an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

ammonia

enol-phenylpyruvate

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

1,2-dihydro-β-NADP

1-piperideine 6-carboxylate

selenodiglutathione

glutathioselenol

glutathione disulfide

2-keto-L-gulonate

hydrogen selenide

3-dehydroshikimate

L-histidinol phosphate

(S)-dihydroorotate

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

S-ribosyl-L-homocysteine

autoinducer 2

citraconate

(2R,3S)-3-methylmalate

L-β-lysine

orotidine 5'-phosphate

3-phosphooxypyruvate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

α-D-ribose-1-methylphosphonate 5-phosphate

5-phospho-α-D-ribose 1,2-cyclic phosphate

chloramphenicol

2-dehydro-3-deoxy-D-gluconate

2-dehydro-3-deoxy-D-gluconate 6-phosphate

coproporphyrinogen III

N-acetyl-D-galactosamine 6-phosphate

D-galactosamine-6-phosphate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

N⁵-carboxyaminoimidazole ribonucleotide

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

1-deoxy-L-glycero-tetrulose 4-phosphate

5-amino-6-(D-ribitylamino)uracil

5-enolpyruvoyl-shikimate 3-phosphate

isopentenyl diphosphate

γ-L-glutamyl 5-phosphate

(2S)-2-isopropyl-3-oxosuccinate

4-methyl-2-oxopentanoate

3-ethylmalate

2-oxovalerate

salicyl alcohol

methylsalicylate

L-canavanine

histidinal

histidinol

(S)-2-amino-6-oxohexanoate

carboxynorspermidine

norspermidine

2-deoxygluconate

3-dehydro-2-deoxy-D-gluconate

2-dehydropantoate

(S)-4-amino-5-oxopentanoate

5-aminolevulinate

O-acetyl-L-serine

S-adenosyl 3-(methylsulfanyl)propylamine

S-methyl-5'-thioadenosine

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

acetyl phosphate

imidazole acetol-phosphate

2-keto-D-gluconate

2,5-didehydro-D-gluconate

hydrogenobyrinate

hydrogen peroxide

shikimate

shikimate 3-phosphate

4'-phosphopantetheine

D-erythro-imidazole-glycerol-phosphate

3-dehydroquinate

N-acetyl-L-glutamate 5-semialdehyde

O-ureido-L-homoserine

canavaninosuccinate

L-arginino-succinate

adenosine 5'-phosphosulfate

adenosine 5'-phosphoselenate

DNA without lesion

isochorismate

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

urea

urea-1-carboxylate

xanthine

3-deoxy-D-arabino-heptulosonate 7-phosphate

(2S)-2-isopropylmalate

2-isopropylmaleate

(2R,3S)-3-isopropylmalate

phosphoenolpyruvate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

β-nicotinate D-ribonucleotide

quinolinate

oxalosuccinate

(R)-2,3-dihydroxy-3-methylpentanoate

glycerone phosphate

3-deoxy-D-glycero-2,5-hexodiulosonate

D-gluconate 6-phosphate

5-dehydro-D-gluconate

propanoyl phosphate

(S)-2-aceto-2-hydroxybutanoate

(S)-2-acetolactate

CO₂

carbamoyl phosphate

carboxyphosphate

oxaloacetate

citrate

H₂O

α-D-glucosamine 6-phosphate

hydrogen cyanide

2-iminosuccinate

2-iminopropanoate

2-iminobutanoate

L-homocysteine

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

sn-glycerol 3-phosphate

carboxyphosphinopyruvate

3-(hydroxyphosphinoyl)pyruvate

1-carboxyvinyl carboxyphosphonate

DNA with lesion

cobalt-precorrin-4

cobalt-precorrin-5A

protoheme

protoporphyrin IX

uroporphyrinogen-III

protoporphyrinogen IX

oxygen

hydrogen sulfide

2-O-(α-D-glucopyranosyl)-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-3-phospho-D-glycerate

2-[2-O-(α-D-mannopyranosyl)-(1→2)-α-D-glucopyranosyl]-D-glycerate

2-O-(α-D-glucopyranosyl)-3-phospho-D-glycerate

3-phospho-D-glyceroyl-phosphate

3-phospho-D-glycerate

2-phospho-D-glycerate

(2R)-2,3-dihydroxy-3-methylbutanoate

CMP-N-acetyl-β-neuraminate

(R)-citramalate

preQ₀

chloramphenicol 3-acetate

N-acetyl-β-neuraminate

5'-deoxy-5'-fluoroadenosine

5-fluoro-5-deoxy-D-ribose 1-phosphate

5-chloro-5-deoxy-D-ribonate

5-chloro-4-hydroxy-2-oxopentanoate

5'-chloro-5'-deoxyadenosine

5-chloro-5-deoxyribose 1-phosphate

Fe³⁺

H⁺

ammonium

Fe²⁺

Zn²⁺

Mn²⁺

Mo²⁺

hydrogensulfite

selenite

OH^-

superoxide

thiosulfate

sulfite

selenate

hydrogencarbonate

sulfate

phosphonate

phosphate

diphosphate

hydroxyl radical

(2E,6E)-farnesyl diphosphate

glycine betaine

2-aminoprop-2-enoate

(2Z)-2-aminobut-2-enoate

agmatine

putrescine

spermidine

glutathione

thiocyanate

methanethiol

L-cysteate

3-sulfopyruvate

all-trans-retinyl palmitate

(E)-glutaconyl-CoA

succinyl-CoA

CoA-disulfide

3'-dephospho-CoA

acetyl-CoA

crotonyl-CoA

propanoyl-CoA

palmitoyl-CoA

methane

methyl (indol-3-yl)acetate

(indol-3-yl)acetate

nicotinate

riboflavin

thiamine

all-trans-retinol

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

pyridoxamine 5'-phosphate

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

FMNH₂

FMN

(R)-NADHX

(S)-NADHX

NADH

NADPH

NAD⁺

NADP⁺

isoguanine

8-oxo-dGTP

8-oxo-GTP

dAMP

ppGpp

adenylo-succinate

1-(5-phospho-β-D-ribosyl)-AMP

cyclic-GMP

cyclic-AMP

pppGpp

1-(5-phospho-β-D-ribosyl)-ATP

5'-deoxyadenosine

dGMP

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

hypoxanthine

GMP

dATP

IDP

ITP

dIDP

dITP

dGTP

GTP

IMP

XMP

dADP

dGDP

GDP

AMP

ADP

ATP

xanthosine

guanosine

inosine

adenosine

uridine

cytidine

2'-deoxycytidine

thymidine

2'-deoxyuridine

2-hydroxy-dATP

5-hydroxy-CTP

dTTP

dCTP

dUTP

UTP

CTP

dTMP

dUMP

dCMP

CMP

UMP

dTDP

dUDP

dCDP

UDP

CDP

GDP-α-D-mannose

GDP-α-D-glucose

ADP-α-D-glucose

preQ₁

uracil

guanine

adenine

UDP-α-D-glucose

dTDP-α-D-glucose

UDP-α-D-glucuronate

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-α-D-galactose

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-glucosamine

dTDP-β-L-rhamnose

dTDP-4-dehydro-β-L-rhamnose

coenzyme A

(S)-1-pyrroline-5-carboxylate

precorrin-8x

6,7-dimethyl-8-(1-D-ribityl)lumazine

reduced riboflavin

7,8-dihydroneopterin 3'-triphosphate

orotate

salicyl-6-hydroxy-2-cyclohexene-on-oyl

6-hydroxy-2-cyclohexen-one-carboxylate

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

2,3-dihydroxybenzoate

salicylate

diacetyl

methylglyoxal

butan-1-al

acetaldehyde

D-glyceraldehyde

α-D-galactopyranose

methanol

butan-1-ol

glycerol

5-dehydro-4-deoxy-D-glucuronate

aldehydo-D-galacturonate

unsaturated gellan tetrasaccharide

maltotriose

raffinose

β-D-Glcp-(1→4)-α-L-Rhap-(1→3)-D-Glcp

stachyose

maltotetraose

maltoheptaose

maltohexaose

maltopentaose

sucrose

4-deoxy-β-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine

α,α-trehalose

keto-D-fructose

N-acetyl-α-D-mannosamine

D-xylulose

D-ribulose

L-ribulose

β-D-fructofuranose

4-deoxy-L-threo-hex-4-enopyranuronate

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

1-O-acetyl-α-maltose

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

α,α-trehalose 6-phosphate

α-D-glucopyranose 1-phosphate

D-glyceraldehyde 3-phosphate

D-sedoheptulose 7-phosphate

D-erythrose 4-phosphate

5-phospho-α-D-ribose 1-diphosphate

β-D-fructose 1,6-bisphosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

D-xylulose 5-phosphate

D-ribulose 5-phosphate

L-ribulose 5-phosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

β-D-glucopyranose 1-phosphate

β-D-fructofuranose 1-phosphate

α-D-mannose 1-phosphate

L-idonate

D-mannonate

D-gluconate

trans,octacis-decaprenyl phosphate

di-trans,octa-cis-undecaprenyl phosphate

geranylgeranyl diphosphate

all-trans-heptaprenyl diphosphate

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-amino-4-imidazolecarboxyamide

chorismate

succinate

L-aspartate

fumarate

cis-aconitate

D-threo-isocitrate

3-phenyl-2-oxopropanoate

pyruvate

2-oxoglutarate

2-oxobutanoate

acetate

formate

propanoate

(R)-lactate

(R)-2-hydroxybutanoate

(9Z,15Z)-12,13-epoxy-octadeca-9,15-dienoate

(12Z,15Z)-9,10-epoxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-epoxyoctadeca-9,12-dienoate

palmitate

(9Z,15Z)-12,13-dihydroxyoctadeca-9,15-dienoate

(12Z,15Z)-9,10-dihydroxyoctadeca-12,15-dienoate

(9Z,12Z)-15,16-dihydroxyoctadeca-9,12-dienoate

(R)-pantoate

D-tagaturonate

carbamate

L-serine

L-tyrosine

L-asparagine

glycine

L-glutamine

L-threonine

L-cysteine

L-arginine

L-histidine

L-lysine

L-glutamate

L-leucine

L-phenylalanine

L-isoleucine

L-valine

L-tryptophan

L-proline

L-alanine

L-methionine

(R)-β-lysine

D-alanine

D-aspartate

L-ornithine

L-aspartyl-4-phosphate

N-carbamoyl-L-aspartate

N-acetyl-L-ornithine

L-saccharopine

3-phospho-L-serine

N-acetyl-L-glutamate

N-acetyl-L-methionine

trans-4-hydroxy-L-proline

O-acetyl-L-homoserine

L-citrulline

O-succinyl-L-homoserine

L-canaline

L-glutamate-5-semialdehyde

O-phospho-L-homoserine

S-adenosyl-L-homocysteine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine