an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

β-D-fructose 2,6-bisphosphate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

porphobilinogen

preuroporphyrinogen

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

bisorganyltrisulfane

5-aminolevulinate

(S)-4-amino-5-oxopentanoate

2-succinyl-5-enolpyruvoyl-6-hydroxy-3-cyclohexene-1-carboxylate

4-fumaryl-acetoacetate

(2R,3S)-3-methylmalate

citraconate

2-hydroxy-5-(methylsulfanyl)-3-oxopent-1-enyl 1-phosphate

5-(methylsulfanyl)-2,3-dioxopentyl 1-phosphate

luteolin 7-O-[β-D-glucosyluronate-(1,2)-β-D-glucosiduronate]-4'-O-β-D-glucosiduronate

dimethylthiophosphate

3-keto-L-gulonate 6-phosphate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

4-(2'-carboxyphenyl)-4-oxobutyryl-CoA

3-phosphooxypyruvate

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

(R)-4'-phosphopantothenoyl-L-cysteine

propanoyl phosphate

D-gluconate 6-phosphate

(R)-1-amino-2-propanol O-2-phosphate

dialurate

glutathioselenol

(S)-dihydroorotate

3-methyl-2-oxobutanoate

diethylphosphate

(S)-3-methyl-2-oxopentanoate

1-deoxy-L-glycero-tetrulose 4-phosphate

H₂O

L-canavanine

luteolin 7-O-β-D-glucuronide

α-ribazole

2-dehydro-3-deoxy-D-gluconate 6-phosphate

3-dehydroshikimate

4'-phosphopantetheine

autoinducer 2

shikimate

γ-L-glutamyl 5-phosphate

(R)-3-(phenyl)lactoyl-CoA

1,4-dihydroxy-2-naphthoyl-CoA

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate

palmitaldehyde

urea

2-amino-3-carboxymuconate-6-semialdehyde

glutathione disulfide

hydrogen selenide

selenodiglutathione

2-keto-L-gulonate

prephenate

N⁵-carboxyaminoimidazole ribonucleotide

2-succinylbenzoate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

prenyl diphosphate

(S)-2-aceto-2-hydroxybutanoate

anthranilate

N-(5-phosphoribosyl)-anthranilate

carboxyphosphate

carbamoyl phosphate

thiamine diphosphate

CO₂

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

oxaloacetate

isopentenyl diphosphate

quinolinate

β-nicotinate D-ribonucleotide

5-dehydro-4-deoxy-D-glucarate

tartronate semialdehyde

5-phospho-β-D-ribosylamine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

citrate

(2-carboxy-2,5-dihydro-5-oxofuran-2-yl)-acetate

nicotinate adenine dinucleotide

oxalosuccinate

(2E)-hexadecenal

4-amino-4-deoxychorismate

2-oxovalerate

3-ethylmalate

4-methyl-2-oxopentanoate

(2S)-2-isopropyl-3-oxosuccinate

(2R,3S)-3-isopropylmalate

2,5-dioxopentanoate

2-isopropylmaleate

(2S)-2-isopropylmalate

1-piperideine 6-carboxylate

α-D-glucosamine 1-phosphate

hydrogenobyrinate

phosphoenolpyruvate

(S)-2-acetolactate

(R)-2,3-dihydroxy-3-methylpentanoate

luteolin 7-O-β-D-diglucuronide

L-tartrate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

5-dehydro-D-gluconate

glycerone phosphate

3-oxopropanoate

5-dehydro-2-deoxy-D-gluconate

5-dehydro-2-deoxy-D-gluconate 6-phosphate

histidinol

histidinal

1,2-dihydro-β-NADP

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

5-enolpyruvoyl-shikimate 3-phosphate

3-dehydroquinate

3-deoxy-D-arabino-heptulosonate 7-phosphate

orotidine 5'-phosphate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

3,4-dihydroxyphenylacetaldehyde

S-ribosyl-L-homocysteine

ethanolamine

diethylthiophosphate

3-methoxy-4-hydroxyphenylglycolaldehyde

shikimate 3-phosphate

3-hydroxypropanal

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

3-amino-1-hydroxyacetone 1-phosphate

2-dehydro-3-deoxy-D-gluconate

O-ureido-L-homoserine

DNA without lesion

O-acetyl-L-serine

(R)-4'-phosphopantothenate

(R)-pantothenate

thiamine phosphate

hydrogen peroxide

5-hydroxyindole acetate

5-hydroxyindole acetaldehyde

propynoate

prop-2-ynal

dimethylsulfoniopropanoate

4-imidazoleacetate

imidazole acetaldehyde

D-glucurono-6,3-lactone

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

4-acetamidobutanoate

4-acetamidobutanal

5-amino-6-(D-ribitylamino)uracil

(S)-mandelate

(R)-mandelate

N¹-(5-phospho-β-D-ribosyl)glycinamide

1,4-dihydroxy-2-naphthoate

coproporphyrinogen III

mycothione

4-amino-2-methyl-5-pyrimidinemethanol

4-phosphooxy-L-threonine

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

2-dehydro-3-deoxy-L-rhamnonate

glycolate

L-arginino-succinate

canavaninosuccinate

acetoacetate

acetyl phosphate

carbonic acid

(S)-2,3,4,5-tetrahydrodipicolinate

isochorismate

(S)-2-amino-6-oxohexanoate

2-C-methyl-D-erythritol 4-phosphate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

2,5-didehydro-D-gluconate

2-keto-D-gluconate

(4,5-dihydro-5-oxofuran-2-yl)-acetate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

5,6-dimethylbenzimidazole

adenosine 5'-phosphoselenate

adenosine 5'-phosphosulfate

hydrogenobyrinate a,c-diamide

hydroxypyruvate

1-phosphatidyl-myo-inositol 2-mannose

1-phosphatidyl-myo-inositol

α-ribazole 5'-phosphate

2-dehydropantoate

coenzyme A

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

isoguanine

XMP

hypoxanthine

8-oxo-GMP

8-oxo-GTP

ADP

ATP

dATP

GTP

dGTP

AMP

IMP

1-(5-phospho-β-D-ribosyl)-AMP

1-(5-phospho-β-D-ribosyl)-ATP

GDP

dGDP

dADP

ppGpp

pppGpp

GMP

5'-deoxyadenosine

8-oxo-dGMP

8-oxo-dGTP

2'-deoxyguanosine

2'-deoxyadenosine

adenylo-succinate

2'-deoxyinosine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

ADP-α-D-glucose

GDP-α-D-mannose

GDP-4-dehydro-6-deoxy-β-L-galactose

GDP-4-dehydro-α-D-rhamnose

GDP-β-L-fucose

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-α-D-galactose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-glucuronate

UDP-α-D-glucose

UDP-N-acetyl-α-D-muramate

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

guanosine

inosine

adenosine

NAD⁺

NADP⁺

NADH

NADPH

dUMP

dCMP

dTMP

dTTP

dUTP

dCTP

dTDP

dCDP

dUDP

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

UDP

CDP

CMP

UMP

UTP

CTP

2-hydroxy-dATP

5-hydroxy-CTP

guanine

adenine

uracil

glycine betaine

FMN

FMNH₂

caldariellaquinol

demethylmenaquinol-8

caldariellaquinone

(R)-NADHX

(S)-NADHX

riboflavin

nicotinate

menadione

pyridoxal 5'-phosphate

pyridoxine 5'-phosphate

pyridoxamine 5'-phosphate

(indol-3-yl)acetate

acetyl-CoA

2-methylacetoacetyl-CoA

(3E)-tetradec-3-enoyl-CoA

(2E,4E)-tetradeca-2,4-dienoyl-CoA

(3E)-undec-3-enoyl-CoA

2-trans, 4-trans-undecadienoyl-CoA

2-trans, 4-cis-undecadienoyl-CoA

(2R)-ethylmalonyl-CoA

(2S)-ethylmalonyl-CoA

succinyl-CoA

4-hydroxybutanoyl-CoA

3'-dephospho-CoA

acetoacetyl-CoA

3-oxopentanoyl-CoA

propanoyl-CoA

(E)-cinnamoyl-CoA

(2E)-dec-2-enoyl-CoA

trans-Δ², cis-Δ⁴-decadienoyl-CoA

(S)-methylmalonyl-CoA

(R)-methylmalonyl-CoA

3-dimethylsulfoniopropionaldehyde

glutathione

5-(2-hydroxyethyl)-4-methylthiazole

4-methyl-5-(2-phosphooxyethyl)thiazole

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

thiocyanate

mycothiol

S-sulfanylglutathione

choline

betaine aldehyde

betaine aldehyde hydrate

spermidine

putrescine

(2Z)-2-aminobut-2-enoate

ferrichrome

glycerophosphoglycerol

glycerophosphoserine

sn-glycero-3-phosphoethanolamine

(2E,6E)-farnesyl diphosphate

hydroxyl radical

superoxide

hydrogensulfite

sulfate

selenite

hydrogencarbonate

OH^-

sulfite

thiosulfate

molybdate

selenate

chloride

phosphate

triphosphate

diphosphate

Fe³⁺

Co²⁺

Fe²⁺

Mg²⁺

Ni²⁺

Mo²⁺

ammonium

H⁺

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

2-chloroacetate

paraoxon

4-nitrophenol

parathion

hydrogen cyanide

(R)-4-hydroxymandelate

(S)-4-hydroxymandelate

(S)-methylmalonate-semialdehyde

(R)-citramalate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(R)-3-(phenyl)lactate

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

(R)-glycerate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

hydrogen sulfide

oxygen

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

Mg-protoporphyrin

protoporphyrin IX

protoporphyrinogen IX

protoheme

cob(I)alamin

adenosylcobalamin

cobalt-precorrin-6B

adenosylcobyrate

cobalt-precorrin-6A

cobalt-precorrin-5B

adenosylcobinamide

cob(I)inamide

adenosyl-cob(III)yrinate a,c-diamide

cob(I)yrinate a,c-diamide

adenosylcobinamide-GDP

adenosylcobalamin 5'-phosphate

adenosyl-cobinamide phosphate

cobyrinate

cob(II)yrinate a,c-diamide

cob(II)yrinate c-monoamide

ethylphosphate

L-homocysteine

DNA with lesion

diacetyl

(R)-acetoin

methylglyoxal

salicylaldehyde

benzaldehyde

phytenal

dodecanal

decanal

(S)-lactaldehyde

1-propanal

1-octanal

acetaldehyde

α-D-galactopyranose

β-L-rhamnopyranose

α-L-rhamnopyranose

D-glyceraldehyde

aldehydo-D-ribose

β-D-ribofuranose

α-D-ribofuranose

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

2,3-dihydroxybenzoate

protocatechuate

3,4-dihydroxyphenylglycolaldehyde

3,4-dihydroxyphenylacetate

3,4-dihydroxymandelate

enterobactin

4-aminophenol

(indol-3-yl)acetaldehyde

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

methyl parathion

amino-parathion

vanillyl mandelate

salicylate

trans-cinnamate

4-aminobenzoate

benzoate

luteolin

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-octaprenyl diphosphate

geranylgeranyl diphosphate

iron(III) dicitrate

D-alanyl-D-alanine

L-α-amino-ε-keto-pimelate

carbamate

L-saccharopine

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

N-acetyl-L-ornithine

N-acetyl-L-methionine

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-cysteine

L-methionine

L-glutamate

L-glutamine

L-tryptophan

L-serine

L-ornithine

L-alanine

L-valine

L-threonine

L-leucine

L-isoleucine

L-aspartate

L-histidine

L-lysine

L-proline

L,L-diaminopimelate

L-arginine

L-tyrosine

D-alanine

D-glutamate

D-aspartate

glycine

β-alanine

L-citrulline

L-glutamate-5-semialdehyde

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

L-homoserine

S-adenosyl-L-homocysteine

L-canaline

O-phospho-L-homoserine

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

octanoate

laurate

palmitate

decanoate

phytenate

(2E)-hexadecenoate

4-hydroxybutanoate

(R)-lactate

(S)-lactate

acetate

pyruvate

formate

propanoate

glyoxylate

2-oxoglutarate

2-oxobutanoate

3-phenyl-2-oxopropanoate

3-oxoadipate

cis-aconitate

3-carboxy-cis,cis-muconate

D-threo-isocitrate

chorismate

D-glucarate

fumarate

succinate

(S)-malate

(R)-pantoate

orotate

5-deoxy-D-glucuronate

D-gluconate

D-mannonate

(S)-1-pyrroline-5-carboxylate

D-tagaturonate

aldehydo-D-galacturonate

β-D-glucuronate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

L-idonate

sucrose

α,α-trehalose

maltopentaose

maltohexaose

maltotriose

maltotetraose

maltoheptaose

stachyose

raffinose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

5-phospho-α-D-ribose 1-diphosphate

4-phospho-D-erythronate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

L-rhamnulose 1-phosphate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

D-tagatofuranose 6-phosphate

keto-L-tagatose 6-phosphate

β-D-fructose 1,6-bisphosphate

β-D-fructofuranose 6-phosphate

β-D-glucose 6-phosphate

α-D-ribose-1-phosphate

L-xylulose 5-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-ribose 5-phosphate

β-D-ribose 5-phosphate

α-D-ribose 5-phosphate

L-ribulose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

α,α-trehalose 6-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparatyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

a peptidoglycan tetramer with an L,D cross-link (Enterococcus faecium)

glycerol

galactitol 1-phosphate

β-D-fructofuranose

keto-D-fructose

keto-L-rhamnulose

D-xylulose

D-ribulose

L-ribulose

(S)-propane-1,2-diol

scyllo-inositol

1D-chiro-inositol

myo-inositol

scyllo-inosose

3D-(3,5/4)-trihydroxycyclohexane-1,2-dione

1-keto-D-chiro-inositol

1D-myo-inositol 3-monophosphate

propan-1-ol

ethanol

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

6-(hydroxymethyl)-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

reduced riboflavin

6,7-dimethyl-8-(1-D-ribityl)lumazine

precorrin-3A

precorrin-2

precorrin-5

precorrin-1

precorrin-8x

precorrin-4