate

(S)-ureidoglycolate

hydrogen selenide

4-maleyl-acetoacetate

2,5-dioxopentanoate

N²-succinyl-L-glutamate 5-semialdehyde

N²-succinyl-L-ornithine

2-hydroxy-5-carboxymethylmuconate semialdehyde

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

N²-succinyl-L-arginine

quinolinate

pyruvic oxime

enol-phenylpyruvate

glutathioselenol

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

2-keto-L-gulonate

mercuriphenyl acetate

S-ribosyl-L-homocysteine

autoinducer 2

glutathione disulfide

2-keto-D-gluconate

2,5-didehydro-D-gluconate

(lipoyl)adenylate

preuroporphyrinogen

N,N-Dimethylformamide

dimethylamine

chloramphenicol

N²-succinylglutamate

citraconate

(2R,3S)-3-methylmalate

hydrogenobyrinate

hydrogenobyrinate a,c-diamide

(S)-2,3,4,5-tetrahydrodipicolinate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

3-deoxy-α-D-manno-2-octulosonate

(R)-pantothenate

D-erythro-imidazole-glycerol-phosphate

(S)-4-amino-5-oxopentanoate

ammonia

hydroxylamine

histidinal

histidinol

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

5-(methylsulfanyl)-ribulose 1-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

5-(methylsulfanyl)-α-D-ribose

5-dehydro-4-deoxy-D-glucarate

6-oxo-1,4,5,6-tetrahydronicotinate

(S)-2-formylglutarate

(2R)-2-amino-4-oxopentanoate

O-acetyl-L-serine

lipid X

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

L-β-lysine

(S)-5-hydroxyisourate

(S)-2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline

(2Z,4E)-2-hydroxyhexa-2,4-dienedioate

ADP-D-glycero-β-D-manno-heptose

ADP-L-glycero-β-D-manno-heptose

D-glycero-β-D-manno-heptose 1,7-bisphosphate

D-glycero-β-D-manno-heptose 1-phosphate

propanoyl phosphate

1-deoxy-L-glycero-tetrulose 4-phosphate

3-hydroxypropanoate

porphobilinogen

2-maleylacetate

5,6-dimethylbenzimidazole

α-ribazole 5'-phosphate

3-deoxy-D-manno-octulosonate 8-phosphate

N-(5-phosphoribosyl)-anthranilate

(2S)-2-isopropyl-3-oxosuccinate

3-ethylmalate

2-oxovalerate

orotidine 5'-phosphate

(S)-mandelate

(R)-mandelate

(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate

(4Z)-2-oxohept-4-enedioate

4-amino-2-methyl-5-pyrimidinemethanol

1,6-anhydro-N-acetyl-β-muramate

N-acetyl-D-muramate 6-phosphate

3-deoxy-D-arabino-heptulosonate 7-phosphate

4-methyl-3-oxoadipate

5-amino-6-(D-ribitylamino)uracil

oxalate

7,8-didemethyl-8-hydroxy-5-deazariboflavin

(2S)-lactyl-2-diphospho-5'-guanosine

3-amino-1-hydroxyacetone 1-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-amino-4-deoxychorismate

2-dehydropantoate

5-enolpyruvoyl-shikimate 3-phosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

lipid A disaccharide (E. coli)

lipid IV_A

thiamine phosphate

coproporphyrinogen III

hydroxypyruvate

tartronate semialdehyde

carbonic acid

coenzyme F₃₉₀-A

4-fumaryl-acetoacetate

acetoacetate

(4-hydroxyphenyl)acetate

(4S)-4-hydroxy-2-oxoheptanedioate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

5-oxo-L-proline

hydrogen peroxide

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

5-dehydro-2-deoxy-D-gluconate

carboxyphosphate

DNA without lesion

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

(S)-2-amino-6-oxohexanoate

2-phosphoglycolate

glycolate

4-pyridoxolactone

L-gulono-1,4-lactone

2-dehydro-3-deoxy-D-galactonate

2-dehydro-3-deoxy-D-gluconate

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

glycerone phosphate

2-methyl-1,4-benzoquinone

methyl-1,4-benzoquinol

4-hydroxy-2-nonenal

creatinine

β-nicotinate D-ribonucleotide

β-D-ribosylnicotinate

shikimate

shikimate 3-phosphate

nicotinate adenine dinucleotide

γ-L-glutamyl 5-phosphate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

imidazole acetol-phosphate

L-histidinol phosphate

L-canavanine

acetyl phosphate

prephenate

4-imidazolone-5-propanoate

urocanate

L-arginino-succinate

O-ureido-L-homoserine

canavaninosuccinate

D-gluconate 6-phosphate

2,3-didehydroadipyl-CoA

3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA

(E)-4-coumaroyl-CoA

4'-phosphopantetheine

(R)-4'-phosphopantothenate

(R)-4'-phosphopantothenoyl-L-cysteine

xanthine

3-oxopropanoate

3'-phosphoadenylyl-sulfate

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

5-aminolevulinate

2-dehydro-3-deoxy-D-galactonate 6-phosphate

6-phospho D-glucono-1,5-lactone

citrate

N-acetyl-L-glutamate 5-semialdehyde

N-acetylglutamyl-phosphate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

2-(α-hydroxyethyl)thiamine diphosphate

thiamine diphosphate

3-mercaptopyruvate

L-selenocystathionine

succinate semialdehyde

N-carbamoylputrescine

anthranilate

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

3-dehydroquinate

3-dehydroshikimate

3α,12α-dihydroxy-7-oxo-5β-cholan-24-oate

5-phospho-β-D-ribosylamine

phosphoenolpyruvate

isopentenyl diphosphate

prenyl diphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

oxalosuccinate

(2S)-2-isopropylmalate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

(E)-3-(methoxycarbonyl)pent-2-enedioate

5-methylcytosine

oxaloacetate

4-methyl-2-oxopentanoate

5-deoxy-α-ribose 1-phosphate

S-methyl-5'-thioadenosine

S-methyl-5-thio-α-D-ribose 1-phosphate

5-dehydro-D-gluconate

(S)-dihydroorotate

carbamoyl phosphate

3-ureidopropanoate

3-phosphooxypyruvate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

4-phosphooxy-L-threonine

α-D-glucosamine 1-phosphate

urea

propionamide

(indol-3-yl)acetamide

acrylamide

acrylate

4-guanidinobutyramide

4-guanidinobutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

H₂O

2-dehydro-3-deoxy-D-gluconate 6-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

CO₂

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

1,2-dihydro-β-NADP

1-piperideine 6-carboxylate

4-oxoglutaramate

(glutathion-S-yl)-4-hydroxy-2-nonenal

DNA with lesion

L-homocysteine

ethylphosphate

hydrogen cyanide

adenosylcobalamin

cob(I)alamin

adenosylcobalamin 5'-phosphate

adenosylcobinamide-GDP

cob(I)yrinate a,c-diamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)inamide

cob(II)yrinate c-monoamide

cob(II)yrinate a,c-diamide

cobyrinate

adenosylcobinamide

adenosyl-cobinamide phosphate

hemin

protoheme

protoporphyrinogen IX

uroporphyrinogen-III

uroporphyrinogen-I

coproporphyrinogen I

protoporphyrin IX

siroheme

oxygen

Hg⁰

hydrogen sulfide

2-iminobutanoate

2-iminosuccinate

2-iminopropanoate

2-chloroacetate

sn-glycerol 1-phosphate

sn-glycerol 3-phosphate

(R)-glycerate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

(2S)-2-phospholactate

(2R)-2,3-dihydroxy-3-methylbutanoate

α-D-glucosamine 6-phosphate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(S)-ureidoglycine

(R)-citramalate

(R)-methylmalonate-semialdehyde

(S)-methylmalonate-semialdehyde

(S)-4-hydroxymandelate

(R)-4-hydroxymandelate

3-(all-trans-octaprenyl)benzene-1,2-diol

(S)-3-hydroxy-isobutanoate

2-octaprenylphenol

2-methoxy-6-(all-trans-octaprenyl)phenol

acrylonitrile

(indole-3-yl)acetonitrile

preQ₀

chloramphenicol 3-acetate

1-chloro-2,4-dinitrobenzene

2,4-dinitrophenyl-S-glutathione

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

K⁺

H⁺

ammonium

Co²⁺

Hg²⁺

Fe²⁺

Zn²⁺

Mn²⁺

Ni²⁺

Mo²⁺

selenite

OH^-

molybdate

sulfite

nitrite

superoxide

selenate

hydrogencarbonate

nitrate

sulfate

hydrogensulfite

phosphonate

phosphate

triphosphate

diphosphate

chloride

hydroxyl radical

(2E,6E)-farnesyl diphosphate

sn-glycero-3-phosphoethanolamine

glycine betaine

betaine aldehyde

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

agmatine

putrescine

spermidine

γ-L-glutamyl-[(S)-allyl]-L-cysteine

S-allyl-L-cysteine

γ-L-glutamyl-(S)-methyl-L-cysteine

γ-L-glutamyl-(S)-trans-1-propenyl-L-cysteine

S-trans-1-propenyl-L-cysteine

S-(hydroxymethyl)glutathione

glutathione

methanethiol

thiocyanate

S-sulfanylglutathione

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

L-cysteate

3-sulfopyruvate

taurine

(R)-S-lactoylglutathione

D-galactono-1,4-lactone

cis-dienelactone

trans-dienelactone

D-glucono-1,5-lactone

2-methylbutanoyl-CoA

acryloyl-CoA

(2S)-ethylmalonyl-CoA

(2R)-ethylmalonyl-CoA

isobutanoyl-CoA

3-hydroxypropanoyl-CoA

3'-dephospho-CoA

4-hydroxybenzoyl-CoA

2-methylacetoacetyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxybutanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-buta-2-enoyl)-CoA

(3S)-hydroxyadipyl-CoA

(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyoctanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-octa-2-enoyl)-CoA

3-hydroxyisovaleryl-CoA

(E)-2-methylcrotonoyl-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(3R-hydroxyhexanoyl)-CoA

3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-(E-hexa-2-enoyl)-CoA

methylacrylyl-CoA

succinyl-CoA

malonyl-CoA

acetyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

crotonyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA

(2E,6Z,9Z,12Z,15Z,18Z)-tetracosahexaenoyl-CoA

(2E)-dec-2-enoyl-CoA

(2E)-oct-2-enoyl-CoA

phytanoyl-CoA

oleoyl-CoA

18-hydroxyoleoyl-CoA

(3R,7Z,10Z,13Z,16Z)-3-hydroxydocosatetraenoyl-CoA

(3R,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosapentaenoyl-CoA

(3R)-3-hydroxypentanoyl-CoA

(3R)-3-hydroxybutanoyl-CoA

(3R,9Z,12Z,15Z,18Z)-3-hydroxytetracosatetraenoyl-CoA

(S)-3-hydroxybutanoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z,21Z)-3-hydroxytetracosahexaenoyl-CoA

(3S,6Z,9Z,12Z,15Z,18Z)-3-hydroxytetracosapentaenoyl-CoA

(S)-3-hydroxydecanoyl-CoA

(S)-3-hydroxyoctanoyl-CoA

(9Z,12Z,15Z,18Z)-3-oxotetracosatetraenoyl-CoA

(9Z,12Z,15Z,18Z,21Z)-3-oxotetracosapentaenoyl-CoA

propanoyl-CoA

lauroyl-CoA

octanoyl-CoA

stearoyl-CoA

palmitoyl-CoA

2-hydroxyphytanoyl-CoA

(7Z,10Z,13Z,16Z)-3-oxodocosatetraenoyl-CoA

hexadecanedioyl-CoA

3-oxoadipyl-CoA

4-methyl-3-oxoadipyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

(S)-3-hydroxy-isobutanoyl-CoA

methane

3α,7α,12β-trihydroxy-5β-cholan-24-oate

3α,7α-dihydroxy-12-oxo-5β-cholan-24-oate

3-dehydrocholate

isocholate

glycocholate

chenodeoxycholate

cholate

7-oxolithocholate

(indol-3-yl)acetate

nicotinamide

nicotinate

riboflavin

thiamine

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

7,8-dihydrofolate monoglutamate

tetrahydromethanopterin

5,10-methylene-tetrahydromethanopterin

4-pyridoxate

pyridoxine

pyridoxamine

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxal

menadione

FADH₂

FAD

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

caldariellaquinone

caldariellaquinol

ubiquinol-8

menaquinol-8

demethylmenaquinol-8

3-demethylubiquinol-8

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-AMP

pppGpp

ppGpp

1-(5-phospho-β-D-ribosyl)-ATP

XMP

GMP

2'-deoxyinosine

2'-deoxyguanosine

hypoxanthine

2'-deoxyadenosine

dADP

dATP

IDP

ITP

dIDP

dITP

dGDP

dGTP

5'-deoxyadenosine

GTP

IMP

adenylo-succinate

GDP

ADP

ATP

AMP

isoguanine

8-oxo-dGTP

8-oxo-GTP

5-fluorocytosine

5-fluorouracil

guanosine

inosine

xanthosine

adenosine

uridine

cytidine

thymidine

2'-deoxycytidine

2'-deoxyuridine

cyclic di-3',5'-guanylate

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dCMP

dUMP

dTMP

CMP

UMP

dTDP

dCDP

dUDP

UDP

CDP

β-nicotinamide D-ribonucleotide

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

GDP-4-dehydro-α-D-rhamnose

GDP-α-D-mannose

GDP-β-L-fucose

ADP-α-D-glucose

preQ₁

thymine

cytosine

uracil

guanine

adenine

5,6-dihydrothymine

5,6-dihydrouracil

CMP-3-deoxy-β-D-manno-octulosonate

UDP-α-D-glucose

CDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-galactofuranose

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-glucuronate

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-α-D-galactose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

(R)-lipoate

molybdopterin

coenzyme A

oxidized coenzyme F₄₂₀-0

oxidized coenzyme F₄₂₀-2

MoO₂-molybdopterin cofactor

thio-molybdenum cofactor

(S)-1-pyrroline-5-carboxylate

precorrin-7

precorrin-8x

precorrin-6B

precorrin-6A

precorrin-5

precorrin-4

precorrin-3B

precorrin-3A

precorrin-2

precorrin-1

sirohydrochlorin

hydantoin

7,8-dihydrolumazine

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

molybdopterin adenine dinucleotide

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

cyclic pyranopterin phosphate

7,8-dihydropterin

7,8-dihydropteroate

orotate

benzene

3-hexaprenyl-4-hydroxybenzoate

4-hydroxybenzoate

7,8-dihydro-8-oxoguanine

urate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxybenzoate

3,4-dihydroxyphenylacetate

menadiol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

4-aminobenzoate

diacetyl

acetone

methylglyoxal

1-octanal

formaldehyde

acetaldehyde

D-glyceraldehyde

α-D-ribofuranose

β-D-ribopyranose

α-L-rhamnopyranose

β-L-rhamnopyranose

α-D-galactopyranose

β-D-galactopyranose

methanol

ethanol

1-octanol

glycerol

D-ribitol

1D-chiro-inositol

scyllo-inositol

myo-inositol

1-keto-D-chiro-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1D-myo-inositol 1-monophosphate

1D-myo-inositol 3-monophosphate

1-(β-D ribofuranosyl)nicotinamide

5-dehydro-4-deoxy-D-glucuronate

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

maltotriose

raffinose

stachyose

maltotetraose

maltopentaose

maltoheptaose

maltohexaose

4-deoxy-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

4-deoxy-2-O-sulfo-β-L-erythro-hex-4-enopyranuronosyl-(1,4)-D-N-sulfoglucosamine 6-O-sulfate

sucrose

keto-D-fructose

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetylmuramate

N-acetyl-α-D-glucosamine 1-phosphate

N-acetyl-β-D-glucosamine

D-xylulose

D-ribulose

L-ribulose

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

a peptidoglycan dimer (E. faeciums)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faecium, tetrapeptide)

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

4-phospho-D-erythronate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

D-tagatofuranose 1,6-bisphosphate

β-D-fructose 1,6-bisphosphate

D-allulose 6-phosphate

aldehydo-D-allose 6-phosphate

D-tagatofuranose 6-phosphate

keto-L-tagatose 6-phosphate

β-D-fructofuranose 6-phosphate

D-fructose 6-phosphate

1-deoxy-D-xylulose 5-phosphate

D-xylulose 5-phosphate

D-arabinofuranose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

aldehydo-D-ribose 5-phosphate

α-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-idonate

L-gulonate

D-galactonate

D-mannonate

D-gluconate

1-(oleoyl)-sn-glycero-3-phosphoethanolamine

1-C16:0-α,ω-dicarboxyl-2-lysophosphatidate

1-(18-hydroxyoleoyl)-sn-glycrol 3-phosphate

1-oleoyl-sn-glycerol 3-phosphate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-hexaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-heptaprenyl diphosphate

di-trans,octa-cis-undecaprenyl diphosphate

3-decaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-heptaprenyl-4-hydroxybenzoate

3-benzyl-3,6 -bis(cysteinylglycine)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

allantoate

acetamide

(S)-(+)-allantoin

5-amino-4-imidazolecarboxyamide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

(3E)-2-oxohex-3-enedioate

chorismate

succinate

fumarate

L-aspartate

(S)-malate

D-galactarate

3-(carbamoylamino)-2-methylpropanoate

(3E,5R)-5-carboxy-2-oxohept-3-enedioate

(2R,3S)-2-methylisocitrate

cis-aconitate

trans-aconitate

D-threo-isocitrate

3-oxoadipate

3-(4-hydroxyphenyl)pyruvate

3-phenyl-2-oxopropanoate

pyruvate

2-oxobutanoate

2-oxoglutarate

glyoxylate

acetate

formate

propanoate

(R)-lactate

(S)-lactate

laurate

octanoate

4-hydroxybutanoate

(R)-3-hydroxybutanoate

stearate

oleate

palmitate

(R)-pantoate

5-deoxy-D-glucuronate

carbamate

L-α-amino-ε-keto-pimelate

L-serine

L-tyrosine

glycine

L-threonine

L-glutamine

L-cysteine

L-histidine

L-arginine

L-lysine

L-glutamate

L-tryptophan

L-proline

L-alanine

L-phenylalanine

L-valine

L-leucine

L-isoleucine

L-methionine

creatine

(R)-β-lysine

β-alanine

(R)-3-amino-2-methylpropanoate

(S)-3-amino-2-methylpropanoate

D-glutamate

cis-4-hydroxy-D-proline

D-aspartate

D-alanine

L-isoglutamine

L,L-diaminopimelate

L-aspartyl-4-phosphate

L-cystathionine

L-ornithine

N-carbamoyl-L-aspartate

N-formyl-L-glutamate

formyl-L-isoglutamine

N-formimino-L-glutamate

N-acetyl-L-citrulline

N-acetyl-L-ornithine

L-saccharopine

seleno-L-homocysteine

3-phospho-L-serine

S-methyl-L-cysteine

sarcosine

N-carbamoylglycine

N-acetyl-L-methionine

N-acetyl-L-glutamate

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

L-canaline

L-homoserine

1-aminocyclopropane-1-carboxylate

L-aspartate 4-semialdehyde

hypoglycin A

O-succinyl-L-homoserine

O-phospho-L-homoserine

L-glutamate-5-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

meso-diaminopimelate

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

hypoglycin B

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-cysteinylglycine

D-alanyl-D-alanine

γ-L-glutamyl-L-cysteine

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine